Remove Sphinx-Multiversion and fix docs generation (#754)

- Remove sphinx-multiversion, which was having issues scaling and was not usable as a CI tool.
- Clone the existing docs into ./dowhy-docs to cache existing builds.
- Remove config-swaps, establish fixed documentation config.
- Add a GitHub Action to build the docs (and not deploy them) during CI on PRs.
- Add a GitHub Action to build the docs when releases are cut using the new release tag.

Signed-off-by: Chris Trevino <darthtrevino@gmail.com>
Signed-off-by: Peter Goetz <pego@amazon.com>

.github/workflows/advanced-on-demand.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       matrix:
         python-version: [3.8, 3.9]
-        poetry-version: [1.2.1]
+        poetry-version: [1.2.2]
         test-group: [1, 2, 3, 4]
 
     if: ${{ github.event.comment.body == 'test advanced'}}

.github/workflows/ci.yml

@@ -28,11 +28,11 @@ jobs:
     strategy:
       matrix:
         python-version: [3.8, 3.9]
-        poetry-version: [1.2.1]
+        poetry-version: [1.2.2]
         test-group: [1, 2, 3, 4, 5, 6]
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
 
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v2

.github/workflows/docs-ci.yml

@@ -0,0 +1,29 @@
+name: Build Docs (CI)
+
+on:
+  pull_request:
+    branches: [main]
+    paths:
+      - ".github/workflows/docs-ci.yml"
+      - "dowhy/**"
+      - "docs/**"
+      - "pyproject.toml"
+      - "poetry.lock"
+
+jobs:
+  docs:
+    runs-on: ubuntu-latest
+    container:
+      image: "ghcr.io/${{ github.repository_owner }}/dowhy-docs-generation:latest"
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      - name: Install Python Dependencies
+        run: poetry install -E plotting -E causalml -E econml -E pydot --with docs
+
+      - run: git config --global --add safe.directory /__w/dowhy/dowhy
+
+      - name: Build
+        run: ./docs/generate_docs.sh

.github/workflows/docs-on-demand.yml

@@ -1,78 +0,0 @@
-name: Build Docs (on demand)
-
-on:
-  issue_comment:
-    types: [created, edited]
-
-jobs:
-  docs:
-    runs-on: ubuntu-latest
-    container:
-      image: "ghcr.io/${{ github.repository_owner }}/dowhy-docs-generation:latest"
-
-    if: ${{ github.event.comment.body == 'build docs'}}
-    steps:
-      - name: Message Initiating
-        uses: actions/github-script@v4
-        with:
-          script: |
-            github.issues.createComment({
-              issue_number: context.issue.number,
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              body: 'Launching documentation build 🚀',
-            });          
-
-      - name: Get PR SHA
-        id: sha
-        uses: actions/github-script@v4
-        with:
-          result-encoding: string
-          script: |
-            const { owner, repo, number } = context.issue;
-            const pr = await github.pulls.get({
-              owner,
-              repo,
-              pull_number: number,
-            });
-            return pr.data.head.sha   
-
-      - uses: actions/checkout@v2
-        with:
-          ref: ${{ steps.sha.outputs.result }}
-          fetch-depth: 0
-
-      - name: Install Python Dependencies
-        run: poetry install -E plotting -E causalml -E econml -E pydot --with docs
-
-      - name: Build
-        run: |
-          # sphinx-multiversion invokes git internally. Its call to "git rev-parse --show-toplevel" throws the
-          # following error: "fatal: detected dubious ownership in repository at '/__w/dowhy/dowhy'"
-          # The following command avoids this.
-          git config --global --add safe.directory /__w/dowhy/dowhy
-          ./docs/generate_docs.sh
-
-      - name: Message success
-        if: ${{ success() }}
-        uses: actions/github-script@v4
-        with:
-          script: |
-            github.issues.createComment({
-              issue_number: context.issue.number,
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              body: 'Documentation build succeeded! ✅',
-            });
-
-      - name: Message failure
-        if: ${{ failure() }}
-        uses: actions/github-script@v4
-        with:
-          script: |
-            github.issues.createComment({
-              issue_number: context.issue.number,
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              body: 'Documentation build failed! ❌',
-            });

.github/workflows/docs-release.yml

@@ -0,0 +1,31 @@
+name: Build & Deploy Docs (For Release)
+
+on:
+  release:
+    types: [created]
+
+jobs:
+  docs:
+    runs-on: ubuntu-latest
+    container:
+      image: "ghcr.io/${{ github.repository_owner }}/dowhy-docs-generation:latest"
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      - name: Install Python Dependencies  
+        run: poetry install -E plotting -E causalml -E econml -E pydot --with docs
+
+      - run: git config --global --add safe.directory /__w/dowhy/dowhy
+
+      - name: Build
+        run: ./docs/generate_docs.sh
+        env:
+          DOCS_VERSION: ${{ github.event.release.tag_name }}
+          
+      - name: Commit and push to gh-pages branch
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./dowhy-docs

.github/workflows/docs.yml

@@ -1,8 +1,14 @@
-name: Build Docs
+name: Build & Deploy Docs
 on:
   push:
     branches:
       - main
+    paths:
+      - ".github/workflows/docs.yml"
+      - "dowhy/**"
+      - "docs/**"
+      - "pyproject.toml"
+      - "poetry.lock"
   workflow_run:
     workflows: [ "Build Docker image (docs)" ]
     types:
@@ -14,20 +20,17 @@ jobs:
     container:
       image: "ghcr.io/${{ github.repository_owner }}/dowhy-docs-generation:latest"
     steps:
-      - uses: actions/checkout@main
+      - uses: actions/checkout@v3
         with:
-          fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
+          fetch-depth: 0
 
       - name: Install Python Dependencies  
         run: poetry install -E plotting -E causalml -E econml -E pydot --with docs
 
+      - run: git config --global --add safe.directory /__w/dowhy/dowhy
+
       - name: Build
-        run: |
-          # sphinx-multiversion invokes git internally. Its call to "git rev-parse --show-toplevel" throws the
-          # following error: "fatal: detected dubious ownership in repository at '/__w/dowhy/dowhy'"
-          # The following command avoids this.
-          git config --global --add safe.directory /__w/dowhy/dowhy
-          ./docs/generate_docs.sh
+        run: ./docs/generate_docs.sh
           
       - name: Commit and push to gh-pages branch
         uses: peaceiris/actions-gh-pages@v3

.github/workflows/nightly-tests.yml

@@ -12,7 +12,7 @@ jobs:
     strategy:
       matrix:
         python-version: [3.8, 3.9]
-        poetry-version: [1.2.1]
+        poetry-version: [1.2.2]
 
     steps:
       - uses: actions/checkout@v2

.github/workflows/python-publish.yml

@@ -20,10 +20,10 @@ jobs:
       with:
         python-version: '3.8'
     
-    - name: Install Poetry 1.2.1
+    - name: Install Poetry 1.2.2
       uses: abatilo/actions-poetry@v2.0.0
       with:
-        poetry-version: '1.2.1'
+        poetry-version: '1.2.2'
 
     - name: Install Poetry Dynamic Versioning Plugin
       run: pip install poetry-dynamic-versioning

.gitignore

@@ -107,6 +107,5 @@ venv.bak/
 # custom values
 docs/source/example_notebooks/*.png
 docs/source/example_notebooks/lalonde.csv
-docs/source/_templates/versions.html
 docs/source/example_notebooks/lalonde.csv
 dowhy-docs

docs/Dockerfile

@@ -6,5 +6,5 @@ FROM ghcr.io/py-why/dowhy-example-notebooks-deps
 
 RUN apt update
 RUN DEBIAN_FRONTEND=noninteractive apt install --yes --quiet curl
-RUN curl -sSL https://install.python-poetry.org | python3 - --version 1.2.1
+RUN curl -sSL https://install.python-poetry.org | python3 - --version 1.2.2
 ENV PATH=$PATH:/root/.local/share/pypoetry/venv/bin

docs/generate_docs.sh

@@ -1,26 +1,32 @@
-#!/bin/bash -ex
-
+#!/bin/bash -e
 cd $( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
-
-OUTPUT_DIR='../dowhy-docs'
-
-mv source/conf.py source/conf.py.orig
-cp source/conf-rtd.py source/conf.py
-cp source/_templates/versions-rtd.html source/_templates/versions.html
-
-poetry run sphinx-multiversion --dump-metadata source ${OUTPUT_DIR}
-poetry run sphinx-multiversion source ${OUTPUT_DIR}
-
-mv source/conf.py.orig source/conf.py
-cp source/_templates/versions-pydata.html source/_templates/versions.html
-
-poetry run sphinx-multiversion --dump-metadata source ${OUTPUT_DIR}
-poetry run sphinx-multiversion source ${OUTPUT_DIR}
-
+DOCS_ROOT='../dowhy-docs'
+# To change the build target, specify the DOCS_VERSION environment variable. (e.g. DOCS_VERSION=v0.8)
+TARGET_BUILD=${DOCS_VERSION:-main}
+OUTPUT_DIR="${DOCS_ROOT}/${TARGET_BUILD}"
 STABLE_VERSION=$(git describe --tags --abbrev=0 --match='v*')
 
+echo "Building docs for version ${TARGET_BUILD} into ${OUTPUT_DIR}, stable version is ${STABLE_VERSION}"
+
+#
+# Cache existing docs
+#
+if [ ! -f "${DOCS_ROOT}/index.html" ]; then
+    git clone --quiet --branch gh-pages https://github.com/py-why/dowhy.git ${DOCS_ROOT}
+    rm -rf ${DOCS_ROOT}/.git
+fi
+
+#
+# Build docs
+echo "Executing sphinx-build"
+poetry run sphinx-build -j auto source ${OUTPUT_DIR}
+
+#
+# Create the top-level index.html
+#
+
 echo "<html>
     <head>
         <meta http-equiv="'"'"refresh"'"'" content="'"'"0; url=./${STABLE_VERSION}"'"'" />
     </head>
-</html>" > ${OUTPUT_DIR}/index.html
+</html>" > ${DOCS_ROOT}/index.html

docs/source/_templates/versions-rtd.html

@@ -1,27 +0,0 @@
-{%- if current_version %}
-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: {{ current_version.name if current_version.name != "main" else "main-branch" }}
-    <span class="fa fa-caret-down"></span>
-  </span>
-    <div class="rst-other-versions">
-        {%- if versions.tags %}
-        <dl>
-            <dt>Releases</dt>
-            {%- for item in versions.tags %}
-            <dd><a href="{{ item.url }}">{{ item.name }}</a></dd>
-            {%- endfor %}
-            <!-- TODO: add mechanism to add new version here. Probably just render them in from generate_docs.sh. -->
-        </dl>
-        {%- endif %}
-        <dl>
-            <dt>Branches</dt>
-            <!-- hard-coding the link to main -->
-            <!-- It would be nice if this opened the same page on main branch, but that seems to be overkill
-                 right now. Therefore defaulting to the starting page (index). -->
-            <dd><a href="/dowhy/main/index.html">main</a></dd>
-        </dl>
-    </div>
-</div>
-{%- endif %}

docs/source/conf-rtd.py

@@ -1,201 +0,0 @@
-# -*- coding: utf-8 -*-
-#
-# Configuration file for the Sphinx documentation builder.
-#
-# This file does only contain a selection of the most common options. For a
-# full list see the documentation:
-# http://www.sphinx-doc.org/en/stable/config
-
-# -- Path setup --------------------------------------------------------------
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-import os
-import sys
-
-sys.path.insert(0, os.path.abspath("../../"))
-
-# -- Project information -----------------------------------------------------
-
-project = "DoWhy"
-copyright = "2022, PyWhy contributors"
-author = "PyWhy community"
-
-
-# -- General configuration ---------------------------------------------------
-
-# If your documentation needs a minimal Sphinx version, state it here.
-#
-# needs_sphinx = '1.0'
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = [
-    "sphinx.ext.autodoc",
-    "sphinx.ext.viewcode",
-    "sphinx.ext.todo",
-    "nbsphinx",
-    "sphinx_rtd_theme",
-    "sphinx_multiversion",
-    "sphinxcontrib.googleanalytics",
-    "sphinx_copybutton",
-]
-
-googleanalytics_id = "G-B139P18WHM"
-copybutton_prompt_text = ">>> "
-
-autodoc_mock_imports = ["matplotlib", "causalml", "pymc3", "econml"]
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ["_templates"]
-
-# The suffix(es) of source filenames.
-# You can specify multiple suffix as a list of string:
-#
-# source_suffix = ['.rst', '.md']
-source_suffix = ".rst"
-
-# The master toctree document.
-master_doc = "index"
-
-# The language for content autogenerated by Sphinx. Refer to documentation
-# for a list of supported languages.
-#
-# This is also used if you do content translation via gettext catalogs.
-# Usually you set "language" from the command line for these cases.
-language = "en"
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This pattern also affects html_static_path and html_extra_path .
-exclude_patterns = [
-    "_build",
-    "Thumbs.db",
-    ".DS_Store",
-    ".ipynb_checkpoints",
-    "example_notebooks/dowhy_ranking_methods.ipynb",
-    "example_notebooks/dowhy_optimize_backdoor_example.ipynb",  # need to check why str_to_dot fails here
-    "example_notebooks/dowhy_causal_discovery_example.ipynb",  # need to check why str_to_dot fails here
-    "example_notebooks/dowhy_twins_example.ipynb",
-]
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = "sphinx"
-
-
-# -- Options for HTML output -------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-# html_theme = "pydata_sphinx_theme"
-# import sphinx_rtd_theme
-html_theme = "sphinx_rtd_theme"
-# html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
-
-# Theme options are theme-specific and customize the look and feel of a theme
-# further.  For a list of options available for each theme, see the
-# documentation.
-#
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ["_static"]
-
-# Custom sidebar templates, must be a dictionary that maps document names
-# to template names.
-#
-# The default sidebars (for documents that don't match any pattern) are
-# defined by theme itself.  Builtin themes are using these templates by
-# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
-# 'searchbox.html']``.
-#
-# html_sidebars = {}
-
-
-# -- Options for HTMLHelp output ---------------------------------------------
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = "dowhydoc"
-
-
-# -- Options for LaTeX output ------------------------------------------------
-
-latex_elements = {
-    # The paper size ('letterpaper' or 'a4paper').
-    #
-    # 'papersize': 'letterpaper',
-    # The font size ('10pt', '11pt' or '12pt').
-    #
-    # 'pointsize': '10pt',
-    # Additional stuff for the LaTeX preamble.
-    #
-    # 'preamble': '',
-    # Latex figure (float) alignment
-    #
-    # 'figure_align': 'htbp',
-}
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title,
-#  author, documentclass [howto, manual, or own class]).
-latex_documents = [
-    (master_doc, "dowhy.tex", "dowhy Documentation", "Author", "manual"),
-]
-
-
-# -- Options for manual page output ------------------------------------------
-
-# One entry per manual page. List of tuples
-# (source start file, name, description, authors, manual section).
-man_pages = [(master_doc, "dowhy", "dowhy Documentation", [author], 1)]
-
-
-# -- Options for Texinfo output ----------------------------------------------
-
-# Grouping the document tree into Texinfo files. List of tuples
-# (source start file, target name, title, author,
-#  dir menu entry, description, category)
-texinfo_documents = [
-    (master_doc, "dowhy", "dowhy Documentation", author, "dowhy", "One line description of project.", "Miscellaneous"),
-]
-
-
-# -- Options for Epub output -------------------------------------------------
-
-# Bibliographic Dublin Core info.
-epub_title = project
-epub_author = author
-epub_publisher = author
-epub_copyright = copyright
-
-# The unique identifier of the text. This can be a ISBN number
-# or the project homepage.
-#
-# epub_identifier = ''
-
-# A unique identification for the text.
-#
-# epub_uid = ''
-
-# A list of files that should not be packed into the epub file.
-epub_exclude_files = ["search.html"]
-
-
-# -- Extension configuration -------------------------------------------------
-
-# -- Options for todo extension ----------------------------------------------
-
-# If true, `todo` and `todoList` produce output, else they produce nothing.
-todo_include_todos = True
-
-# init docstrings should also be included in class
-autoclass_content = "both"
-
-smv_tag_whitelist = r"^v0\.[0-8](\..*)?$"
-smv_branch_whitelist = None
-smv_released_pattern = r"refs/tags/v.*"

docs/source/conf.py

@@ -39,7 +39,6 @@ extensions = [
     "sphinx.ext.todo",
     "nbsphinx",
     "sphinx_rtd_theme",
-    "sphinx_multiversion",
     "sphinxcontrib.googleanalytics",
     "sphinx_copybutton",
 ]
@@ -193,7 +192,3 @@ todo_include_todos = True
 
 # init docstrings should also be included in class
 autoclass_content = "both"
-
-smv_tag_whitelist = r"^v\d*\.(9|\d{2,})(\..*)?$"
-smv_branch_whitelist = "main"
-smv_released_pattern = r"refs/tags/v.*"

poetry.lock

@@ -450,7 +450,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "exceptiongroup"
-version = "1.0.0"
+version = "1.0.1"
 description = "Backport of PEP 654 (exception groups)"
 category = "dev"
 optional = false
@@ -562,7 +562,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "google-auth"
-version = "2.14.0"
+version = "2.14.1"
 description = "Google Authentication Library"
 category = "dev"
 optional = false
@@ -577,7 +577,7 @@ six = ">=1.9.0"
 [package.extras]
 aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "requests (>=2.20.0,<3.0.0dev)"]
 enterprise-cert = ["cryptography (==36.0.2)", "pyopenssl (==22.0.0)"]
-pyopenssl = ["pyopenssl (>=20.0.0)"]
+pyopenssl = ["cryptography (>=38.0.3)", "pyopenssl (>=20.0.0)"]
 reauth = ["pyu2f (>=0.1.5)"]
 
 [[package]]
@@ -838,7 +838,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "jsonschema"
-version = "4.16.0"
+version = "4.17.0"
 description = "An implementation of JSON Schema validation for Python"
 category = "dev"
 optional = false
@@ -926,8 +926,8 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-server"
-version = "1.21.0"
-description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
+version = "1.23.0"
+description = "=?utf-8?q?The_backend=E2=80=94i=2Ee=2E_core_services=2C_APIs=2C_and_REST_endpoints=E2=80=94to_Jupyter_web_applications=2E?="
 category = "dev"
 optional = false
 python-versions = ">=3.7"
@@ -1059,7 +1059,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "matplotlib"
-version = "3.6.1"
+version = "3.6.2"
 description = "Python plotting package"
 category = "main"
 optional = false
@@ -1155,7 +1155,7 @@ python-versions = "*"
 
 [[package]]
 name = "nbclassic"
-version = "0.4.7"
+version = "0.4.8"
 description = "A web-based notebook environment for interactive computing"
 category = "dev"
 optional = false
@@ -1183,7 +1183,7 @@ traitlets = ">=4.2.1"
 [package.extras]
 docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"]
 json-logging = ["json-logging"]
-test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-tornasync", "requests", "requests-unixsocket", "selenium (==4.1.5)", "testpath"]
+test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-playwright", "pytest-tornasync", "requests", "requests-unixsocket", "testpath"]
 
 [[package]]
 name = "nbclient"
@@ -1279,7 +1279,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "networkx"
-version = "2.8.7"
+version = "2.8.8"
 description = "Python package for creating and manipulating graphs and networks"
 category = "main"
 optional = false
@@ -1287,10 +1287,10 @@ python-versions = ">=3.8"
 
 [package.extras]
 default = ["matplotlib (>=3.4)", "numpy (>=1.19)", "pandas (>=1.3)", "scipy (>=1.8)"]
-developer = ["mypy (>=0.981)", "pre-commit (>=2.20)"]
-doc = ["nb2plots (>=0.6)", "numpydoc (>=1.4)", "pillow (>=9.1)", "pydata-sphinx-theme (>=0.9)", "sphinx (>=5)", "sphinx-gallery (>=0.10)", "texext (>=0.6.6)"]
+developer = ["mypy (>=0.982)", "pre-commit (>=2.20)"]
+doc = ["nb2plots (>=0.6)", "numpydoc (>=1.5)", "pillow (>=9.2)", "pydata-sphinx-theme (>=0.11)", "sphinx (>=5.2)", "sphinx-gallery (>=0.11)", "texext (>=0.6.6)"]
 extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.9)", "sympy (>=1.10)"]
-test = ["codecov (>=2.1)", "pytest (>=7.1)", "pytest-cov (>=3.0)"]
+test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
 [[package]]
 name = "notebook"
@@ -1325,7 +1325,7 @@ test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixs
 
 [[package]]
 name = "notebook-shim"
-version = "0.2.0"
+version = "0.2.2"
 description = "A shim layer for notebook traits and config"
 category = "dev"
 optional = false
@@ -1559,7 +1559,7 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 
 [[package]]
 name = "pip"
-version = "22.3"
+version = "22.3.1"
 description = "The PyPA recommended tool for installing Python packages."
 category = "main"
 optional = true
@@ -1575,15 +1575,15 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "platformdirs"
-version = "2.5.2"
-description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+version = "2.5.3"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx (>=4)", "sphinx-autodoc-typehints (>=1.12)"]
-test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"]
+docs = ["furo (>=2022.9.29)", "proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.4)"]
+test = ["appdirs (==1.4.4)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]
 
 [[package]]
 name = "pluggy"
@@ -1659,7 +1659,7 @@ twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.31"
+version = "3.0.32"
 description = "Library for building powerful interactive command lines in Python"
 category = "dev"
 optional = false
@@ -1678,7 +1678,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "psutil"
-version = "5.9.3"
+version = "5.9.4"
 description = "Cross-platform lib for process and system monitoring in Python."
 category = "dev"
 optional = false
@@ -1880,7 +1880,7 @@ test = ["black (>=21.4b0)", "flake8", "graphviz (>=0.8)", "jupyter (>=1.0.0)", "
 
 [[package]]
 name = "pyrsistent"
-version = "0.19.1"
+version = "0.19.2"
 description = "Persistent/Functional/Immutable data structures"
 category = "dev"
 optional = false
@@ -1978,7 +1978,7 @@ tzdata = {version = "*", markers = "python_version >= \"3.6\""}
 
 [[package]]
 name = "pywin32"
-version = "304"
+version = "305"
 description = "Python for Window Extensions"
 category = "dev"
 optional = false
@@ -2006,7 +2006,7 @@ py = {version = "*", markers = "implementation_name == \"pypy\""}
 
 [[package]]
 name = "qtconsole"
-version = "5.3.2"
+version = "5.4.0"
 description = "Jupyter Qt console"
 category = "dev"
 optional = false
@@ -2028,7 +2028,7 @@ test = ["flaky", "pytest", "pytest-qt"]
 
 [[package]]
 name = "qtpy"
-version = "2.2.1"
+version = "2.3.0"
 description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)."
 category = "dev"
 optional = false
@@ -2155,18 +2155,20 @@ test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "sciki
 
 [[package]]
 name = "seaborn"
-version = "0.12.0"
+version = "0.12.1"
 description = "Statistical data visualization"
 category = "main"
 optional = true
 python-versions = ">=3.7"
 
 [package.dependencies]
-matplotlib = ">=3.1"
+matplotlib = ">=3.1,<3.6.1 || >3.6.1"
 numpy = ">=1.17"
 pandas = ">=0.25"
 
 [package.extras]
+dev = ["flake8", "mypy", "pandas-stubs", "pre-commit", "pytest", "pytest-cov", "pytest-xdist"]
+docs = ["ipykernel", "nbconvert", "numpydoc", "pydata_sphinx_theme (==0.10.0rc2)", "pyyaml", "sphinx-copybutton", "sphinx-design", "sphinx-issues"]
 stats = ["scipy (>=1.3)", "statsmodels (>=0.10)"]
 
 [[package]]
@@ -2184,7 +2186,7 @@ win32 = ["pywin32"]
 
 [[package]]
 name = "setuptools"
-version = "65.5.0"
+version = "65.5.1"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 category = "main"
 optional = false
@@ -2192,7 +2194,7 @@ python-versions = ">=3.7"
 
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
@@ -2345,27 +2347,9 @@ sphinx = ">=1.8"
 code-style = ["pre-commit (==2.12.1)"]
 rtd = ["ipython", "myst-nb", "sphinx", "sphinx-book-theme"]
 
-[[package]]
-name = "sphinx-multiversion"
-version = "0.2.4"
-description = "Add support for multiple versions to sphinx"
-category = "dev"
-optional = false
-python-versions = "*"
-develop = false
-
-[package.dependencies]
-sphinx = ">=2.1"
-
-[package.source]
-type = "git"
-url = "https://github.com/petergtz/sphinx-multiversion.git"
-reference = "override-version-with-refname"
-resolved_reference = "cd3a67e7998c5205e2456e7cb1026bd3b9f36253"
-
 [[package]]
 name = "sphinx-rtd-theme"
-version = "1.1.0"
+version = "1.1.1"
 description = "Read the Docs theme for Sphinx"
 category = "dev"
 optional = false
@@ -2485,7 +2469,7 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"]
 
 [[package]]
 name = "statsmodels"
-version = "0.13.3"
+version = "0.13.5"
 description = "Statistical computations and models for Python"
 category = "main"
 optional = false
@@ -2497,14 +2481,14 @@ packaging = ">=21.3"
 pandas = ">=0.25"
 patsy = ">=0.5.2"
 scipy = [
-    {version = ">=1.3", markers = "(python_version > \"3.7\" or platform_system != \"Windows\" or platform_machine != \"x86\") and python_version < \"3.12\""},
+    {version = ">=1.3", markers = "(python_version > \"3.9\" or platform_system != \"Windows\" or platform_machine != \"x86\") and python_version < \"3.12\""},
     {version = ">=1.3,<1.9", markers = "python_version == \"3.8\" and platform_system == \"Windows\" and platform_machine == \"x86\" or python_version == \"3.9\" and platform_system == \"Windows\" and platform_machine == \"x86\""},
 ]
 
 [package.extras]
 build = ["cython (>=0.29.32)"]
-develop = ["Jinja2", "colorama", "cython (>=0.29.32)", "cython (>=0.29.32,<3.0.0)", "flake8", "isort", "joblib", "matplotlib (>=3)", "oldest-supported-numpy (>=2022.4.18)", "pytest (>=7.0.1,<7.1.0)", "pytest-randomly", "pytest-xdist", "pywinpty", "setuptools_scm[toml] (>=7.0.0,<7.1.0)"]
-docs = ["ipykernel", "jupyter_client", "matplotlib", "nbconvert", "nbformat", "numpydoc", "pandas-datareader", "sphinx"]
+develop = ["Jinja2", "colorama", "cython (>=0.29.32)", "cython (>=0.29.32,<3.0.0)", "flake8", "isort", "joblib", "matplotlib (>=3)", "oldest-supported-numpy (>=2022.4.18)", "pytest (>=7.0.1,<7.1.0)", "pytest-randomly", "pytest-xdist", "pywinpty", "setuptools-scm[toml] (>=7.0.0,<7.1.0)"]
+docs = ["ipykernel", "jupyter-client", "matplotlib", "nbconvert", "nbformat", "numpydoc", "pandas-datareader", "sphinx"]
 
 [[package]]
 name = "sympy"
@@ -2797,7 +2781,7 @@ python-versions = "*"
 
 [[package]]
 name = "websocket-client"
-version = "1.4.1"
+version = "1.4.2"
 description = "WebSocket client for Python with low level API options"
 category = "dev"
 optional = false
@@ -2824,14 +2808,14 @@ watchdog = ["watchdog"]
 
 [[package]]
 name = "wheel"
-version = "0.37.1"
+version = "0.38.3"
 description = "A built-package format for Python"
 category = "main"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+python-versions = ">=3.7"
 
 [package.extras]
-test = ["pytest (>=3.0.0)", "pytest-cov"]
+test = ["pytest (>=3.0.0)"]
 
 [[package]]
 name = "widgetsnbextension"
@@ -2851,7 +2835,7 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "xgboost"
-version = "1.7.0"
+version = "1.7.1"
 description = "XGBoost Python Package"
 category = "main"
 optional = false
@@ -2891,7 +2875,7 @@ pygraphviz = ["pygraphviz"]
 [metadata]
 lock-version = "1.1"
 python-versions = ">=3.8,<3.10"
-content-hash = "65377d0833479708f8868b4e3f2489f99f318f5451a3a14d5344373ca26612e0"
+content-hash = "50a89406d20f33ba3a343750abd88663e01b6b8af6bd7a65b18808d84f8c5a16"
 
 [metadata.files]
 absl-py = [
@@ -3334,8 +3318,8 @@ entrypoints = [
     {file = "entrypoints-0.4.tar.gz", hash = "sha256:b706eddaa9218a19ebcd67b56818f05bb27589b1ca9e8d797b74affad4ccacd4"},
 ]
 exceptiongroup = [
-    {file = "exceptiongroup-1.0.0-py3-none-any.whl", hash = "sha256:2ac84b496be68464a2da60da518af3785fff8b7ec0d090a581604bc870bdee41"},
-    {file = "exceptiongroup-1.0.0.tar.gz", hash = "sha256:affbabf13fb6e98988c38d9c5650e701569fe3c1de3233cfb61c5f33774690ad"},
+    {file = "exceptiongroup-1.0.1-py3-none-any.whl", hash = "sha256:4d6c0aa6dd825810941c792f53d7b8d71da26f5e5f84f20f9508e8f2d33b140a"},
+    {file = "exceptiongroup-1.0.1.tar.gz", hash = "sha256:73866f7f842ede6cb1daa42c4af078e2035e5f7607f0e2c762cc51bb31bbe7b2"},
 ]
 executing = [
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@@ -3373,8 +3357,8 @@ gast = [
     {file = "gast-0.4.0.tar.gz", hash = "sha256:40feb7b8b8434785585ab224d1568b857edb18297e5a3047f1ba012bc83b42c1"},
 ]
 google-auth = [
-    {file = "google-auth-2.14.0.tar.gz", hash = "sha256:cf24817855d874ede2efd071aa22125445f555de1685b739a9782fcf408c2a3d"},
-    {file = "google_auth-2.14.0-py2.py3-none-any.whl", hash = "sha256:1ad5b0e6eba5f69645971abb3d2c197537d5914070a8c6d30299dfdb07c5c700"},
+    {file = "google-auth-2.14.1.tar.gz", hash = "sha256:ccaa901f31ad5cbb562615eb8b664b3dd0bf5404a67618e642307f00613eda4d"},
+    {file = "google_auth-2.14.1-py2.py3-none-any.whl", hash = "sha256:f5d8701633bebc12e0deea4df8abd8aff31c28b355360597f7f2ee60f2e4d016"},
 ]
 google-auth-oauthlib = [
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@@ -3511,8 +3495,8 @@ joblib = [
     {file = "joblib-1.2.0.tar.gz", hash = "sha256:e1cee4a79e4af22881164f218d4311f60074197fb707e082e803b61f6d137018"},
 ]
 jsonschema = [
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-    {file = "jsonschema-4.16.0.tar.gz", hash = "sha256:165059f076eff6971bae5b742fc029a7b4ef3f9bcf04c14e4776a7605de14b23"},
+    {file = "jsonschema-4.17.0-py3-none-any.whl", hash = "sha256:f660066c3966db7d6daeaea8a75e0b68237a48e51cf49882087757bb59916248"},
+    {file = "jsonschema-4.17.0.tar.gz", hash = "sha256:5bfcf2bca16a087ade17e02b282d34af7ccd749ef76241e7f9bd7c0cb8a9424d"},
 ]
 jupyter = [
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@@ -3532,8 +3516,8 @@ jupyter-core = [
     {file = "jupyter_core-4.11.2.tar.gz", hash = "sha256:c2909b9bc7dca75560a6c5ae78c34fd305ede31cd864da3c0d0bb2ed89aa9337"},
 ]
 jupyter-server = [
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-    {file = "jupyter_server-1.21.0.tar.gz", hash = "sha256:d0adca19913a3763359be7f0b8c2ea8bfde356f4b8edd8e3149d7d0fbfaa248b"},
+    {file = "jupyter_server-1.23.0-py3-none-any.whl", hash = "sha256:0adbb94fc41bc5d7217a17c51003fea7d0defb87d8a6aff4b95fa45fa029e129"},
+    {file = "jupyter_server-1.23.0.tar.gz", hash = "sha256:45d706e049ca2486491b1bb459c04f34966a606018be5b16287c91e33689e359"},
 ]
 jupyterlab-pygments = [
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@@ -3709,47 +3693,47 @@ markupsafe = [
     {file = "MarkupSafe-2.1.1.tar.gz", hash = "sha256:7f91197cc9e48f989d12e4e6fbc46495c446636dfc81b9ccf50bb0ec74b91d4b"},
 ]
 matplotlib = [
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-    {file = "matplotlib-3.6.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:9dd40505ccc526acaf9a5db1b3029e237c64b58f1249983b28a291c2d6a1d0fa"},
-    {file = "matplotlib-3.6.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:85948b303534b69fd771126764cf883fde2af9b003eb5778cb60f3b46f93d3f6"},
-    {file = "matplotlib-3.6.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:71eced071825005011cdc64efbae2e2c76b8209c18aa487dedf69796fe4b1e40"},
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@@ -4780,16 +4741,16 @@ webencodings = [
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@@ -4862,12 +4823,12 @@ wrapt = [
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 zipp = [
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pyproject.toml

@@ -103,7 +103,7 @@ optional = true
 # Dependencies for Documentation Generation
 #
 rpy2 = "^3.5.2"
-sphinx-multiversion = { git = "https://github.com/petergtz/sphinx-multiversion.git", branch = "override-version-with-refname" }
+sphinx = "^5.3.0"
 sphinxcontrib-googleanalytics = { git = "https://github.com/sphinx-contrib/googleanalytics.git", branch = "master" }
 nbsphinx = "^0.8.9"
 sphinx-rtd-theme = "^1.0.0"