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bio
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Граф коммитов

  • b3b866c067
         Merge pull request #38 from acesnik/master master Nigel Delaney 2018-01-26 18:56:48 -0800
  • 3f96c9bd0d fix Anthony 2018-01-25 15:10:37 -0600
  • 59f183a6c7 Update comments Anthony 2018-01-25 15:08:41 -0600
  • 649da1a5e5 Update ambiguous 3-letter notation to formal ones. Add get methods for symbol-abbrev mappings. Anthony 2018-01-25 15:05:46 -0600
  • 89acab31f3 alphabet fix Anthony 2018-01-24 14:08:12 -0600
  • 530ac8687f Mummer alphabet change. Anthony 2018-01-24 13:54:53 -0600
  • e5d8df37ae Changes to AmbiguousProteinAlphabet Anthony 2018-01-24 13:50:35 -0600
  • 1a8134b733 Add three letter abbreviations to ProteinAlphabet Anthony 2018-01-24 13:43:35 -0600
  • 41966923c0
         Merge pull request #36 from dotnetbio/bam_parse_perf Nigel Delaney 2017-11-05 12:47:01 -0800
  • 3e9b557920 Shaves off another 10% of time Nigel Delaney 2017-11-05 12:11:46 -0800
  • 0668d7a99b VType Check Optimization Nigel Delaney 2017-11-05 11:46:46 -0800
  • 7aaa8506a4 Remove unnecessary check Nigel Delaney 2017-11-05 11:43:35 -0800
  • 5fe52bfc4f Merge pull request #31 from dotnetbio/fix_plat_tests Nigel Delaney 2017-09-26 19:17:29 -0400
  • e8d9caffec Fix Bed Test Nigel Delaney 2017-09-26 11:36:23 -0700
  • e782ac3b2a Fix Tests Nigel Delaney 2017-09-26 11:28:44 -0700
  • eada7d0f92 Case-Sensitive Changes Nigel Delaney 2017-09-25 23:17:43 -0700
  • 4b08d49878 Merge 5b61b8b3cb into e11a5a4f39 Nigel Delaney 2017-09-22 04:17:58 +0000
  • 5b61b8b3cb Update App Type Nigel Delaney 2017-09-22 00:02:42 -0400
  • e11a5a4f39 Fix more filename casing. Mark Smith 2017-09-21 15:45:59 -0500
  • 209a6cd84f Fix casing of test filenames. Mark Smith 2017-09-21 15:30:51 -0500
  • 6871909a4a Builds clean on macOS. Mark Smith 2017-09-21 14:35:55 -0500
  • 33b290f7b0 Fixup filename paths globally for test filenames + Linux. Mark Smith 2017-09-21 13:10:01 -0500
  • 819dacb5a8 Try to reactivate tests in travis. Mark Smith 2017-09-21 12:51:46 -0500
  • aa2df4cb25 Update tests, fix casing in solution file Mark Smith 2017-09-21 12:51:09 -0500
  • 46ffbb9417 Remove tests .. need to copy test files :/ Mark Smith 2017-09-21 09:32:17 -0500
  • 624986319f Remove old csproj file, fix casing in csproj. Mark Smith 2017-09-21 09:27:41 -0500
  • 5eff720df2 Fix path separator for travis (Linux) Mark Smith 2017-09-21 09:20:05 -0500
  • d7698f2af6 Bump PamSam version for NuGet Mark Smith 2017-09-21 09:16:53 -0500
  • 9e282fb515 Lots of bio goodness Mark Smith 2017-09-21 09:14:49 -0500
  • 48b7d8a18a Push V3 based on .NET Standard Mark Smith 2017-09-19 09:39:26 -0500
  • 41c8246825 Merge 4d463ab378 into 9b37835319 Venkatesh Phadnavis 2017-03-25 07:15:00 +0000
  • 4d463ab378 Merge pull request #1 from vphadnav/vphadnav/vs2015_nunit3_console Venkatesh Phadnavis 2017-03-15 13:40:34 -0700
  • 25824a54ab update compile on Windows and run tests Venkatesh Phadnavis 2017-03-15 13:35:50 -0700
  • c7a9caa838 Merge c9ab41c57e into 9b37835319 Venkatesh Phadnavis 2017-03-14 22:32:15 +0000
  • c9ab41c57e enable VS2015 with NUnit3 adapter to run the unit tests Venkatesh Phadnavis 2017-03-14 15:24:54 -0700
  • 2fa845eb55 Merge e2f605df4b into 9b37835319 Nigel Delaney 2016-10-14 20:02:24 +0000
  • 9b37835319 Merge pull request #23 from dotnetbio/pclremove V2-Final Nigel Delaney 2016-10-08 13:51:37 -0700
  • 2ca93855cc elete Shared Folder Nigel Delaney 2016-10-08 13:14:24 -0700
  • 7a8dda0406 Remove Shims Folder Nigel Delaney 2016-10-08 13:09:38 -0700
  • 4b4e08c358 Remove Platform Helpers Nigel Delaney 2016-10-08 13:08:39 -0700
  • 9dc9ab325f Merge pull request #20 from dotnetbio/vcallfix Nigel Delaney 2016-05-21 15:24:21 -0700
  • bce206929b Fix QV Bug Nigel Delaney 2016-05-21 15:22:22 -0700
  • e2f605df4b Add assembly test asmimprov Nigel Delaney 2016-05-04 22:46:23 -0700
  • 5647515409 Ignore failing tests Nigel Delaney 2016-05-04 21:40:41 -0700
  • c9f98b8324 Promote kmer count to UINT32 Nigel Delaney 2016-05-03 04:07:12 -0700
  • 6e48b53b91 Don't assume only two paths matter Nigel Delaney 2016-05-03 03:59:51 -0700
  • 18a6aee340 Pick best redundant path by average, not max Nigel Delaney 2016-05-03 03:47:02 -0700
  • 3d790b9de2 Add Test for SNP being removed Nigel Delaney 2016-05-03 03:09:06 -0700
  • 4c6664ecc8 Allow Redundant Paths to Consider Indels Nigel Delaney 2016-05-03 02:55:36 -0700
  • f1154331b3 Merge pull request #18 from dotnetbio/pacbdiags Nigel Delaney 2016-03-12 16:10:04 -0800
  • 52d6f8e974 Add diagnostic information for CCS reads Nigel Delaney 2016-03-12 15:58:59 -0800
  • 81b723402c Merge pull request #16 from cpatmoore/patch-1 Nigel Delaney 2016-02-22 21:14:58 -0800
  • 5a0f5d6cde Update License Charles Patrick Moore 2016-02-05 17:49:38 -0600
  • 94d40eb022 Create License Charles Patrick Moore 2016-02-05 17:37:58 -0600
  • 0a31ad3853 Merge pull request #14 from dotnetbio/aligncheck Nigel Delaney 2015-12-07 15:57:42 -0800
  • 4f25fd222e Validate Alignment Sequences Aren't Too Large Nigel Delaney 2015-12-07 15:00:47 -0800
  • 18243accda Merge 707e33adf0 into 0efe553df0 Nigel Delaney 2015-12-07 02:22:29 +0000
  • 707e33adf0 Remove copy command Nigel Delaney 2015-12-06 18:09:08 -0800
  • 0efe553df0 Generate More Debug Info Nigel Delaney 2015-12-06 17:43:38 -0800
  • 19b35d728a Robustify the NeedlemanWunsch Aligner Nigel Delaney 2015-12-06 16:50:30 -0800
  • 9a3aad059e Merge pull request #12 from dotnetbio/fixnw2 Nigel Delaney 2015-12-06 16:18:09 -0800
  • d3219c9390 Less Memory Usage / More Comments in NeedlemanWunschAligner Nigel Delaney 2015-12-06 15:27:58 -0800
  • d866b21ce5 Code Cleanup Nigel Delaney 2015-12-03 22:16:33 -0800
  • 436e32ce7f Merge pull request #11 from dotnetbio/fixnw Nigel Delaney 2015-12-03 20:15:32 -0800
  • 1f30511692 Fix NeedlmanWunschAligner Nigel Delaney 2015-12-03 18:56:00 -0800
  • 5a741fec20 Merge pull request #10 from dotnetbio/mumfix Nigel Delaney 2015-12-03 16:42:15 -0800
  • 3312788601 Cleanup the MUMmerAligner Class Nigel Delaney 2015-12-03 15:50:01 -0800
  • dc922c7d9b Merge pull request #9 from dotnetbio/fixoffset Nigel Delaney 2015-12-02 19:55:02 -0800
  • 27187d55f5 Fix indexing error in validation step. Nigel Delaney 2015-12-02 18:20:01 -0800
  • 9ead99ad23 BAMParser Extensibility Enhancements KRBeut 2015-11-10 19:44:23 -0800
  • b4159816cd Merge branch 'master' of https://github.com/dotnetbio/bio Nigel Delaney 2015-11-01 22:10:48 -0800
  • e9d6038f9b Avoid overwriting PQ flag with RQ if present Nigel Delaney 2015-11-01 22:10:21 -0800
  • 1db97fd9c2 Merge pull request #7 from jjby/master Nigel Delaney 2015-10-23 01:57:12 -0700
  • 56aa00aef6 Make the GenBank parser more robust to different indentations of the ORIGIN. Jakob Jakobsen Boysen 2015-10-22 16:35:30 +0200
  • 00270f4c04 Fix Travis CI File Nigel Delaney 2015-10-14 12:49:06 -0700
  • 543f843e47 Fix BioTools build Nigel Delaney 2015-10-14 12:43:13 -0700
  • 721e106a94 Fix the tests Nigel Delaney 2015-10-14 12:15:20 -0700
  • c4c1640c9c Update CCS Read Parser Nigel Delaney 2015-10-14 11:48:10 -0700
  • db7e581c28 Test Bio.Tools can build X-Plat Nigel Delaney 2015-10-12 18:43:08 -0700
  • 3b7f0320b8 Allow Bio.Tools to Build X-Platform Nigel Delaney 2015-10-12 18:33:15 -0700
  • de814a1108 Change SNPVariant to support AtEnd Feature Nigel Delaney 2015-08-22 13:53:31 -0700
  • f1486bedba Fix Typo Nigel Delaney 2015-08-07 17:51:40 -0700
  • a3cd0b9762 Replace integer RQ with float RQ Nigel Delaney 2015-08-07 16:36:46 -0700
  • 1d2b018818 Add more detailed alignment exception information. Nigel Delaney 2015-08-07 16:35:28 -0700
  • 2a6d36fcd6 Add note on QV for deletion mutations. Nigel Delaney 2015-08-07 16:34:58 -0700
  • 4f207b370a Merge pull request #2 from dotnetbio/variantcaller Nigel Delaney 2015-08-04 19:43:15 -0700
  • 3adad2773c Add Bio.Variant Namespace Nigel Delaney 2015-08-04 19:21:51 -0700
  • 885fef9064 Merge pull request #1 from dotnetbio/pbccs Nigel Delaney 2015-08-03 00:33:47 -0700
  • 0f45347362 Add Parser For PacBio CCS BAM Nigel Delaney 2015-08-03 00:10:43 -0700
  • 9e83946bf8 Add class documentation link. Nigel Delaney 2015-08-02 18:59:43 -0700
  • 0cbd8fe25a Update README with appveyor build info Nigel Delaney 2015-08-02 17:17:48 -0700
  • 213d93a380 Remove Script to Run Tests Nigel Delaney 2015-08-02 17:07:52 -0700
  • 37d60665be More fixes for tests Nigel Delaney 2015-08-01 15:56:13 -0700
  • 0d707c97fe Merge branch 'master' of https://github.com/dotnetbio/bio Nigel Delaney 2015-08-01 15:38:12 -0700
  • 77e8a30381 Ignore failing PADENA Tests Nigel Delaney 2015-08-01 15:37:36 -0700
  • 8cb80feda8 Fix line endings Nigel Delaney 2015-08-01 15:30:51 -0700
  • 2e7ccf2978 Add Travis CI Badge Nigel Delaney 2015-08-01 15:11:30 -0700
  • e46b40d35b Fix directory copy in Travis CI Nigel Delaney 2015-08-01 15:06:39 -0700
  • 065af31bf4 Add ls command to debug Travis CI Nigel Delaney 2015-08-01 14:56:06 -0700
  • 9515a966e9 Manually copy TestData Nigel Delaney 2015-08-01 13:42:06 -0700