d3/lib/science/science.stats.min.js

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(function(){function h(a,b){var c=b+1;while(c<a.length&&a[c]===0)c++;return c}function g(a,b,c,d){var e=d[0],f=d[1],g=h(b,f);if(g<a.length&&a[g]-a[c]<a[c]-a[e]){var i=h(b,e);d[0]=i,d[1]=g}}function f(a){return(a=1-a*a*a)*a*a}function e(a){var b=a.length,c=0;while(++c<b)if(a[c-1]>=a[c])return!1;return!0}function d(a){var b=a.length,c=-1;while(++c<b)if(!isFinite(a[c]))return!1;return!0}function c(a,b,c,d){var e=[],f=a+c,g=b.length,h=-1;while(++h<g)e[h]=(a*b[h]+c*d[h])/f;return e}function b(b,c){var d=c.length;if(b>d)return null;var e=[],f=[],g={},h=0,i=0,j,k,l;while(i<b){if(h===d)return null;var m=Math.floor(Math.random()*d);if(m in g)continue;g[m]=1,h++,k=c[m],l=!0;for(j=0;j<i;j++)if(a(k,e[j])){l=!1;break}l&&(e[i]=k,f[i]=m,i++)}return e}function a(a,b){if(!a||!b||a.length!==b.length)return!1;var c=a.length,d=-1;while(++d<c)if(a[d]!==b[d])return!1;return!0}science.stats={},science.stats.bandwidth={nrd0:function(a){var b=Math.sqrt(science.stats.variance(a));(lo=Math.min(b,science.stats.iqr(a)/1.34))||(lo=b)||(lo=Math.abs(a[1]))||(lo=1);return.9*lo*Math.pow(a.length,-0.2)},nrd:function(a){var b=science.stats.iqr(a)/1.34;return 1.06*Math.min(Math.sqrt(science.stats.variance(a)),b)*Math.pow(a.length,-0.2)}},science.stats.distance={euclidean:function(a,b){var c=a.length,d=-1,e=0,f;while(++d<c)f=a[d]-b[d],e+=f*f;return Math.sqrt(e)},manhattan:function(a,b){var c=a.length,d=-1,e=0;while(++d<c)e+=Math.abs(a[d]-b[d]);return e},minkowski:function(a){return function(b,c){var d=b.length,e=-1,f=0;while(++e<d)f+=Math.pow(Math.abs(b[e]-c[e]),a);return Math.pow(f,1/a)}},chebyshev:function(a,b){var c=a.length,d=-1,e=0,f;while(++d<c)f=Math.abs(a[d]-b[d]),f>e&&(e=f);return e},hamming:function(a,b){var c=a.length,d=-1,e=0;while(++d<c)a[d]!==b[d]&&e++;return e},jaccard:function(a,b){var c=a.length,d=-1,e=0;while(++d<c)a[d]===b[d]&&e++;return e/c},braycurtis:function(a,b){var c=a.length,d=-1,e=0,f=0,g,h;while(++d<c)g=a[d],h=b[d],e+=Math.abs(g-h),f+=Math.abs(g+h);return e/f}},science.stats.erf=function(a){var b=.254829592,c=-0.284496736,d=1.421413741,e=-1.453152027,f=1.061405429,g=.3275911,h=a<0?-1:1;a<0&&(h=-1,a=-a);var i=1/(1+g*a);return h*(1-((((f*i+e)*i+d)*i+c)*i+b)*i*Math.exp(-a*a))},science.stats.phi=function(a){return.5*(1+science.stats.erf(a/Math.SQRT2))},science.stats.kernel={uniform:function(a){return a<=1&&a>=-1?.5:0},triangular:function(a){return a<=1&&a>=-1?1-Math.abs(a):0},epanechnikov:function(a){return a<=1&&a>=-1?.75*(1-a*a):0},quartic:function(a){if(a<=1&&a>=-1){var b=1-a*a;return.9375*b*b}return 0},triweight:function(a){if(a<=1&&a>=-1){var b=1-a*a;return 35/32*b*b*b}return 0},gaussian:function(a){return 1/Math.sqrt(2*Math.PI)*Math.exp(-0.5*a*a)},cosine:function(a){return a<=1&&a>=-1?Math.PI/4*Math.cos(Math.PI/2*a):0}},science.stats.kde=function(){function d(d,e){var f=c.call(this,b);return d.map(function(c){var d=-1,e=0,g=b.length;while(++d<g)e+=a((c-b[d])/f);return[c,e/f/g]})}var a=science.stats.kernel.gaussian,b=[],c=science.stats.bandwidth.nrd;d.kernel=function(b){if(!arguments.length)return a;a=b;return d},d.sample=function(a){if(!arguments.length)return b;b=a;return d},d.bandwidth=function(a){if(!arguments.length)return c;c=science.functor(a);return d};return d},science.stats.kmeans=function(){function f(f){var g=f.length,h=[],i=[],j=1,l=0,m=b(e,f),n,o,p,q,r,s,t;while(j&&l<d){p=-1;while(++p<e)i[p]=0;o=-1;while(++o<g){q=f[o],s=Infinity,p=-1;while(++p<e)r=c.call(this,m[p],q),r<s&&(s=r,t=p);i[h[o]=t]++}n=[],o=-1;while(++o<g){q=h[o],r=n[q];if(r==null)n[q]=f[o].slice();else{p=-1;while(++p<r.length)r[p]+=f[o][p]}}p=-1;while(++p<e){q=n[p],r=1/i[p],o=-1;while(++o<q.length)q[o]*=r}j=0,p=-1;while(++p<e)if(!a(n[p],m[p])){j=1;break}m=n,l++}return{assignments:h,centroids:m}}var c=science.stats.distance.euclidean,d=1e3,e=1;f.k=function(a){if(!arguments.length)return e;e=a;return f},f.distance=function(a){if(!arguments.length)return c;c=a;return f};return f},science.stats.hcluster=function(){function d(d){var e=d.length,f=[],g=[],h=[],i=[],j,k,l,m,n,o,p,q;p=-1;while(++p<e){f[p]=0,h[p]=[],q=-1;while(++q<e)h[p][q]=p===q?Infinity:a(d[p],d