зеркало из https://github.com/microsoft/AzureTRE.git
169 строки
8.5 KiB
YAML
169 строки
8.5 KiB
YAML
---
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site_name: Azure TRE
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site_url: https://microsoft.github.io/AzureTRE
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site_description: Azure TRE
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site_author: Microsoft
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repo_url: https://github.com/microsoft/AzureTre/
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edit_uri: ""
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theme:
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name: material
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custom_dir: mkdocs-overrides
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font:
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text: Roboto
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code: Roboto Mono
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palette:
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scheme: default
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primary: blue grey
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accent: indigo
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logo: assets/ms_icon.png
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favicon: assets/ms_icon.png
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features:
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- navigation.instant
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- navigation.indexes
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extra:
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version:
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provider: mike
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default: latest
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plugins:
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- search
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markdown_extensions:
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- pymdownx.superfences:
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custom_fences:
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- name: mermaid
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class: mermaid
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format: !!python/name:pymdownx.superfences.fence_code_format
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- meta
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- admonition
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- pymdownx.highlight
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- pymdownx.pathconverter
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- mdx_truly_sane_lists
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nav:
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- Overview: # Pages to explain what the Azure TRE
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- Introducing the AzureTRE: index.md # Introduction to the concept of a TRE, and the AzureTRE
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- User Roles: azure-tre-overview/user-roles.md # The users and roles within an Azure TRE
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- Architecture: # Pages to help understand the components, infra, and networking
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- System Architecture: azure-tre-overview/architecture.md
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- Network Architecture: azure-tre-overview/networking.md
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- Azure Resources: azure-tre-overview/tre-resources-breakdown.md
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- Airlock: azure-tre-overview/airlock.md
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- Cost Reporting: azure-tre-overview/cost-reporting.md
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- Terms and Definitions: using-tre/terms-definitions.md
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# - Compliance: azure-tre-overview/compliance-info.md
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- QuickStart: # Setup steps for anyone performing an initial deployment of the AzureTRE for eval purposes
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- tre-admins/setup-instructions/index.md
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- 1. Prerequisites: tre-admins/setup-instructions/prerequisites.md
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- 2. Deployment Repository: tre-admins/setup-instructions/deployment-repo.md
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- 3. AD Tenant: tre-admins/setup-instructions/ad-tenant-choices.md
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- 4. Setup Auth: tre-admins/setup-instructions/setup-auth-entities.md
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- 5. Deployment:
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- Manual:
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- Pre-deployment Steps: tre-admins/setup-instructions/manual-pre-deployment-steps.md
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- Deployment Steps: tre-admins/setup-instructions/manual-deployment.md
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- CI/CD:
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- Pre-deployment Steps: tre-admins/setup-instructions/cicd-pre-deployment-steps.md
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- Deployment Steps: tre-admins/setup-instructions/cicd-deployment.md
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- 6. Configure Shared Services: tre-admins/setup-instructions/configuring-shared-services.md
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- 7. Install Base Workspace: tre-admins/setup-instructions/ui-install-base-workspace.md
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- 8. Install Workspace Service and User Resource: tre-admins/setup-instructions/ui-install-ws-and-ur.md
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- Using the Azure TRE: # Documentation for users of the TRE
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- Introduction: using-tre/index.md
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- Custom Templates: using-tre/templates/index.md
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- Using AzureTRE for Research:
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- Introduction: using-tre/tre-for-research/index.md
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- Set up of a Virtual Machine: using-tre/tre-for-research/using-vms.md
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- Importing/exporting data with Airlock: using-tre/tre-for-research/importing-exporting-data-airlock.md
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- Reviewing Airlock Requests: using-tre/tre-for-research/review-airlock-request.md
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- Templates and Services: # Docs to highlight and illustrate workspaces, workspace services etc
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- Workspaces:
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- Base: tre-templates/workspaces/base.md
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- Unrestricted: tre-templates/workspaces/unrestricted.md
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- Airlock Import Review: tre-templates/workspaces/airlock-import-review.md
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- Workspace Services:
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- Azure ML: tre-templates/workspace-services/azure-ml.md
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- Gitea: tre-templates/workspace-services/gitea.md
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- Guacamole: tre-templates/workspace-services/guacamole.md
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- InnerEye: tre-templates/workspace-services/inner-eye.md
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- MLFlow: tre-templates/workspace-services/mlflow.md
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- Health Services: tre-templates/workspace-services/health_services.md
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- Azure Databricks: tre-templates/workspace-services/databricks.md
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- OHDSI: tre-templates/workspace-services/ohdsi.md
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- Shared Services:
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- Gitea (Source Mirror): tre-templates/shared-services/gitea.md
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- Nexus (Package Mirror): tre-templates/shared-services/nexus.md
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- Azure CycleCloud (HPC Compute): tre-templates/shared-services/cyclecloud.md
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- Airlock Notifier: tre-templates/shared-services/airlock-notifier.md
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- User Resources:
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- Guacamole Windows VM: tre-templates/user-resources/guacamole-windows-vm.md
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- Guacamole Linux VM: tre-templates/user-resources/guacamole-linux-vm.md
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- Import Review VM: tre-templates/user-resources/import-reviewvm.md
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- Export Review VM: tre-templates/user-resources/export-reviewvm.md
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- Technical Guide: # All Technical Documentation (Admin, Development)
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- Administration: # Docs related to the deployment and operation of AzureTRE infrastructure
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- Starting and Stopping Azure TRE Services: tre-admins/start-stop.md
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- Environment Variables: tre-admins/environment-variables.md
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- Tear-down: tre-admins/tear-down.md
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- Authentication and Authorization:
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- Introduction: tre-admins/auth.md
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- Manual Setup: tre-admins/identities/auth-manual.md
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- Identities:
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- Application Admin: tre-admins/identities/application_admin.md
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- API: tre-admins/identities/api.md
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- Client: tre-admins/identities/client.md
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- Automation Test Account: tre-admins/identities/test-account.md
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- Workspaces: tre-admins/identities/workspace.md
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- Registering Templates: tre-admins/registering-templates.md
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- Install Resources via API:
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- Install Base Workspace: tre-admins/setup-instructions/installing-base-workspace.md
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# yamllint disable-line rule:line-length
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- Install Workspace Service and User Resource: tre-admins/setup-instructions/installing-workspace-service-and-user-resource.md
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- Upgrading AzureTRE Version: tre-admins/upgrading-tre.md
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- Upgrading Resources Version: tre-admins/upgrading-resources.md
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- Configuring Airlock Reviews: tre-admins/configure-airlock-review.md
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- Supported Clouds: tre-admins/supported-clouds.md
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- Development: # Docs related to the developing code for the AzureTRE
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- Local Development: using-tre/local-development/local-development.md
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- Contributing to AzureTRE: # Docs aimed at OSS developers, committing code to the AzureTRE repo
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- Introduction: tre-developers/index.md
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- API: tre-developers/api.md
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- UI: tre-developers/ui.md
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- Resource Processor: tre-developers/resource-processor.md
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- End to End Tests: tre-developers/end-to-end-tests.md
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- Letsencrypt: tre-developers/letsencrypt.md
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- Releases: tre-developers/release.md
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- GitHub Actions: tre-admins/setup-instructions/workflows.md
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- Developing Workspace Templates: # Docs aimed at developers creating workspace templates
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- Authoring Workspace Templates: tre-workspace-authors/authoring-workspace-templates.md
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- Firewall Rules: tre-workspace-authors/firewall-rules.md
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- Pipeline Templates:
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- Overview: tre-templates/pipeline-templates/overview.md
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- Pipeline Schema: tre-templates/pipeline-templates/pipeline-schema.md
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- AzureTRE CLI: tre-developers/CLI.md
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- Troubleshooting FAQ: # General Troubleshooting Section for Development
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- troubleshooting-faq/index.md
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- Enabling DEBUG logs: troubleshooting-faq/debug-logs.md
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- API logs using deployment center: troubleshooting-faq/api-logs-deployment-center.md
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- Checking the Service Bus: troubleshooting-faq/troubleshooting-sb.md
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- Checking Logs in Application Insights: troubleshooting-faq/app-insights-logs.md
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- Troubleshooting the Resource Processor: troubleshooting-faq/troubleshooting-rp.md
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- Troubleshooting the Airlock: troubleshooting-faq/airlock-troubleshooting.md
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- Manually edit resources in Cosmos DB: troubleshooting-faq/manually-editing-resources.md
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- Troubleshooting cloud-init: troubleshooting-faq/cloud-init.md
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- Contributing: contributing.md
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