Add a generic Makefile to generate all types of documents.

Makefile

@@ -0,0 +1,68 @@
+BASE := $(dir $(lastword $(MAKEFILE_LIST)))
+
+RMD=$(wildcard *_*.Rmd)
+
+RCD=$(RMD:.Rmd=.R)
+HTM=$(RMD:.Rmd=.html)
+PDF=$(RMD:.Rmd=.pdf)
+ODT=$(RMD:.Rmd=.odt)
+DOC=$(RMD:.Rmd=.docx)
+MDN=$(RMD:.Rmd=.md)
+IPY=$(RMD:.Rmd=.ipynb)
+
+site: $(RCD) $(PDF) $(HTM) $(DOC) $(ODT) $(MDN) $(IPY)
+	Rscript -e 'rmarkdown::render_site("index.Rmd")'
+
+site.view: site
+	firefox _site/index.html &
+
+book.pdf: *.Rmd
+	Rscript -e 'bookdown::render_book("index.Rmd", output_format="bookdown::pdf_book")'
+	mv _book/_main.pdf $@
+	rmdir _book
+
+book.html: *.Rmd
+	Rscript -e 'bookdown::render_book("index.Rmd", output_format="bookdown::gitbook")'
+	mv _book _html
+
+%.R: %.Rmd
+	Rscript -e 'knitr::purl("$*.Rmd")'
+
+%.md: %.Rmd
+	Rscript -e 'rmarkdown::render("$*.Rmd", "rmarkdown::md_document")'
+
+%.html: %.Rmd
+	Rscript -e 'rmarkdown::render("$*.Rmd", "rmarkdown::html_document")'
+
+%.pdf: %.Rmd
+	Rscript -e 'rmarkdown::render("$*.Rmd", "rmarkdown::pdf_document")'
+
+%.view: %.pdf
+	evince $^
+
+%.ipynb: %.Rmd
+	notedown $^ --nomagic > $@
+	sh $(BASE)fix_ipynb.sh $@
+
+%.docx: %.Rmd
+	Rscript -e 'rmarkdown::render("$*.Rmd", "rmarkdown::word_document")'
+
+%.odt: %.Rmd
+	Rscript -e 'rmarkdown::render("$*.Rmd", "rmarkdown::odt_document")'
+
+install: realclean site
+	sudo rsync -avzh _site/ /var/www/html/resources/
+	sudo chmod -R go+rX /var/www/html/resources/
+	rsync -avzh _site/*.ipynb adsapldsvm:notebooks/dsr/
+	firefox /var/www/html/resources/index.html &
+
+clean:
+	rm -f *.docx *.R *.odt *.pdf *.html *.md *.ipynb
+
+realclean: clean
+	rm -f *~
+	rm -rf _book _site _html data models
+	rm -rf app_education_files
+
+wwwclean:
+	sudo rm -rf /var/www/html/resources/*

fix_ipynb.sh

@@ -0,0 +1,25 @@
+#!/bin/sh
+#
+# Author: Graham Williams
+# Date: 20170111
+#
+# This is not done by notedown but it is what is on the end of a
+# sample notebook so add it here and the document kernel is recognised
+# as R.
+
+perl -pi -e 's|"metadata": \{\},| "metadata": {\
+  "anaconda-cloud": {},\
+  "kernelspec": {\
+   "display_name": "R",\
+   "language": "R",\
+   "name": "ir"\
+  },\
+  "language_info": {\
+   "codemirror_mode": "r",\
+   "file_extension": ".r",\
+   "mimetype": "text/x-r-source",\
+   "name": "R",\
+   "pygments_lexer": "r",\
+   "version": "3.2.2"\
+  }\
+ },|' $1