update python h5py to fix build break caused by recent to HDF5 update (#9223)

SPECS/keras/keras.spec

@@ -3,7 +3,7 @@
 Summary:        Keras is a high-level neural networks API.
 Name:           keras
 Version:        2.11.0
-Release:        2%{?dist}
+Release:        3%{?dist}
 License:        ASL 2.0
 Vendor:         Microsoft Corporation
 Distribution:   Mariner
@@ -25,6 +25,7 @@ BuildRequires:  python3-wheel
 BuildRequires:  tar
 BuildRequires:  which
 BuildRequires:  python3-tf-nightly = 2.11.0
+BuildRequires:  python3-h5py
 ExclusiveArch:  x86_64
 
 %description
@@ -69,6 +70,9 @@ bazel --batch build  --verbose_explanations //keras/tools/pip_package:build_pip_
 
 
 %changelog
+* Fri May 24 2024 Riken Maharjan <rmaharjan@microsoft.com> - 2.11.0-3
+- Explicitly BR python3-h5py.
+
 * Tue Aug 01 2023 Riken Maharjan <rmaharjan@microsoft.com> - 2.11.0-2
 - Remove bazel version.
 

SPECS/python-h5py/h5py-3.7.0-ppc-float128.patch

@@ -1,23 +0,0 @@
-diff -up h5py-3.7.0/h5py/h5t.pyx.orig h5py-3.7.0/h5py/h5t.pyx
---- h5py-3.7.0/h5py/h5t.pyx.orig	2022-06-14 16:31:22.964458579 +0000
-+++ h5py-3.7.0/h5py/h5t.pyx	2022-06-14 16:31:46.404768118 +0000
-@@ -282,18 +282,7 @@ cdef (int, int, int) _correct_float_info
-     nmant = finfo.nmant
-     maxexp = finfo.maxexp
-     minexp = finfo.minexp
--    # workaround for numpy's buggy finfo on float128 on ppc64 archs
--    if ftype_ == np.longdouble and MACHINE == 'ppc64':
--        # values reported by hdf5
--        nmant = 116
--        maxexp = 1024
--        minexp = -1022
--    elif ftype_ == np.longdouble and MACHINE == 'ppc64le':
--        # values reported by hdf5
--        nmant = 52
--        maxexp = 1024
--        minexp = -1022
--    elif nmant == 63 and finfo.nexp == 15:
-+    if nmant == 63 and finfo.nexp == 15:
-         # This is an 80-bit float, correct mantissa size
-         nmant += 1
- 

SPECS/python-h5py/python-h5py.signatures.json

@@ -1,5 +1,5 @@
 {
  "Signatures": {
-  "h5py-3.7.0.tar.gz": "3fcf37884383c5da64846ab510190720027dca0768def34dd8dcb659dbe5cbf3"
+  "h5py-3.10.0.tar.gz": "d93adc48ceeb33347eb24a634fb787efc7ae4644e6ea4ba733d099605045c049"
  }
-}
+}

SPECS/python-h5py/python-h5py.spec

@@ -12,17 +12,14 @@ data types and data structures and their HDF5 equivalents vastly\
 simplifies the process of reading and writing data from Python.
 Summary:        A Python interface to the HDF5 library
 Name:           h5py
-Version:        3.7.0
-Release:        5%{?dist}
+Version:        3.10.0
+Release:        1%{?dist}
 License:        BSD
 Vendor:         Microsoft Corporation
 Distribution:   Mariner
 URL:            https://www.h5py.org/
 Source0:        https://files.pythonhosted.org/packages/source/h/h5py/h5py-%{version}.tar.gz
-# drop the unnecessary workaround for float128 type after
-# https://fedoraproject.org/wiki/Changes/PPC64LE_Float128_Transition
-# in F-36
-Patch0:         h5py-3.7.0-ppc-float128.patch
+
 BuildRequires:  gcc
 BuildRequires:  hdf5-devel >= 1.14.4
 BuildRequires:  liblzf-devel
@@ -50,7 +47,7 @@ Requires:       python%{python3_pkgversion}-six
 
 %prep
 %setup -q -c -n %{name}-%{version}
-%patch0
+
 mv %{name}-%{version} serial
 cd serial
 %{__python3} api_gen.py
@@ -69,7 +66,11 @@ export H5PY_SYSTEM_LZF=1
 export CFLAGS="%{optflags} -fopenmp"
 cd serial
 %py3_build
+cd -
 
+# MPI
+export CC=mpicc
+export HDF5_MPI="ON"
 
 %install
 # Upstream requires a specific numpy without this
@@ -92,6 +93,9 @@ cd -
 %{python3_sitearch}/%{name}-%{version}-*.egg-info
 
 %changelog
+* Thu May 23 2024 Riken Maharjan <rmaharjan@microsoft.com> - 3.10.0-1
+- Update to 3.10.0 to match hdf5 1.14.4
+
 * Mon May 20 2024 George Mileka <gmileka@microsoft.com> - 3.7.0-5
 - Bumping the release version so that this package is re-built with the newer
   1.14.4 hdf5 libraries. This ensures that the matching 1.14.4 .so files Will

SPECS/python-tensorflow-estimator/python-tensorflow-estimator.spec

@@ -7,7 +7,7 @@ A high-level TensorFlow API that greatly simplifies machine learning programming
 Summary:        A high-level TensorFlow API that greatly simplifies machine learning programming
 Name:           python-%{pypi_name}
 Version:        2.11.0
-Release:        1%{?dist}
+Release:        2%{?dist}
 License:        ASL 2.0
 Vendor:         Microsoft Corporation
 Distribution:   Mariner
@@ -21,6 +21,7 @@ BuildRequires:  python3-wheel
 BuildRequires:  python3-six
 BuildRequires:  python3-tf-nightly
 BuildRequires:  python3-keras
+BuildRequires:  python3-h5py
 ExclusiveArch:  x86_64
 
 
@@ -61,6 +62,9 @@ bazel --batch build //tensorflow_estimator/tools/pip_package:build_pip_package
 %{python3_sitelib}/*
 
 %changelog
+* Fri May 24 2024 Riken Maharjan <rmaharjan@microsoft.com> - 2.11.0-2
+- Explicitly BR python3-h5py.
+
 * Fri Nov 11 2022 Riken Maharjan <rmaharjan@microsoft.com> - 2.11.0-1
 - Original version for CBL-Mariner. License Verified.
 

cgmanifest.json

@@ -5130,8 +5130,8 @@
         "type": "other",
         "other": {
           "name": "h5py",
-          "version": "3.7.0",
-          "downloadUrl": "https://files.pythonhosted.org/packages/source/h/h5py/h5py-3.7.0.tar.gz"
+          "version": "3.10.0",
+          "downloadUrl": "https://files.pythonhosted.org/packages/source/h/h5py/h5py-3.10.0.tar.gz"
         }
       }
     },