* force add PATH to current user
* checkin docker setup script
* Update cluster_setup.sh
* install docker and start container on cluster setup
* WIP: Run task in container
* fix merge conflict
* run tasks and merge task from within container
* refactor code to proper docker commands and make a single R container per job
* refactor command line utils into its own file
* refactor job utilities into its own file
* move cluster setup script to inst folder
* remove unnecessary curl installs
* remove starting container from setup script
* check in WIP
* add apt_install file
* make required directories
* update cluster setup files as needed
* include libxml2 packages in apt installs
* working cluster create with cran and github dependencies
* update job prep to install apt-get and not each task
* use rocker containers instead of r-base
* remove unused & commented code
* remove unused install function
* address several lintr issues
* initial test dockerfile
* add spacing between commands
* temporarily point wget to feature branch
* update bioconductor install for non-jobPrep installs
* Delete Dockerfile
* minor changes to install bioc
* resolve merge conflicts
* update cluster to correctly install BioC packages using install_bioconductor
* fix issue where some packages were not getting installed
* add missing BioConductorCommand initializer
* remove print lines
* initial dockerfile implementations
* update docker files
* Only install packages if they are required
* Remove requirement on bioconductor installer script on start task
* remove duplicate environment variable entry
* update docs for container support
* update version to 0.6.0
* refactor changes updates
* remove poorly formatted whitespaces
* add full path to pacakges directory
* fix docker command line
* update file share sample
* update azure files cluster name
* update mandelbrot sample
* update package management sample
* update plyr samples
* make montecarlo sample more consistent
* update montecarlo sample
* remove plyr example
* fix bad environment pointer
* fix linter issues
* more linter fixes
* more linter issues
* use latest rAzureBatch version
* update resource files example
* remove reference to deleted sample
* pr feedback
* PR docs feedback
* Print errors from worker (#154)
* Fixed pool package command line lintr test
* Package installation tests fixed - too long lines
* Fixed json in customize cluster docs
* Fix: Typos in customize cluster docs
* Cleaning up files
* Feature/githubbiopackage (#150)
* install github package worked for foreach loop
* fix lintr error
* tests for github and bioc packages installation
* lintr fix
* add back lost code due to merge and update docs
* The Travis CI build failed for feature/githubbiopackage
* remove incorrect parameter for install_github
* Updated job prep task to have default command
* Use the latest version of rAzureBatch
* Updated description + Generate cluster config
* Fix: Bioconductor and Github packages installation (#155)
* Added multiple package install test and fix obj reading args
* Fixed naming for packages install
* Replaced validation exclusion for linter
* Fixed test validate test
* Fixing all interactive tests with skip
* Fixed renaming validation
* Removed default test - cannot be tested
* Removed in validation
* Added cluster package install tests (#156)
* fix bug in metadata handling for packages and enableCloudCombine
* call long running job api in test
* update test
* add test for long running job feature
* code style fix
* update job state description in readme
* use list for job state filter
* Added set chunk size
* Added cluster configuration validation function (#30)
* Added pool config test validation
* Added a fix for validation
* Added if checks for null tests and more validation tests
* Install R packages at job run time (#29)
* Added cran/github installation scripts
* Added package installation tests
* Upgraded package version to 0.3.2
* Output file support (#40)
* Output files support
* Added createOutputFile method
* output files readme documentation
* added tests and find container sas
* Added more detailed variable names
* Enable/disable merge task (#39)
* Merge task pass params
* Fixed enableMerge cases
* Merge task documentation on README.md
* Fixed typo on merge task description
* Update doAzureParallel.R
* Changed enableMerge to enableCloudCombine
* convert getJobResult output from binary to text
* Only write vector to temp file
* save cloud merge enabled, chunk size and packages as job metadata
* update cloudMergeEnabled to cloudCombineEnabled
* Fix/backwards compatible (#68)
* Added backwards compatible in make cluster
* Added deprecated config validator
* Added mismatch label
* Added validation for quota limits and bad getPool requests in waitForNodesToComplete (#52)
* Added validation for quota limits and bad getPool requests
* Fixed based on PR
* Fixed progress bar layout to use switch statements instead of if statements
* Changed clusterId to poolId
* Added comments and fixed messages
* Added running state to the node status
* Reformatted lines for function
* Added end statement for node completion
* Feature/custom script and reduce (#70)
* Added custom scripts and removed dependencies parameter
* Updated roxygen tool version
* Added parallelThreads support
* Added test coverage
* Removed verbose message on command line
* Added Reduce function for group of tasks
* Fix build because of doc semantics mismatch with function
* Removed unused function
* Added command line arg
* Added docs for custom script
* Moved customize cluster to separate doc for future usage
* Fixed typo
* Bug - Waiting for tasks to completion function ends too early (#69)
* Moved wait for tasks to complete to doAzureParallel utility
* Removed unneeded variables and progress
* Fixed camel case for skiptoken
* Travis/lintr (#72)
* Added lintr config file
* Added travis github package installation
* Removed snake case rule
* Fixed documents on doAzureParallel
* Based on lintr default_settins docs, correctly added default rules
* Updated lintr package to use object_name_style
* Added package :: operator
* Reformatted after merge
* Fixed command line tests
* Upgraded roxygen to 6.0.1
* Cluster config docs
* Removed additional delete job
* add getJob api (#84)
* add getJob api
* reformat code
* update styling in utility file
* fix code styling
* update chunksize to chunkSize and remove unused code
* handle job metadata in getJob api
* fix styling issue
* update getJobList parameter from list of job ids to filter object, and output jobs status in data frame (#128)
long running job support, getJob, getJobList and getJobResult implementation
* reformat code
* update styling in utility file
* fix code styling
* update chunksize to chunkSize and remove unused code
* handle job metadata in getJob api
* fix styling issue
* use counting service api in getJobList
* fix coding style
* return data frame from getJobList
* update getJobList parameter from job id list to filter by state
* reformat code
* update description for getJobList
* remove dup code
* address review feedback
* jobId parameter check for getJobResult
* update documentation for long run job
* update version to 0.5.0
* update version
* address review feedback
* update chunkSizeValue to chunkSizeKeyValuePair
* Fixed worker and merger scripts
* Fixed verbose logs based on PR comments
* Added documentation on error handling
* Fixed header on table markdown
* Fixed based on PR comments
* update docs to include github auth feature
* pr feedback for more verbose context
* move github auth instructions to pacakge management document
* remove github specific link from readme
* Added set chunk size
* Added cluster configuration validation function (#30)
* Added pool config test validation
* Added a fix for validation
* Added if checks for null tests and more validation tests
* Install R packages at job run time (#29)
* Added cran/github installation scripts
* Added package installation tests
* Upgraded package version to 0.3.2
* Output file support (#40)
* Output files support
* Added createOutputFile method
* output files readme documentation
* added tests and find container sas
* Added more detailed variable names
* Enable/disable merge task (#39)
* Merge task pass params
* Fixed enableMerge cases
* Merge task documentation on README.md
* Fixed typo on merge task description
* Update doAzureParallel.R
* Changed enableMerge to enableCloudCombine
* Fix/backwards compatible (#68)
* Added backwards compatible in make cluster
* Added deprecated config validator
* Added mismatch label
* Added validation for quota limits and bad getPool requests in waitForNodesToComplete (#52)
* Added validation for quota limits and bad getPool requests
* Fixed based on PR
* Fixed progress bar layout to use switch statements instead of if statements
* Changed clusterId to poolId
* Added comments and fixed messages
* Added running state to the node status
* Reformatted lines for function
* Added end statement for node completion
* Feature/custom script and reduce (#70)
* Added custom scripts and removed dependencies parameter
* Updated roxygen tool version
* Added parallelThreads support
* Added test coverage
* Removed verbose message on command line
* Added Reduce function for group of tasks
* Fix build because of doc semantics mismatch with function
* Removed unused function
* Added command line arg
* Added docs for custom script
* Moved customize cluster to separate doc for future usage
* Fixed typo
* Bug - Waiting for tasks to completion function ends too early (#69)
* Moved wait for tasks to complete to doAzureParallel utility
* Removed unneeded variables and progress
* Fixed camel case for skiptoken
* Travis/lintr (#72)
* Added lintr config file
* Added travis github package installation
* Removed snake case rule
* Fixed documents on doAzureParallel
* Based on lintr default_settins docs, correctly added default rules
* Updated lintr package to use object_name_style
* Added package :: operator
* Reformatted after merge
* Fixed command line tests
* Upgraded roxygen to 6.0.1
* Cluster config docs
* Removed additional delete job
* Fixed warning descriptions in makeCluster
* Ramped up versions for DESCRIPTION
* Updated CHANGELOG to 0.4.0
* Fixed environmentSettings style from merge conflict
* Fixed cluster warning naming style
* Added set chunk size
* Adding resource files on pool creation
* renaming generate file functions
* Moved worker/merger scripts to doAzureParallel and created common job env
* Added stdout and stderr logs in uploads
* added to docs / README
* Switched params for cluster and added examples
* setCreds, resizeCluster, job management
* cred generator update
* Added samples, moved autoscale, and low-pri/output files
* Added documentation on methods for ??R feature
* Added export for makeCluster
* Namespace missing export
* clusterSetting param name
* cluster id param name
* NumOfNodes param for wait nodes completion fix
* Added proper naming for registerDoAzureParallel
* readme update'
* typo readme
* low pri in readme
* monte carlo simulation
* Added new sample for sas resource files
* caret + annotation on montecarlo sim
* samples readme.md
* samples readme
* Fixed the resource files to use proper storage account for example
* Update README.md
* Update 11-autoscale.md
* Fixed autoscale formula for task queue to take maxTaskPerNode
* Added named args to createSasToken
* Update resource-files-example.R
* Update 21-distributing-data.md
* Renamed samples files to underscore format
* Update 21-distributing-data.md
* Update README.md
* Update README.md
* Update README.md
* Edited changelog file
* Update plyr_example.R
* Update README.md
* put images into vignette folder
* Created 00-azure-introduction.md
* Created 10-vm-sizes.md
* Update VM sizes link in docs/README.md
* Create 20-package-management.md
* Updated README.md with Azure Batch limitations
* Create 21-distributing-data.md
* Create 22-parallelizing-cores.md
* Create 23-persistent-storage.md
* standardized foreach keyword and pool keyword
Pablo Selem
zfengms
Brian
Dan Tenenbaum
JS
Microsoft Open Source