include build/ before other dirs so old proto built files in src/ and

include/ don't interfere

Makefile

@@ -112,8 +112,8 @@ CUDA_LIB_DIR := $(CUDA_DIR)/lib64 $(CUDA_DIR)/lib
 MKL_INCLUDE_DIR := $(MKL_DIR)/include
 MKL_LIB_DIR := $(MKL_DIR)/lib $(MKL_DIR)/lib/intel64
 
-INCLUDE_DIRS += ./src ./include $(CUDA_INCLUDE_DIR)
 INCLUDE_DIRS += $(BUILD_INCLUDE_DIR)
+INCLUDE_DIRS += ./src ./include $(CUDA_INCLUDE_DIR)
 LIBRARY_DIRS += $(CUDA_LIB_DIR)
 LIBRARIES := cudart cublas curand \
 	pthread \