reorg files and folders

2014-11-03 11:39:58 +08:00 · 2014-11-03 11:39:58 +08:00 · 11b42eef90
--- a/Documents/LinuxNodeFiles/nm/ReportUri
+++ b/Documents/LinuxNodeFiles/nm/ReportUri
@ -1 +0,0 @@
-http://192.168.0.4:50000/api/dockervm/computenodereported
--- a/Documents/LinuxNodeFiles/namd/README.txt
+++ b/Documents/LinuxNodeFiles/namd/README.txt
--- a/Documents/LinuxNodeFiles/namd/announce.txt
+++ b/Documents/LinuxNodeFiles/namd/announce.txt
--- a/Documents/LinuxNodeFiles/namd/charmrun
+++ b/Documents/LinuxNodeFiles/namd/charmrun
--- a/Documents/LinuxNodeFiles/namd/flipbinpdb
+++ b/Documents/LinuxNodeFiles/namd/flipbinpdb
--- a/Documents/LinuxNodeFiles/namd/flipdcd
+++ b/Documents/LinuxNodeFiles/namd/flipdcd
--- a/Documents/LinuxNodeFiles/namd/lib/abf/abf.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/abf.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/abf_script.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/abf_script.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/abscissa.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/abscissa.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/distance-com.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/distance-com.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/distance.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/distance.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/pkgIndex.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/pkgIndex.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/vectors.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/vectors.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/xyDistance.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/xyDistance.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/zCoord-1atom.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/zCoord-1atom.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf/zCoord.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/abf/zCoord.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/abf_integrate/abf_data.cpp
+++ b/Documents/LinuxNodeFiles/namd/lib/abf_integrate/abf_data.cpp
--- a/Documents/LinuxNodeFiles/namd/lib/abf_integrate/abf_data.h
+++ b/Documents/LinuxNodeFiles/namd/lib/abf_integrate/abf_data.h
--- a/Documents/LinuxNodeFiles/namd/lib/abf_integrate/abf_integrate.cpp
+++ b/Documents/LinuxNodeFiles/namd/lib/abf_integrate/abf_integrate.cpp
--- a/Documents/LinuxNodeFiles/namd/lib/colvars/colvarproxy_standalone.C
+++ b/Documents/LinuxNodeFiles/namd/lib/colvars/colvarproxy_standalone.C
--- a/Documents/LinuxNodeFiles/namd/lib/colvars/colvarproxy_standalone.h
+++ b/Documents/LinuxNodeFiles/namd/lib/colvars/colvarproxy_standalone.h
--- a/Documents/LinuxNodeFiles/namd/lib/init.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/init.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/README
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/README
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/examples/README.examples
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/examples/README.examples
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/examples/example_ramd-md_output/example_ramd-md.namdout
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/examples/example_ramd-md_output/example_ramd-md.namdout
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/examples/example_ramd_output/example_ramd.namdout
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/examples/example_ramd_output/example_ramd.namdout
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/examples/run_ramd-md_example.sh
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/examples/run_ramd-md_example.sh
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/examples/run_ramd_example.sh
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/examples/run_ramd_example.sh
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/scripts/ramd-4.1.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/scripts/ramd-4.1.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/scripts/ramd-4.1_script.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/scripts/ramd-4.1_script.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/ramd/scripts/vectors.tcl
+++ b/Documents/LinuxNodeFiles/namd/lib/ramd/scripts/vectors.tcl
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca.namd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca.namd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/fep_solv.conf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/fep_solv.conf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/fep_solv_base.namd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/fep_solv_base.namd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/par_all22_prot_cmap.inp
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/par_all22_prot_cmap.inp
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/readme.txt
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/readme.txt
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/solv_benz.fep
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/solv_benz.fep
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/solv_benz_namd.pdb
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/solv_benz_namd.pdb
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/solv_benz_namd.psf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/solv_benz_namd.psf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/extract-repul.cpp
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/extract-repul.cpp
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/fep_solv.conf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/fep_solv.conf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/get_fe.sh
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/get_fe.sh
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/sort-data-fe.cpp
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/sort-data-fe.cpp
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/sum_fe.pl
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/sum_fe.pl
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/wham-fep.cpp
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/wham-fep.cpp
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/wham_data_solv.sh
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/wham_data_solv.sh
--- a/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/wham_fe.sh
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/FEP_wca/wham/wham_fe.sh
--- a/Documents/LinuxNodeFiles/namd/lib/replica/README.txt
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/README.txt
--- a/Documents/LinuxNodeFiles/namd/lib/replica/clone_reps.vmd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/clone_reps.vmd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin.params
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin.params
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin.pdb
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin.pdb
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin.psf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin.psf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin_base.namd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/alanin_base.namd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/fold_alanin.conf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/fold_alanin.conf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/job0.conf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/job0.conf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/job1.conf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/job1.conf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/load_all.vmd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/load_all.vmd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/example/unfolded.pdb
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/example/unfolded.pdb
--- a/Documents/LinuxNodeFiles/namd/lib/replica/make_output_dirs.sh
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/make_output_dirs.sh
--- a/Documents/LinuxNodeFiles/namd/lib/replica/replica.namd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/replica.namd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/replica_util.namd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/replica_util.namd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/show_replicas.vmd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/show_replicas.vmd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella.namd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella.namd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin.params
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin.params
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin.pdb
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin.pdb
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin.psf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin.psf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin_base.namd
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/alanin_base.namd
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/colvars.conf
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/colvars.conf
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.0.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.0.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.0.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.0.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.0.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.0.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.1.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.1.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.1.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.1.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.1.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.1.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.10.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.10.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.10.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.10.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.10.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.10.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.11.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.11.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.11.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.11.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.11.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.11.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.12.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.12.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.12.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.12.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.12.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.12.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.13.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.13.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.13.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.13.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.13.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.13.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.14.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.14.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.14.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.14.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.14.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.14.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.15.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.15.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.15.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.15.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.15.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.15.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.2.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.2.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.2.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.2.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.2.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.2.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.3.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.3.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.3.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.3.vel
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.3.xsc
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.3.xsc
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.4.coor
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.4.coor
--- a/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.4.vel
+++ b/Documents/LinuxNodeFiles/namd/lib/replica/umbrella/input/alanin.initial.4.vel
--- a/Показать больше
+++ b/Показать больше
				`@ -1 +0,0 @@`
				`http://192.168.0.4:50000/api/dockervm/computenodereported`