Adding causal-learn as (required) dependency
The gcm module will heavily rely on the independence tests in the causal-learn package, i.e., it cannot be optional. Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
This commit is contained in:
Patrick Bloebaum
Patrick Blöbaum
Родитель
943d4f6796
Коммит
f020de59d5
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@ -108,7 +108,7 @@ python-versions = ">=3.5"
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dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"]
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docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
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tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"]
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tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
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tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"]
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[[package]]
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name = "Babel"
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@ -203,6 +203,26 @@ category = "dev"
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optional = false
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python-versions = "~=3.7"
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[[package]]
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name = "causal-learn"
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version = "0.1.3.0"
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description = "causal-learn Python Package"
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category = "main"
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optional = false
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python-versions = ">=3.6"
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[package.dependencies]
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graphviz = "*"
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matplotlib = "*"
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networkx = "*"
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numpy = "*"
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pandas = "*"
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pydot = "*"
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scikit-learn = "*"
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scipy = "*"
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statsmodels = "*"
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tqdm = "*"
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[[package]]
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name = "causalml"
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version = "0.13.0"
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@ -274,7 +294,7 @@ optional = false
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python-versions = ">=3.6.0"
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[package.extras]
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unicode_backport = ["unicodedata2"]
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unicode-backport = ["unicodedata2"]
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[[package]]
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name = "click"
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@ -308,7 +328,7 @@ name = "contourpy"
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version = "1.0.5"
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description = "Python library for calculating contours of 2D quadrilateral grids"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.7"
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[package.dependencies]
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@ -340,7 +360,7 @@ name = "cycler"
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version = "0.11.0"
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description = "Composable style cycles"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.6"
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[[package]]
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@ -495,7 +515,7 @@ name = "fonttools"
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version = "4.38.0"
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description = "Tools to manipulate font files"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.7"
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[package.extras]
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@ -556,7 +576,7 @@ six = ">=1.9.0"
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[package.extras]
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aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "requests (>=2.20.0,<3.0.0dev)"]
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enterprise_cert = ["cryptography (==36.0.2)", "pyopenssl (==22.0.0)"]
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enterprise-cert = ["cryptography (==36.0.2)", "pyopenssl (==22.0.0)"]
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pyopenssl = ["pyopenssl (>=20.0.0)"]
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reauth = ["pyu2f (>=0.1.5)"]
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@ -591,7 +611,7 @@ name = "graphviz"
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version = "0.20.1"
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description = "Simple Python interface for Graphviz"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.7"
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[package.extras]
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@ -737,7 +757,7 @@ notebook = ["ipywidgets", "notebook"]
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parallel = ["ipyparallel"]
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qtconsole = ["qtconsole"]
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test = ["pytest (<7.1)", "pytest-asyncio", "testpath"]
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test_extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"]
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test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"]
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[[package]]
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name = "ipython_genutils"
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@ -775,9 +795,9 @@ python-versions = ">=3.6.1,<4.0"
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[package.extras]
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colors = ["colorama (>=0.4.3,<0.5.0)"]
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pipfile_deprecated_finder = ["pipreqs", "requirementslib"]
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pipfile-deprecated-finder = ["pipreqs", "requirementslib"]
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plugins = ["setuptools"]
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requirements_deprecated_finder = ["pip-api", "pipreqs"]
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requirements-deprecated-finder = ["pip-api", "pipreqs"]
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[[package]]
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name = "jedi"
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@ -979,7 +999,7 @@ name = "kiwisolver"
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version = "1.4.4"
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description = "A fast implementation of the Cassowary constraint solver"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.7"
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[[package]]
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@ -1042,7 +1062,7 @@ name = "matplotlib"
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version = "3.6.1"
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description = "Python plotting package"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.8"
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[package.dependencies]
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@ -1482,7 +1502,7 @@ name = "Pillow"
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version = "9.2.0"
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description = "Python Imaging Library (Fork)"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.7"
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[package.extras]
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@ -1542,7 +1562,7 @@ pastel = ">=0.2.1,<0.3.0"
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tomli = ">=1.2.2"
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[package.extras]
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poetry_plugin = ["poetry (>=1.0,<2.0)"]
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poetry-plugin = ["poetry (>=1.0,<2.0)"]
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[[package]]
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name = "pox"
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@ -1706,7 +1726,7 @@ name = "pydot"
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version = "1.4.2"
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description = "Python interface to Graphviz's Dot"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
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[package.dependencies]
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@ -1988,7 +2008,7 @@ urllib3 = ">=1.21.1,<1.27"
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[package.extras]
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socks = ["PySocks (>=1.5.6,!=1.5.7)"]
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use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
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use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
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[[package]]
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name = "requests-oauthlib"
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@ -2121,7 +2141,7 @@ name = "setuptools-scm"
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version = "7.0.5"
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description = "the blessed package to manage your versions by scm tags"
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category = "main"
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optional = true
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optional = false
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python-versions = ">=3.7"
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[package.dependencies]
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@ -2263,7 +2283,7 @@ python-versions = ">=3.6"
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sphinx = ">=1.8"
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[package.extras]
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code_style = ["pre-commit (==2.12.1)"]
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code-style = ["pre-commit (==2.12.1)"]
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rtd = ["ipython", "myst-nb", "sphinx", "sphinx-book-theme"]
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[[package]]
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@ -2325,7 +2345,7 @@ test = ["pytest"]
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[[package]]
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name = "sphinxcontrib-googleanalytics"
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version = "0.2.dev20221007"
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version = "0.2.dev20220919"
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description = "Sphinx extension googleanalytics"
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category = "dev"
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optional = false
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@ -2801,7 +2821,7 @@ pygraphviz = ["pygraphviz"]
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[metadata]
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lock-version = "1.1"
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python-versions = ">=3.8,<3.10"
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content-hash = "f5b832e22c4a25fa45dcc372bb4899a71fcb840923fe872dc073387f227245fc"
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content-hash = "77cdead5a11485aaa180c3ebb5c24971b7854b3eda92694ae4d223f972e3418f"
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[metadata.files]
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absl-py = [
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@ -2920,6 +2940,10 @@ cachetools = [
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{file = "cachetools-5.2.0-py3-none-any.whl", hash = "sha256:f9f17d2aec496a9aa6b76f53e3b614c965223c061982d434d160f930c698a9db"},
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{file = "cachetools-5.2.0.tar.gz", hash = "sha256:6a94c6402995a99c3970cc7e4884bb60b4a8639938157eeed436098bf9831757"},
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]
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causal-learn = [
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{file = "causal-learn-0.1.3.0.tar.gz", hash = "sha256:8242bced95e11eb4b4ee5f8085c528a25496d20c87bd5f3fcdb17d4678d7de63"},
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{file = "causal_learn-0.1.3.0-py3-none-any.whl", hash = "sha256:d7271b0a60e839b725735373c4c5c012446dd216f17cc4b46aed550e08054d72"},
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]
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causalml = []
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certifi = [
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{file = "certifi-2022.9.24-py3-none-any.whl", hash = "sha256:90c1a32f1d68f940488354e36370f6cca89f0f106db09518524c88d6ed83f382"},
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@ -3891,8 +3915,8 @@ Pillow = [
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{file = "Pillow-9.2.0-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:37ff6b522a26d0538b753f0b4e8e164fdada12db6c6f00f62145d732d8a3152e"},
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{file = "Pillow-9.2.0-cp310-cp310-win32.whl", hash = "sha256:c79698d4cd9318d9481d89a77e2d3fcaeff5486be641e60a4b49f3d2ecca4e28"},
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{file = "Pillow-9.2.0-cp310-cp310-win_amd64.whl", hash = "sha256:254164c57bab4b459f14c64e93df11eff5ded575192c294a0c49270f22c5d93d"},
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{file = "Pillow-9.2.0-cp311-cp311-macosx_10_10_universal2.whl", hash = "sha256:408673ed75594933714482501fe97e055a42996087eeca7e5d06e33218d05aa8"},
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{file = "Pillow-9.2.0-cp311-cp311-macosx_11_0_universal2.whl", hash = "sha256:727dd1389bc5cb9827cbd1f9d40d2c2a1a0c9b32dd2261db522d22a604a6eec9"},
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{file = "Pillow-9.2.0-cp311-cp311-macosx_10_10_x86_64.whl", hash = "sha256:adabc0bce035467fb537ef3e5e74f2847c8af217ee0be0455d4fec8adc0462fc"},
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{file = "Pillow-9.2.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:336b9036127eab855beec9662ac3ea13a4544a523ae273cbf108b228ecac8437"},
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{file = "Pillow-9.2.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:50dff9cc21826d2977ef2d2a205504034e3a4563ca6f5db739b0d1026658e004"},
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{file = "Pillow-9.2.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:cb6259196a589123d755380b65127ddc60f4c64b21fc3bb46ce3a6ea663659b0"},
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{file = "Pillow-9.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7b0554af24df2bf96618dac71ddada02420f946be943b181108cac55a7a2dcd4"},
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@ -3981,7 +4005,6 @@ prompt-toolkit = [
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{file = "prompt_toolkit-3.0.31.tar.gz", hash = "sha256:9ada952c9d1787f52ff6d5f3484d0b4df8952787c087edf6a1f7c2cb1ea88148"},
|
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]
|
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protobuf = [
|
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{file = "protobuf-3.19.6-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:5e2e5d83c75fb61be40c001cfbcb0e5f912a30e147b369e0ed3744406098a779"},
|
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{file = "protobuf-3.19.6-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:010be24d5a44be7b0613750ab40bc8b8cedc796db468eae6c779b395f50d1fa1"},
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{file = "protobuf-3.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:11478547958c2dfea921920617eb457bc26867b0d1aa065ab05f35080c5d9eb6"},
|
||||
{file = "protobuf-3.19.6-cp310-cp310-win32.whl", hash = "sha256:559670e006e3173308c9254d63facb2c03865818f22204037ab76f7a0ff70b5f"},
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@ -4059,34 +4082,12 @@ py = [
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{file = "py-1.11.0.tar.gz", hash = "sha256:51c75c4126074b472f746a24399ad32f6053d1b34b68d2fa41e558e6f4a98719"},
|
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]
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pyasn1 = [
|
||||
{file = "pyasn1-0.4.8-py2.4.egg", hash = "sha256:fec3e9d8e36808a28efb59b489e4528c10ad0f480e57dcc32b4de5c9d8c9fdf3"},
|
||||
{file = "pyasn1-0.4.8-py2.5.egg", hash = "sha256:0458773cfe65b153891ac249bcf1b5f8f320b7c2ce462151f8fa74de8934becf"},
|
||||
{file = "pyasn1-0.4.8-py2.6.egg", hash = "sha256:5c9414dcfede6e441f7e8f81b43b34e834731003427e5b09e4e00e3172a10f00"},
|
||||
{file = "pyasn1-0.4.8-py2.7.egg", hash = "sha256:6e7545f1a61025a4e58bb336952c5061697da694db1cae97b116e9c46abcf7c8"},
|
||||
{file = "pyasn1-0.4.8-py2.py3-none-any.whl", hash = "sha256:39c7e2ec30515947ff4e87fb6f456dfc6e84857d34be479c9d4a4ba4bf46aa5d"},
|
||||
{file = "pyasn1-0.4.8-py3.1.egg", hash = "sha256:78fa6da68ed2727915c4767bb386ab32cdba863caa7dbe473eaae45f9959da86"},
|
||||
{file = "pyasn1-0.4.8-py3.2.egg", hash = "sha256:08c3c53b75eaa48d71cf8c710312316392ed40899cb34710d092e96745a358b7"},
|
||||
{file = "pyasn1-0.4.8-py3.3.egg", hash = "sha256:03840c999ba71680a131cfaee6fab142e1ed9bbd9c693e285cc6aca0d555e576"},
|
||||
{file = "pyasn1-0.4.8-py3.4.egg", hash = "sha256:7ab8a544af125fb704feadb008c99a88805126fb525280b2270bb25cc1d78a12"},
|
||||
{file = "pyasn1-0.4.8-py3.5.egg", hash = "sha256:e89bf84b5437b532b0803ba5c9a5e054d21fec423a89952a74f87fa2c9b7bce2"},
|
||||
{file = "pyasn1-0.4.8-py3.6.egg", hash = "sha256:014c0e9976956a08139dc0712ae195324a75e142284d5f87f1a87ee1b068a359"},
|
||||
{file = "pyasn1-0.4.8-py3.7.egg", hash = "sha256:99fcc3c8d804d1bc6d9a099921e39d827026409a58f2a720dcdb89374ea0c776"},
|
||||
{file = "pyasn1-0.4.8.tar.gz", hash = "sha256:aef77c9fb94a3ac588e87841208bdec464471d9871bd5050a287cc9a475cd0ba"},
|
||||
]
|
||||
pyasn1-modules = [
|
||||
{file = "pyasn1-modules-0.2.8.tar.gz", hash = "sha256:905f84c712230b2c592c19470d3ca8d552de726050d1d1716282a1f6146be65e"},
|
||||
{file = "pyasn1_modules-0.2.8-py2.4.egg", hash = "sha256:0fe1b68d1e486a1ed5473f1302bd991c1611d319bba158e98b106ff86e1d7199"},
|
||||
{file = "pyasn1_modules-0.2.8-py2.5.egg", hash = "sha256:fe0644d9ab041506b62782e92b06b8c68cca799e1a9636ec398675459e031405"},
|
||||
{file = "pyasn1_modules-0.2.8-py2.6.egg", hash = "sha256:a99324196732f53093a84c4369c996713eb8c89d360a496b599fb1a9c47fc3eb"},
|
||||
{file = "pyasn1_modules-0.2.8-py2.7.egg", hash = "sha256:0845a5582f6a02bb3e1bde9ecfc4bfcae6ec3210dd270522fee602365430c3f8"},
|
||||
{file = "pyasn1_modules-0.2.8-py2.py3-none-any.whl", hash = "sha256:a50b808ffeb97cb3601dd25981f6b016cbb3d31fbf57a8b8a87428e6158d0c74"},
|
||||
{file = "pyasn1_modules-0.2.8-py3.1.egg", hash = "sha256:f39edd8c4ecaa4556e989147ebf219227e2cd2e8a43c7e7fcb1f1c18c5fd6a3d"},
|
||||
{file = "pyasn1_modules-0.2.8-py3.2.egg", hash = "sha256:b80486a6c77252ea3a3e9b1e360bc9cf28eaac41263d173c032581ad2f20fe45"},
|
||||
{file = "pyasn1_modules-0.2.8-py3.3.egg", hash = "sha256:65cebbaffc913f4fe9e4808735c95ea22d7a7775646ab690518c056784bc21b4"},
|
||||
{file = "pyasn1_modules-0.2.8-py3.4.egg", hash = "sha256:15b7c67fabc7fc240d87fb9aabf999cf82311a6d6fb2c70d00d3d0604878c811"},
|
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{file = "pyasn1_modules-0.2.8-py3.5.egg", hash = "sha256:426edb7a5e8879f1ec54a1864f16b882c2837bfd06eee62f2c982315ee2473ed"},
|
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{file = "pyasn1_modules-0.2.8-py3.6.egg", hash = "sha256:cbac4bc38d117f2a49aeedec4407d23e8866ea4ac27ff2cf7fb3e5b570df19e0"},
|
||||
{file = "pyasn1_modules-0.2.8-py3.7.egg", hash = "sha256:c29a5e5cc7a3f05926aff34e097e84f8589cd790ce0ed41b67aed6857b26aafd"},
|
||||
]
|
||||
pycodestyle = [
|
||||
{file = "pycodestyle-2.8.0-py2.py3-none-any.whl", hash = "sha256:720f8b39dde8b293825e7ff02c475f3077124006db4f440dcbc9a20b76548a20"},
|
||||
|
|
@ -4536,15 +4537,19 @@ tensorflow-estimator = [
|
|||
tensorflow-io-gcs-filesystem = [
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:babca2a12755badd1517043f9d633823533fbd7b463d7d36e9e6179b246731dc"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:b3a0ebfeac11507f6fc96162b8b22010b7d715bb0848311e54ef18d88f07014a"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c22c71ee80f131b2d55d53a3c66a910156004c2dcba976cabd8deeb5e236397a"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp310-cp310-win_amd64.whl", hash = "sha256:244754af85090d3fdd67c0b160bce8509e9a43fefccb295e3c9b72df21d9db61"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp37-cp37m-macosx_10_14_x86_64.whl", hash = "sha256:3e510134375ed0467d1d90cd80b762b68e93b429fe7b9b38a953e3fe4306536f"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:e21842a0a7c906525884bdbdc6d82bcfec98c6da5bafe7bfc89fd7253fcab5cf"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:043008e51e920028b7c564795d82d2487b0baf6bdb23cb9d84796c4a8fcab668"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp37-cp37m-win_amd64.whl", hash = "sha256:5c809435233893c0df80dce3d10d310885c86dcfb08ca9ebb55e0fcb8a4e13ac"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp38-cp38-macosx_10_14_x86_64.whl", hash = "sha256:4cc906a12bbd788be071e2dab333f953e82938b77f93429e55ad4b4bfd77072a"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:1ad97ef862c1fb3f7ba6fe3cb5de25cb41d1c55121deaf00c590a5726a7afe88"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:564a7de156650cac9e1e361dabd6b5733a4ef31f5f11ef5eebf7fe694128334f"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp38-cp38-win_amd64.whl", hash = "sha256:9cf6a8efc35a04a8c3d5ec4c6b6e4931a6bc8d4e1f9d9aa0bad5fd272941c886"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp39-cp39-macosx_10_14_x86_64.whl", hash = "sha256:f7d24da555e2a1fe890b020b1953819ad990e31e63088a77ce87b7ffa67a7aaf"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:ed17c281a28df9ab0547cdf166e885208d2a43db0f0f8fbe66addc4e23ee36ff"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8d2c01ba916866204b70f96103bbaa24655b1e7b416b399e49dce893a7835aa7"},
|
||||
{file = "tensorflow_io_gcs_filesystem-0.27.0-cp39-cp39-win_amd64.whl", hash = "sha256:152f4c20e5341d486df35f7ce9751a441ed89b43c1036491cd2b30a742fbe20a"},
|
||||
]
|
||||
termcolor = [
|
||||
|
|
|
|||
|
|
@ -68,6 +68,7 @@ llvmlite = { version = "^0.36.0", optional = true }
|
|||
|
||||
#Plotting Extra
|
||||
matplotlib = { version = "^3.5.3", optional = true }
|
||||
causal-learn = "^0.1.3.0"
|
||||
|
||||
[tool.poetry.extras]
|
||||
econml = ["econml"]
|
||||
|
|
|
|||
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