зеркало из https://github.com/dotnetbio/bio.git
Merge pull request #1 from vphadnav/vphadnav/vs2015_nunit3_console
update compile on Windows and run tests
This commit is contained in:
Venkatesh Phadnavis
GitHub
Коммит
4d463ab378
18
src/Bio.sln
18
src/Bio.sln
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@ -1,14 +1,12 @@
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Microsoft Visual Studio Solution File, Format Version 12.00
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# Visual Studio 14
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VisualStudioVersion = 14.0.23107.0
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VisualStudioVersion = 14.0.25123.0
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MinimumVisualStudioVersion = 10.0.40219.1
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Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Bio.Core", "Source\Framework\Bio.Core\Bio.Core.csproj", "{DFB9C4E2-C98C-4401-A650-756ABAB52663}"
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EndProject
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Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Shims", "Shims", "{9AD1F00F-4C1B-49A6-8525-4FFAED741F22}"
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EndProject
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Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Bio.Platform.Helpers", "Source\Framework\Shims\Bio.Platform.Helpers\Bio.Platform.Helpers.csproj", "{83CBB611-4049-456A-B87B-0B2CFC4797FA}"
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EndProject
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Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Bio.Platform.Helpers.Desktop", "Source\Framework\Shims\Bio.Platform.Helpers.Desktop\Bio.Platform.Helpers.Desktop.csproj", "{2A6BB04D-047F-4F04-9AFB-9BF8941A292A}"
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EndProject
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Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Bio.Platform.Helpers.iOS", "Source\Framework\Shims\Bio.Platform.Helpers.iOS\Bio.Platform.Helpers.iOS.csproj", "{9DE0E489-511D-4E4C-BBDA-D47C887BAF93}"
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@ -61,10 +59,7 @@ Global
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GlobalSection(SharedMSBuildProjectFiles) = preSolution
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Source\Tests\TestData\TestData.projitems*{fc09fa89-39a2-4db7-bb26-4df616918506}*SharedItemsImports = 4
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Source\Framework\Shared\Shared.projitems*{14a64db3-6621-4950-b25d-e24615d9386b}*SharedItemsImports = 4
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Source\Framework\Shared\Shared.projitems*{c1249952-18e4-4d6d-bd8d-32a51af2d3f3}*SharedItemsImports = 4
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Source\Framework\Shared\Shared.projitems*{a482be8f-67d5-4991-84bd-da3bf6ed84fa}*SharedItemsImports = 4
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Source\Tests\TestData\TestData.projitems*{64b51721-d4fd-4da6-b722-95dbae696f03}*SharedItemsImports = 13
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Source\Framework\Shared\Shared.projitems*{8647c589-c5b4-49ef-b722-3b8a12a2e13c}*SharedItemsImports = 4
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Source\Framework\Shared\Shared.projitems*{bdb423a3-d3b6-434c-96ba-102025e2ea3b}*SharedItemsImports = 13
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EndGlobalSection
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GlobalSection(SolutionConfigurationPlatforms) = preSolution
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@ -88,16 +83,6 @@ Global
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{DFB9C4E2-C98C-4401-A650-756ABAB52663}.Release|ARM.ActiveCfg = Release|Any CPU
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{DFB9C4E2-C98C-4401-A650-756ABAB52663}.Release|x64.ActiveCfg = Release|Any CPU
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{DFB9C4E2-C98C-4401-A650-756ABAB52663}.Release|x86.ActiveCfg = Release|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Debug|Any CPU.Build.0 = Debug|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Debug|ARM.ActiveCfg = Debug|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Debug|x64.ActiveCfg = Debug|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Debug|x86.ActiveCfg = Debug|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Release|Any CPU.ActiveCfg = Release|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Release|Any CPU.Build.0 = Release|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Release|ARM.ActiveCfg = Release|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Release|x64.ActiveCfg = Release|Any CPU
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{83CBB611-4049-456A-B87B-0B2CFC4797FA}.Release|x86.ActiveCfg = Release|Any CPU
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{2A6BB04D-047F-4F04-9AFB-9BF8941A292A}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
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{2A6BB04D-047F-4F04-9AFB-9BF8941A292A}.Debug|Any CPU.Build.0 = Debug|Any CPU
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{2A6BB04D-047F-4F04-9AFB-9BF8941A292A}.Debug|ARM.ActiveCfg = Debug|Any CPU
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@ -275,7 +260,6 @@ Global
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HideSolutionNode = FALSE
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EndGlobalSection
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GlobalSection(NestedProjects) = preSolution
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{83CBB611-4049-456A-B87B-0B2CFC4797FA} = {9AD1F00F-4C1B-49A6-8525-4FFAED741F22}
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{2A6BB04D-047F-4F04-9AFB-9BF8941A292A} = {9AD1F00F-4C1B-49A6-8525-4FFAED741F22}
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{9DE0E489-511D-4E4C-BBDA-D47C887BAF93} = {9AD1F00F-4C1B-49A6-8525-4FFAED741F22}
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{17D7434B-E7F2-43F4-BB1E-FC40FDC5FB0B} = {9AD1F00F-4C1B-49A6-8525-4FFAED741F22}
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@ -15,7 +15,7 @@
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<AndroidResgenFile>Resources\Resource.Designer.cs</AndroidResgenFile>
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<GenerateSerializationAssemblies>Off</GenerateSerializationAssemblies>
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<AndroidUseLatestPlatformSdk>True</AndroidUseLatestPlatformSdk>
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<TargetFrameworkVersion>v5.0</TargetFrameworkVersion>
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<TargetFrameworkVersion>v6.0</TargetFrameworkVersion>
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</PropertyGroup>
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<PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|AnyCPU' ">
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<DebugSymbols>true</DebugSymbols>
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@ -61,10 +61,6 @@
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<Project>{dfb9c4e2-c98c-4401-a650-756abab52663}</Project>
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<Name>Bio.Core</Name>
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</ProjectReference>
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<ProjectReference Include="..\Shims\Bio.Platform.Helpers\Bio.Platform.Helpers.csproj">
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<Project>{83cbb611-4049-456a-b87b-0b2cfc4797fa}</Project>
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<Name>Bio.Platform.Helpers</Name>
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</ProjectReference>
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</ItemGroup>
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<Import Project="..\Shared\Shared.projitems" Label="Shared" Condition="Exists('..\Shared\Shared.projitems')" />
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<Import Project="$(MSBuildExtensionsPath)\Xamarin\Android\Xamarin.Android.CSharp.targets" />
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@ -0,0 +1,82 @@
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<?xml version="1.0" encoding="utf-8"?>
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<Project ToolsVersion="4.0" DefaultTargets="Build" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
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<PropertyGroup>
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<Configuration Condition=" '$(Configuration)' == '' ">Debug</Configuration>
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<Platform Condition=" '$(Platform)' == '' ">AnyCPU</Platform>
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<ProductVersion>8.0.30703</ProductVersion>
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<SchemaVersion>2.0</SchemaVersion>
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<ProjectGuid>{C1249952-18E4-4D6D-BD8D-32A51AF2D3F3}</ProjectGuid>
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<ProjectTypeGuids>{EFBA0AD7-5A72-4C68-AF49-83D382785DCF};{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}</ProjectTypeGuids>
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<OutputType>Library</OutputType>
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<AppDesignerFolder>Properties</AppDesignerFolder>
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<RootNamespace>Bio</RootNamespace>
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<AssemblyName>Bio.Android</AssemblyName>
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<FileAlignment>512</FileAlignment>
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<AndroidResgenFile>Resources\Resource.Designer.cs</AndroidResgenFile>
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<GenerateSerializationAssemblies>Off</GenerateSerializationAssemblies>
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<AndroidUseLatestPlatformSdk>True</AndroidUseLatestPlatformSdk>
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<TargetFrameworkVersion>v5.0</TargetFrameworkVersion>
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</PropertyGroup>
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<PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Debug|AnyCPU' ">
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<DebugSymbols>true</DebugSymbols>
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<DebugType>full</DebugType>
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<Optimize>false</Optimize>
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<OutputPath>bin\Debug\</OutputPath>
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<DefineConstants>DEBUG;TRACE</DefineConstants>
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<ErrorReport>prompt</ErrorReport>
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<WarningLevel>4</WarningLevel>
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<DocumentationFile>bin\Debug\Bio.Android.XML</DocumentationFile>
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</PropertyGroup>
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<PropertyGroup Condition=" '$(Configuration)|$(Platform)' == 'Release|AnyCPU' ">
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<DebugType>pdbonly</DebugType>
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<Optimize>true</Optimize>
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<OutputPath>bin\Release\</OutputPath>
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<DefineConstants>TRACE</DefineConstants>
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<ErrorReport>prompt</ErrorReport>
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<WarningLevel>4</WarningLevel>
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<DocumentationFile>bin\Release\Bio.Android.XML</DocumentationFile>
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</PropertyGroup>
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<ItemGroup>
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<Reference Include="Mono.Android" />
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<Reference Include="mscorlib" />
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<Reference Include="System" />
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<Reference Include="System.Core" />
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<Reference Include="System.Xml.Linq" />
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<Reference Include="System.Xml" />
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<Reference Include="System.Runtime" />
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<Reference Include="System.IO" />
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</ItemGroup>
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<ItemGroup>
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<Compile Include="Resources\Resource.Designer.cs" />
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<Compile Include="Properties\AssemblyInfo.cs" />
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</ItemGroup>
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<ItemGroup>
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<None Include="Resources\AboutResources.txt" />
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</ItemGroup>
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<ItemGroup>
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<AndroidResource Include="Resources\Values\Strings.xml" />
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</ItemGroup>
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<ItemGroup>
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<ProjectReference Include="..\Bio.Core\Bio.Core.csproj">
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<Project>{dfb9c4e2-c98c-4401-a650-756abab52663}</Project>
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<Name>Bio.Core</Name>
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</ProjectReference>
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<ProjectReference Include="..\Shims\Bio.Platform.Helpers\Bio.Platform.Helpers.csproj">
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<Project>{83cbb611-4049-456a-b87b-0b2cfc4797fa}</Project>
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<Name>Bio.Platform.Helpers</Name>
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</ProjectReference>
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</ItemGroup>
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<Import Project="..\Shared\Shared.projitems" Label="Shared" Condition="Exists('..\Shared\Shared.projitems')" />
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<Import Project="$(MSBuildExtensionsPath)\Xamarin\Android\Xamarin.Android.CSharp.targets" />
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<PropertyGroup>
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<PostBuildEvent>
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</PostBuildEvent>
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</PropertyGroup>
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<!-- To modify your build process, add your task inside one of the targets below and uncomment it.
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Other similar extension points exist, see Microsoft.Common.targets.
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<Target Name="BeforeBuild">
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</Target>
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<Target Name="AfterBuild">
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</Target>
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-->
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</Project>
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@ -1,15 +1,15 @@
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#pragma warning disable 1591
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// ------------------------------------------------------------------------------
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// <autogenerated>
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//------------------------------------------------------------------------------
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// <auto-generated>
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// This code was generated by a tool.
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// Mono Runtime Version: 4.0.30319.17020
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// Runtime Version:4.0.30319.42000
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//
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// Changes to this file may cause incorrect behavior and will be lost if
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// the code is regenerated.
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// </autogenerated>
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// ------------------------------------------------------------------------------
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// </auto-generated>
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//------------------------------------------------------------------------------
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[assembly: Android.Runtime.ResourceDesignerAttribute("Bio.Resource", IsApplication=false)]
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[assembly: global::Android.Runtime.ResourceDesignerAttribute("Bio.Resource", IsApplication=false)]
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namespace Bio
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{
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@ -43,10 +43,6 @@
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<Project>{dfb9c4e2-c98c-4401-a650-756abab52663}</Project>
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<Name>Bio.Core</Name>
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</ProjectReference>
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<ProjectReference Include="..\Shims\Bio.Platform.Helpers\Bio.Platform.Helpers.csproj">
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<Project>{83cbb611-4049-456a-b87b-0b2cfc4797fa}</Project>
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<Name>Bio.Platform.Helpers</Name>
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</ProjectReference>
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</ItemGroup>
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<ItemGroup>
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<Reference Include="System" />
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@ -1578,8 +1578,10 @@ namespace Bio.TestAutomation.Util
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public const string OutputFilePathNode = "OutputFilePath";
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public const string ParserFileTypes = ".txt, .tre, .newick";
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public const string ParserName = "Newick";
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public const string ParserDescription = "Reads from a source of text that is formatted according to the Newick flat\nfile specification, and converts the data to in-memory PhylogeneticTree object.";
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public const string FormatDescription = "Writes a PhylogeneticTree to a particular location, usually a file. The output is formatted\naccording to the Newick format.";
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public static readonly string ParserDescription = "Reads from a source of text that is formatted according to the Newick flat" +
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System.Environment.NewLine + "file specification, and converts the data to in-memory PhylogeneticTree object.";
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public static readonly string FormatDescription = "Writes a PhylogeneticTree to a particular location, usually a file. The output is formatted" +
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System.Environment.NewLine + "according to the Newick format.";
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public const string SpecialCharSmallSizePhyloTreeNode =
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"SpecialCharSmallSizePhyloTree";
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public const string InvalidateNewickParseNode =
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@ -1944,10 +1946,12 @@ namespace Bio.TestAutomation.Util
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public const string CIGARNode = "CIGAR";
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public const string SAMFileWithRefNode = "SAMFileWithRef";
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public const string ReferenceSeqNode = "ReferenceSeq";
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public const string SAMParserDescription =
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"A SAMParser reads from a source of text that is formatted according to the SAM \nfile specification, and converts the data to in-memory SequenceAlignmentMap objects.";
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public const string SAMFormatterDescription =
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"Writes a SequenceAlignmentMap to a particular location, usually a file. The output is formatted\naccording to the SAM file format.";
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public static readonly string SAMParserDescription =
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"A SAMParser reads from a source of text that is formatted according to the SAM " +
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System.Environment.NewLine + "file specification, and converts the data to in-memory SequenceAlignmentMap objects.";
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public static readonly string SAMFormatterDescription =
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"Writes a SequenceAlignmentMap to a particular location, usually a file. The output is formatted" +
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System.Environment.NewLine + "according to the SAM file format.";
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public const string SAMName = "SAM";
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public const string SAMFileType = ".sam";
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public const string EmptySamFileNode =
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@ -269,9 +269,8 @@
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</Target>
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-->
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<ItemGroup />
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<ItemGroup>
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<Folder Include="PacBio\" />
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<Folder Include="Variant\" />
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<Service Include="{82A7F48D-3B50-4B1E-B82E-3ADA8210C358}" />
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</ItemGroup>
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<ItemGroup />
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</Project>
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@ -145,7 +145,7 @@ namespace Bio.Tests
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var seq = new QualitativeSequence(Alphabets.DNA,
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FastQFormatType.Illumina_v1_3, seqData, qualityScores);
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string actualString = seq.ToString();
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string expectedString = "ATCG\nAAAB"; // This is dangerously platform specific
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string expectedString = "ATCG" + System.Environment.NewLine + "AAAB";
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Assert.AreEqual(expectedString, actualString);
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}
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