#include // for snprintf #include #include #include "boost/algorithm/string.hpp" #include "google/protobuf/text_format.h" #include "caffe/blob.hpp" #include "caffe/common.hpp" #include "caffe/net.hpp" #include "caffe/proto/caffe.pb.h" #include "caffe/util/db.hpp" #include "caffe/util/io.hpp" #include "caffe/vision_layers.hpp" using caffe::Blob; using caffe::Caffe; using caffe::Datum; using caffe::Net; using boost::shared_ptr; using std::string; namespace db = caffe::db; template int feature_extraction_pipeline(int argc, char** argv); int main(int argc, char** argv) { return feature_extraction_pipeline(argc, argv); // return feature_extraction_pipeline(argc, argv); } template int feature_extraction_pipeline(int argc, char** argv) { ::google::InitGoogleLogging(argv[0]); const int num_required_args = 7; if (argc < num_required_args) { LOG(ERROR)<< "This program takes in a trained network and an input data layer, and then" " extract features of the input data produced by the net.\n" "Usage: extract_features pretrained_net_param" " feature_extraction_proto_file extract_feature_blob_name1[,name2,...]" " save_feature_dataset_name1[,name2,...] num_mini_batches db_type" " [CPU/GPU] [DEVICE_ID=0]\n" "Note: you can extract multiple features in one pass by specifying" " multiple feature blob names and dataset names seperated by ','." " The names cannot contain white space characters and the number of blobs" " and datasets must be equal."; return 1; } int arg_pos = num_required_args; arg_pos = num_required_args; if (argc > arg_pos && strcmp(argv[arg_pos], "GPU") == 0) { LOG(ERROR)<< "Using GPU"; uint device_id = 0; if (argc > arg_pos + 1) { device_id = atoi(argv[arg_pos + 1]); CHECK_GE(device_id, 0); } LOG(ERROR) << "Using Device_id=" << device_id; Caffe::SetDevice(device_id); Caffe::set_mode(Caffe::GPU); } else { LOG(ERROR) << "Using CPU"; Caffe::set_mode(Caffe::CPU); } arg_pos = 0; // the name of the executable std::string pretrained_binary_proto(argv[++arg_pos]); // Expected prototxt contains at least one data layer such as // the layer data_layer_name and one feature blob such as the // fc7 top blob to extract features. /* layers { name: "data_layer_name" type: DATA data_param { source: "/path/to/your/images/to/extract/feature/images_leveldb" mean_file: "/path/to/your/image_mean.binaryproto" batch_size: 128 crop_size: 227 mirror: false } top: "data_blob_name" top: "label_blob_name" } layers { name: "drop7" type: DROPOUT dropout_param { dropout_ratio: 0.5 } bottom: "fc7" top: "fc7" } */ std::string feature_extraction_proto(argv[++arg_pos]); shared_ptr > feature_extraction_net( new Net(feature_extraction_proto, caffe::TEST)); feature_extraction_net->CopyTrainedLayersFrom(pretrained_binary_proto); std::string extract_feature_blob_names(argv[++arg_pos]); std::vector blob_names; boost::split(blob_names, extract_feature_blob_names, boost::is_any_of(",")); std::string save_feature_dataset_names(argv[++arg_pos]); std::vector dataset_names; boost::split(dataset_names, save_feature_dataset_names, boost::is_any_of(",")); CHECK_EQ(blob_names.size(), dataset_names.size()) << " the number of blob names and dataset names must be equal"; size_t num_features = blob_names.size(); for (size_t i = 0; i < num_features; i++) { CHECK(feature_extraction_net->has_blob(blob_names[i])) << "Unknown feature blob name " << blob_names[i] << " in the network " << feature_extraction_proto; } int num_mini_batches = atoi(argv[++arg_pos]); std::vector > feature_dbs; std::vector > txns; for (size_t i = 0; i < num_features; ++i) { LOG(INFO)<< "Opening dataset " << dataset_names[i]; shared_ptr db(db::GetDB(argv[++arg_pos])); db->Open(dataset_names.at(i), db::NEW); feature_dbs.push_back(db); shared_ptr txn(db->NewTransaction()); txns.push_back(txn); } LOG(ERROR)<< "Extacting Features"; Datum datum; const int kMaxKeyStrLength = 100; char key_str[kMaxKeyStrLength]; std::vector*> input_vec; std::vector image_indices(num_features, 0); for (int batch_index = 0; batch_index < num_mini_batches; ++batch_index) { feature_extraction_net->Forward(input_vec); for (int i = 0; i < num_features; ++i) { const shared_ptr > feature_blob = feature_extraction_net ->blob_by_name(blob_names[i]); int batch_size = feature_blob->num(); int dim_features = feature_blob->count() / batch_size; const Dtype* feature_blob_data; for (int n = 0; n < batch_size; ++n) { datum.set_height(dim_features); datum.set_width(1); datum.set_channels(1); datum.clear_data(); datum.clear_float_data(); feature_blob_data = feature_blob->cpu_data() + feature_blob->offset(n); for (int d = 0; d < dim_features; ++d) { datum.add_float_data(feature_blob_data[d]); } int length = snprintf(key_str, kMaxKeyStrLength, "%d", image_indices[i]); string out; CHECK(datum.SerializeToString(&out)); txns.at(i)->Put(std::string(key_str, length), out); ++image_indices[i]; if (image_indices[i] % 1000 == 0) { txns.at(i)->Commit(); txns.at(i).reset(feature_dbs.at(i)->NewTransaction()); LOG(ERROR)<< "Extracted features of " << image_indices[i] << " query images for feature blob " << blob_names[i]; } } // for (int n = 0; n < batch_size; ++n) } // for (int i = 0; i < num_features; ++i) } // for (int batch_index = 0; batch_index < num_mini_batches; ++batch_index) // write the last batch for (int i = 0; i < num_features; ++i) { if (image_indices[i] % 1000 != 0) { txns.at(i)->Commit(); } LOG(ERROR)<< "Extracted features of " << image_indices[i] << " query images for feature blob " << blob_names[i]; feature_dbs.at(i)->Close(); } LOG(ERROR)<< "Successfully extracted the features!"; return 0; }