Name build environment so it can be shared

Remove old scripts
Update app name

api_service/docker_scripts/pip.conf

@@ -1,3 +1,3 @@
 [global]
-index-url = https://packages.idmod.org/api/pypi/idm-pypi-production/simple
+index-url = https://packages.idmod.org/api/pypi/pypi-production/simple
 trusted-host = packages.idmod.org

api_service/docker_scripts/setup_env.R

@@ -1,58 +0,0 @@
-# This script is meant to be ran before the model. it manages out dependencies for
-# our flu model R scripts
-
-# load packages that are available in CRAN
-cranPkgLoad <- function( packages = "favourites" ) {
-
-    if( length( packages ) == 1L && packages == "favourites" ) {
-        packages <- c(
-            "optparse"
-        )
-    }
-
-    # we should probably change this to devtools::install_version and parse a requirement.txt file
-    # this will make it easier to maintain our R packages in both docker and dev environments
-    packagecheck <- match( packages, utils::installed.packages()[,1] )
-
-    packagestoinstall <- packages[ is.na( packagecheck ) ]
-
-    if( length( packagestoinstall ) > 0L ) {
-        utils::install.packages( packagestoinstall, repos = "http://cran.csiro.au" )
-    } else {
-        print( "All cran requested packages already installed" )
-    }
-
-    for( package in packages ) {
-        suppressPackageStartupMessages(
-            library( package, character.only = TRUE, quietly = TRUE )
-        )
-    }
-
-}
-
-
-
-
-# Later, replace this with reading the packages from a file so we can control them
-# similar to python's setup.py or requirement.txt
-
-
-cranPkgLoad(
-    c(
-    "optparse",
-    "jsonlite",
-    "magrittr",
-    "dplyr",
-    "tidyr"
-    )
-)
-
-# install all avaiable models
-setwd("./models")
-pkgs <- list.files(path='./')
-print(pkgs)
-sapply(pkgs, function(x) {
-    paste("file://", x, sep="")
-})
-print(pkgs)
-install.packages(c(print(as.character(pkgs), collapse="\",\"")), dependencies=TRUE)

api_service/docker_scripts/wsgi.ini

@@ -1,5 +1,5 @@
 [uwsgi]
-module = seattle_flu.app:application
+module = seattle_flu_incidence_mapper.app:application
 master = true
 # Set the processes to total CPU count
 processes = %k

api_service/wsgi.ini

@@ -1,13 +0,0 @@
-[uwsgi]
-module = seattle_flu_incidence_mapper.server:app
-master = true
-# Set the processes to total CPU count
-processes = %k
-threads = 1
-chdir = /app
-socket = service.sock
-chmod-socket = 666
-vacuum = true
-die-on-term = true
-reload-on-rss = 2048
-buffer-size = 32768

docker-compose.rstudio.yml

@@ -37,7 +37,7 @@ services:
         #  - "HTTP_PROXY=${HTTP_PROXY:-}"
         #  - "HTTPS_PROXY=${HTTPS_PROXY:-}"
         #  - "FTP_PROXY=${FTP_PROXY:-}"
-      image: seattleflu_rmodeldev
+      image: idm-docker-staging.packages.idmod.org/sfim_build_env:latest
       environment:
         - "DISABLE_AUTH=true"
         - "USERID=${UID:-1000}"