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Bug: Fixed R Dockerfiles (#357) 

* Fixed consistency in format

* Give user permissions to reinstall R packages
This commit is contained in:
Brian 2018-01-25 08:25:39 -08:00 коммит произвёл GitHub
Родитель a86dc7ee26
Коммит 5ceec67346
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Идентификатор ключа GPG: 4AEE18F83AFDEB23
6 изменённых файлов: 16 добавлений и 23 удалений
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4
docker-image/r/spark1.6.3/base/Dockerfile
Просмотреть файл

@ -96,8 +96,6 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
## Add a library directory (for user-installed packages)
&& mkdir -p /usr/local/lib/R/site-library \
&& chown root:staff /usr/local/lib/R/site-library \
&& chmod g+wx /usr/local/lib/R/site-library \
## Fix library path
&& echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
@ -109,6 +107,8 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl'); Sys.setenv(SPARK_HOME ='"$SPARK_HOME"')" >> /usr/local/lib/R/etc/Rprofile.site \
## Use littler installation scripts
&& Rscript -e "install.packages(c('littler', 'docopt', 'tidyverse', 'sparklyr'), repo = '$MRAN')" \
&& chown -R root:staff /usr/local/lib/R/site-library \
&& chmod -R g+wx /usr/local/lib/R/site-library \
&& ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
&& ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
&& ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \

4
docker-image/r/spark1.6.3/gpu/Dockerfile
Просмотреть файл

@ -113,8 +113,6 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
## Add a library directory (for user-installed packages)
&& mkdir -p /usr/local/lib/R/site-library \
&& chown root:staff /usr/local/lib/R/site-library \
&& chmod g+wx /usr/local/lib/R/site-library \
## Fix library path
&& echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
@ -126,6 +124,8 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl');" >> /usr/local/lib/R/etc/Rprofile.site \
&& echo "Sys.setenv(SPARK_HOME ='"$SPARK_HOME"');" >> /usr/local/lib/R/etc/Rprofile.site \
&& Rscript -e "install.packages(c('littler', 'docopt', 'tidyverse', 'sparklyr', 'keras', 'tensorflow'), repo = '$MRAN')" \
&& chown -R root:staff /usr/local/lib/R/site-library \
&& chmod -R g+wx /usr/local/lib/R/site-library \
&& ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
&& ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
&& ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \

4
docker-image/r/spark2.1.0/base/Dockerfile
Просмотреть файл

@ -96,8 +96,6 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
## Add a library directory (for user-installed packages)
&& mkdir -p /usr/local/lib/R/site-library \
&& chown root:staff /usr/local/lib/R/site-library \
&& chmod g+wx /usr/local/lib/R/site-library \
## Fix library path
&& echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
@ -109,6 +107,8 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl'); Sys.setenv(SPARK_HOME ='"$SPARK_HOME"')" >> /usr/local/lib/R/etc/Rprofile.site \
## Use littler installation scripts
&& Rscript -e "install.packages(c('littler', 'docopt', 'tidyverse', 'sparklyr'), repo = '$MRAN')" \
&& chown -R root:staff /usr/local/lib/R/site-library \
&& chmod -R g+wx /usr/local/lib/R/site-library \
&& ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
&& ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
&& ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \

13
docker-image/r/spark2.1.0/gpu/Dockerfile
Просмотреть файл

@ -110,19 +110,12 @@ RUN apt-get update \
&& make \
&& make install \
## Add a default CRAN mirror
&& echo "\n\
\noptions(repos = c(CRAN = 'https://cran.rstudio.com/'), \
\n download.file.method = 'libcurl') \
\n" >> /usr/local/lib/R/etc/Rprofile.site \
## && echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
&& echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
## Add a library directory (for user-installed packages)
&& mkdir -p /usr/local/lib/R/site-library \
&& chown root:staff /usr/local/lib/R/site-library \
&& chmod g+wx /usr/local/lib/R/site-library \
## Fix library path
&& echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}"
>> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
## install packages from date-locked MRAN snapshot of CRAN
&& [ -z "$BUILD_DATE" ] && BUILD_DATE=$(TZ="America/Los_Angeles" date -I) || true \
&& MRAN=https://mran.microsoft.com/snapshot/${BUILD_DATE} \
@ -131,6 +124,8 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl');" >> /usr/local/lib/R/etc/Rprofile.site \
&& echo "Sys.setenv(SPARK_HOME ='"$SPARK_HOME"');" >> /usr/local/lib/R/etc/Rprofile.site \
&& Rscript -e "install.packages(c('littler', 'docopt', 'tidyverse', 'sparklyr', 'keras', 'tensorflow'), repo = '$MRAN')" \
&& chown -R root:staff /usr/local/lib/R/site-library \
&& chmod -R g+wx /usr/local/lib/R/site-library \
&& ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
&& ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
&& ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \

4
docker-image/r/spark2.2.0/base/Dockerfile
Просмотреть файл

@ -96,8 +96,6 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
## Add a library directory (for user-installed packages)
&& mkdir -p /usr/local/lib/R/site-library \
&& chown root:staff /usr/local/lib/R/site-library \
&& chmod g+wx /usr/local/lib/R/site-library \
## Fix library path
&& echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
@ -109,6 +107,8 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl'); Sys.setenv(SPARK_HOME ='"$SPARK_HOME"')" >> /usr/local/lib/R/etc/Rprofile.site \
## Use littler installation scripts
&& Rscript -e "install.packages(c('littler', 'docopt', 'tidyverse', 'sparklyr'), repo = '$MRAN')" \
&& chown -R root:staff /usr/local/lib/R/site-library \
&& chmod -R g+wx /usr/local/lib/R/site-library \
&& ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
&& ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
&& ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \

10
docker-image/r/spark2.2.0/gpu/Dockerfile
Просмотреть файл

@ -110,16 +110,12 @@ RUN apt-get update \
&& make \
&& make install \
## Add a default CRAN mirror
&& echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" \
>> /usr/local/lib/R/etc/Rprofile.site \
&& echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/local/lib/R/etc/Rprofile.site \
## Add a library directory (for user-installed packages)
&& mkdir -p /usr/local/lib/R/site-library \
&& chown root:staff /usr/local/lib/R/site-library \
&& chmod g+wx /usr/local/lib/R/site-library \
## Fix library path
&& echo "R_LIBS_USER='/usr/local/lib/R/site-library'" >> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" \
>> /usr/local/lib/R/etc/Renviron \
&& echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron \
## install packages from date-locked MRAN snapshot of CRAN
&& [ -z "$BUILD_DATE" ] && BUILD_DATE=$(TZ="America/Los_Angeles" date -I) || true \
&& MRAN=https://mran.microsoft.com/snapshot/${BUILD_DATE} \
@ -128,6 +124,8 @@ RUN apt-get update \
&& echo "options(repos = c(CRAN='$MRAN'), download.file.method = 'libcurl');" >> /usr/local/lib/R/etc/Rprofile.site \
&& echo "Sys.setenv(SPARK_HOME ='"$SPARK_HOME"');" >> /usr/local/lib/R/etc/Rprofile.site \
&& Rscript -e "install.packages(c('littler', 'docopt', 'tidyverse', 'sparklyr', 'keras', 'tensorflow'), repo = '$MRAN')" \
&& chown -R root:staff /usr/local/lib/R/site-library \
&& chmod -R g+wx /usr/local/lib/R/site-library \
&& ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
&& ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
&& ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \