The "core.logAllRefUpdates" that used to be boolean has been
enhanced to take 'always' as well, to record ref updates to refs
other than the ones that are expected to be updated (i.e. branches,
remote-tracking branches and notes).
* cw/log-updates-for-all-refs-really:
doc: add note about ignoring '--no-create-reflog'
update-ref: add test cases for bare repository
refs: add option core.logAllRefUpdates = always
config: add markup to core.logAllRefUpdates doc
When a submodule "A", which has another submodule "B" nested within
it, is "absorbed" into the top-level superproject, the inner
submodule "B" used to be left in a strange state. The logic to
adjust the .git pointers in these submodules has been corrected.
* sb/submodule-recursive-absorb:
submodule absorbing: fix worktree/gitdir pointers recursively for non-moves
cache.h: expose the dying procedure for reading gitlinks
setup: add gentle version of resolve_git_dir
When core.logallrefupdates is true, we only create a new reflog for refs
that are under certain well-known hierarchies. The reason is that we
know that some hierarchies (like refs/tags) are not meant to change, and
that unknown hierarchies might not want reflogs at all (e.g., a
hypothetical refs/foo might be meant to change often and drop old
history immediately).
However, sometimes it is useful to override this decision and simply log
for all refs, because the safety and audit trail is more important than
the performance implications of keeping the log around.
This patch introduces a new "always" mode for the core.logallrefupdates
option which will log updates to everything under refs/, regardless
where in the hierarchy it is (we still will not log things like
ORIG_HEAD and FETCH_HEAD, which are known to be transient).
Based-on-patch-by: Jeff King <peff@peff.net>
Signed-off-by: Cornelius Weig <cornelius.weig@tngtech.com>
Reviewed-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a function that returns a buffer containing the absolute path of its
argument and a semantic patch for its intended use. It avoids an extra
string copy to a static buffer.
Signed-off-by: Rene Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In a later patch we want to react to only a subset of errors, defaulting
the rest to die as usual. Separate the block that takes care of dying
into its own function so we have easy access to it.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This follows a93bedada (setup: add gentle version of read_gitfile,
2015-06-09), and assumes the same reasoning. resolve_git_dir is unsuited
for speculative calls, so we want to use the gentle version to find out
about potential errors.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Do this by moving the existing documentation from
read-cache.c to cache.h.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Code clean-up in the pathspec API.
* bw/pathspec-cleanup:
pathspec: rename prefix_pathspec to init_pathspec_item
pathspec: small readability changes
pathspec: create strip submodule slash helpers
pathspec: create parse_element_magic helper
pathspec: create parse_long_magic function
pathspec: create parse_short_magic function
pathspec: factor global magic into its own function
pathspec: simpler logic to prefix original pathspec elements
pathspec: always show mnemonic and name in unsupported_magic
pathspec: remove unused variable from unsupported_magic
pathspec: copy and free owned memory
pathspec: remove the deprecated get_pathspec function
ls-tree: convert show_recursive to use the pathspec struct interface
dir: convert fill_directory to use the pathspec struct interface
dir: remove struct path_simplify
mv: remove use of deprecated 'get_pathspec()'
"git grep" has been taught to optionally recurse into submodules.
* bw/grep-recurse-submodules:
grep: search history of moved submodules
grep: enable recurse-submodules to work on <tree> objects
grep: optionally recurse into submodules
grep: add submodules as a grep source type
submodules: load gitmodules file from commit sha1
submodules: add helper to determine if a submodule is initialized
submodules: add helper to determine if a submodule is populated
real_path: canonicalize directory separators in root parts
real_path: have callers use real_pathdup and strbuf_realpath
real_path: create real_pathdup
real_path: convert real_path_internal to strbuf_realpath
real_path: resolve symlinks by hand
It's surprisingly hard to ask the sha1_file code to open a
_specific_ incarnation of a loose object. Most of the
functions take a sha1, and loop over the various object
types (packed versus loose) and locations (local versus
alternates) at a low level.
However, some tools like fsck need to look at a specific
file. This patch gives them a function they can use to open
the loose object at a given path.
The implementation unfortunately ends up repeating bits of
related functions, but there's not a good way around it
without some major refactoring of the whole sha1_file stack.
We need to mmap the specific file, then partially read the
zlib stream to know whether we're streaming or not, and then
finally either stream it or copy the data to a buffer.
We can do that by assembling some of the more arcane
internal sha1_file functions, but we end up having to
essentially reimplement unpack_sha1_file(), along with the
streaming bits of check_sha1_signature().
Still, most of the ugliness is contained in the new
function, and the interface is clean enough that it may be
reusable (though it seems unlikely anything but git-fsck
would care about opening a specific file).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Improve constness of the index_state parameter to the
'read_blob_data_from_index' function.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The codeflow of setting NOATIME and CLOEXEC on file descriptors Git
opens has been simplified.
We may want to drop the tip one, but we'll see.
* jc/git-open-cloexec:
sha1_file: stop opening files with O_NOATIME
git_open_cloexec(): use fcntl(2) w/ FD_CLOEXEC fallback
git_open(): untangle possible NOATIME and CLOEXEC interactions
Now that all callers of the old 'get_pathspec' interface have been
migrated to use the new pathspec struct interface it can be removed
from the codebase.
Since there are no more users of the '_raw' field in the pathspec struct
it can also be removed. This patch also removes the old functionality
of modifying the const char **argv array that was passed into
parse_pathspec. Instead the constructed 'match' string (which is a
pathspec element with the prefix prepended) is only stored in its
corresponding pathspec_item entry.
Signed-off-by: Brandon Williams <bmwill@google.com>
Reviewed-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
teach submodules to load a '.gitmodules' file from a commit sha1. This
enables the population of the submodule_cache to be based on the state
of the '.gitmodules' file from a particular commit.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Create real_pathdup which returns a caller owned string of the resolved
realpath based on the provide path.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Change the name of real_path_internal to strbuf_realpath. In addition
push the static strbuf up to its callers and instead take as a
parameter a pointer to a strbuf to use for the final result.
This change makes strbuf_realpath reentrant.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
There are three codepaths that use a variable whose name is
pack_compression_level to affect how objects and deltas sent to a
packfile is compressed. Unlike zlib_compression_level that controls
the loose object compression, however, this variable was static to
each of these codepaths. Two of them read the pack.compression
configuration variable, using core.compression as the default, and
one of them also allowed overriding it from the command line.
The other codepath in bulk-checkin did not pay any attention to the
configuration.
Unify the configuration parsing to git_default_config(), where we
implement the parsing of core.loosecompression and core.compression
and make the former override the latter, by moving code to parse
pack.compression and also allow core.compression to give default to
this variable.
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When we open object files, we try to do so with O_NOATIME.
This dates back to 144bde78e9 (Use O_NOATIME when opening
the sha1 files., 2005-04-23), which is an optimization to
avoid creating a bunch of dirty inodes when we're accessing
many objects. But a few things have changed since then:
1. In June 2005, git learned about packfiles, which means
we would do a lot fewer atime updates (rather than one
per object access, we'd generally get one per packfile).
2. In late 2006, Linux learned about "relatime", which is
generally the default on modern installs. So
performance around atimes updates is a non-issue there
these days.
All the world isn't Linux, but as it turns out, Linux
is the only platform to implement O_NOATIME in the
first place.
So it's very unlikely that this code is helping anybody
these days.
Helped-by: Jeff King <peff@peff.net>
[jc: took idea and log message from peff]
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Git generally does not explicitly close file descriptors that were
open in the parent process when spawning a child process, but most
of the time the child does not want to access them. As Windows does
not allow removing or renaming a file that has a file descriptor
open, a slow-to-exit child can even break the parent process by
holding onto them. Use O_CLOEXEC flag to open files in various
codepaths.
* ls/git-open-cloexec:
read-cache: make sure file handles are not inherited by child processes
sha1_file: open window into packfiles with O_CLOEXEC
sha1_file: rename git_open_noatime() to git_open()
When fetching from a remote that has many tags that are irrelevant
to branches we are following, we used to waste way too many cycles
when checking if the object pointed at by a tag (that we are not
going to fetch!) exists in our repository too carefully.
* jk/fetch-quick-tag-following:
fetch: use "quick" has_sha1_file for tag following
The way we structured the fallback/retry mechanism for opening with
O_NOATIME and O_CLOEXEC meant that if we failed due to lack of
support to open the file with O_NOATIME option (i.e. EINVAL), we
would still try to drop O_CLOEXEC first and retry, and then drop
O_NOATIME. A platform on which O_NOATIME is defined in the header
without support from the kernel wouldn't have a chance to open with
O_CLOEXEC option due to this code structure.
Arguably, O_CLOEXEC is more important than O_NOATIME, as the latter
is mostly about performance, while the former can affect correctness.
Instead use O_CLOEXEC to open the file, and then use fcntl(2) to set
O_NOATIME on the resulting file descriptor. open(2) itself does not
cause atime to be updated according to Linus [*1*].
The helper to do the former can be usable in the codepath in
ce_compare_data() that was recently added to open a file descriptor
with O_CLOEXEC; use it while we are at it.
*1* <CA+55aFw83E+zOd+z5h-CA-3NhrLjVr-anL6pubrSWttYx3zu8g@mail.gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Update "git diff --no-index" codepath not to try to peek into .git/
directory that happens to be under the current directory, when we
know we are operating outside any repository.
* jk/no-looking-at-dotgit-outside-repo:
diff: handle sha1 abbreviations outside of repository
diff_aligned_abbrev: use "struct oid"
diff_unique_abbrev: rename to diff_aligned_abbrev
find_unique_abbrev: use 4-buffer ring
test-*-cache-tree: setup git dir
read info/{attributes,exclude} only when in repository
Updates the way approximate count of total objects is computed
while attempting to come up with a unique abbreviated object name,
which in turn needs to estimate how many hexdigits are necessary to
ensure uniqueness.
* jk/abbrev-auto:
find_unique_abbrev: move logic out of get_short_sha1()
Allow the default abbreviation length, which has historically been
7, to scale as the repository grows. The logic suggests to use 12
hexdigits for the Linux kernel, and 9 to 10 for Git itself.
* lt/abbrev-auto:
abbrev: auto size the default abbreviation
abbrev: prepare for new world order
abbrev: add FALLBACK_DEFAULT_ABBREV to prepare for auto sizing
Some code paths want to format multiple abbreviated sha1s in
the same output line. Because we use a single static buffer
for our return value, they have to either break their output
into several calls or allocate their own arrays and use
find_unique_abbrev_r().
Intead, let's mimic sha1_to_hex() and use a ring of several
buffers, so that the return value stays valid through
multiple calls. This shortens some of the callers, and makes
it harder to for them to make a silly mistake.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When fetching from a remote that has many tags that are irrelevant
to branches we are following, we used to waste way too many cycles
when checking if the object pointed at by a tag (that we are not
going to fetch!) exists in our repository too carefully.
* jk/fetch-quick-tag-following:
fetch: use "quick" has_sha1_file for tag following
"git ls-files" learned "--recurse-submodules" option that can be
used to get a listing of tracked files across submodules (i.e. this
only works with "--cached" option, not for listing untracked or
ignored files). This would be a useful tool to sit on the upstream
side of a pipe that is read with xargs to work on all working tree
files from the top-level superproject.
* bw/ls-files-recurse-submodules:
ls-files: add pathspec matching for submodules
ls-files: pass through safe options for --recurse-submodules
ls-files: optionally recurse into submodules
git: make super-prefix option
This function is meant to be used when reading from files in the
object store, and the original objective was to avoid smudging atime
of loose object files too often, hence its name. Because we'll be
extending its role in the next commit to also arrange the file
descriptors they return auto-closed in the child processes, rename
it to lose "noatime" part that is too specific.
Signed-off-by: Lars Schneider <larsxschneider@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Codepaths involved in interacting alternate object store have
been cleaned up.
* jk/alt-odb-cleanup:
alternates: use fspathcmp to detect duplicates
sha1_file: always allow relative paths to alternates
count-objects: report alternates via verbose mode
fill_sha1_file: write into a strbuf
alternates: store scratch buffer as strbuf
fill_sha1_file: write "boring" characters
alternates: use a separate scratch space
alternates: encapsulate alt->base munging
alternates: provide helper for allocating alternate
alternates: provide helper for adding to alternates list
link_alt_odb_entry: refactor string handling
link_alt_odb_entry: handle normalize_path errors
t5613: clarify "too deep" recursion tests
t5613: do not chdir in main process
t5613: whitespace/style cleanups
t5613: use test_must_fail
t5613: drop test_valid_repo function
t5613: drop reachable_via function
In order for the receiving end of "git push" to inspect the
received history and decide to reject the push, the objects sent
from the sending end need to be made available to the hook and
the mechanism for the connectivity check, and this was done
traditionally by storing the objects in the receiving repository
and letting "git gc" to expire it. Instead, store the newly
received objects in a temporary area, and make them available by
reusing the alternate object store mechanism to them only while we
decide if we accept the check, and once we decide, either migrate
them to the repository or purge them immediately.
* jk/quarantine-received-objects:
tmp-objdir: do not migrate files starting with '.'
tmp-objdir: put quarantine information in the environment
receive-pack: quarantine objects until pre-receive accepts
tmp-objdir: introduce API for temporary object directories
check_connected: accept an env argument
When we auto-follow tags in a fetch, we look at all of the
tags advertised by the remote and fetch ones where we don't
already have the tag, but we do have the object it peels to.
This involves a lot of calls to has_sha1_file(), some of
which we can reasonably expect to fail. Since 45e8a74
(has_sha1_file: re-check pack directory before giving up,
2013-08-30), this may cause many calls to
reprepare_packed_git(), which is potentially expensive.
This has gone unnoticed for several years because it
requires a fairly unique setup to matter:
1. You need to have a lot of packs on the client side to
make reprepare_packed_git() expensive (the most
expensive part is finding duplicates in an unsorted
list, which is currently quadratic).
2. You need a large number of tag refs on the server side
that are candidates for auto-following (i.e., that the
client doesn't have). Each one triggers a re-read of
the pack directory.
3. Under normal circumstances, the client would
auto-follow those tags and after one large fetch, (2)
would no longer be true. But if those tags point to
history which is disconnected from what the client
otherwise fetches, then it will never auto-follow, and
those candidates will impact it on every fetch.
So when all three are true, each fetch pays an extra
O(nr_tags * nr_packs^2) cost, mostly in string comparisons
on the pack names. This was exacerbated by 47bf4b0
(prepare_packed_git_one: refactor duplicate-pack check,
2014-06-30) which uses a slightly more expensive string
check, under the assumption that the duplicate check doesn't
happen very often (and it shouldn't; the real problem here
is how often we are calling reprepare_packed_git()).
This patch teaches fetch to use HAS_SHA1_QUICK to sacrifice
accuracy for speed, in cases where we might be racy with a
simultaneous repack. This is similar to the fix in 0eeb077
(index-pack: avoid excessive re-reading of pack directory,
2015-06-09). As with that case, it's OK for has_sha1_file()
occasionally say "no I don't have it" when we do, because
the worst case is not a corruption, but simply that we may
fail to auto-follow a tag that points to it.
Here are results from the included perf script, which sets
up a situation similar to the one described above:
Test HEAD^ HEAD
----------------------------------------------------------
5550.4: fetch 11.21(10.42+0.78) 0.08(0.04+0.02) -99.3%
Reported-by: Vegard Nossum <vegard.nossum@oracle.com>
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
"git pack-objects" in a repository with many packfiles used to
spend a lot of time looking for/at objects in them; the accesses to
the packfiles are now optimized by checking the most-recently-used
packfile first.
* jk/pack-objects-optim-mru:
pack-objects: use mru list when iterating over packs
pack-objects: break delta cycles before delta-search phase
sha1_file: make packed_object_info public
provide an initializer for "struct object_info"
The presence of the GIT_QUARANTINE_PATH variable lets any
called programs know that they're operating in a temporary
object directory (and where that directory is).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
We pre-size the scratch buffer to hold a loose object
filename of the form "xx/yyyy...", which leads to allocation
code that is hard to verify. We have to use some magic
numbers during the initial allocation, and then writers must
blindly assume that the buffer is big enough. Using a strbuf
makes it more clear that we cannot overflow.
Unfortunately, we do still need some magic numbers to grow
our strbuf before calling fill_sha1_path(), but the strbuf
growth is much closer to the point of use. This makes it
easier to see that it's correct, and opens the possibility
of pushing it even further down if fill_sha1_path() learns
to work on strbufs.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The alternate_object_database struct uses a single buffer
both for storing the path to the alternate, and as a scratch
buffer for forming object names. This is efficient (since
otherwise we'd end up storing the path twice), but it makes
life hard for callers who just want to know the path to the
alternate. They have to remember to stop reading after
"alt->name - alt->base" bytes, and to subtract one for the
trailing '/'.
It would be much simpler if they could simply access a
NUL-terminated path string. We could encapsulate this in a
function which puts a NUL in the scratch buffer and returns
the string, but that opens up questions about the lifetime
of the result. The first time another caller uses the
alternate, the scratch buffer may get other data tacked onto
it.
Let's instead just store the root path separately from the
scratch buffer. There aren't enough alternates being stored
for the duplicated data to matter for performance, and this
keeps things simple and safe for the callers.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Allocating a struct alternate_object_database is tricky, as
we must over-allocate the buffer to provide scratch space,
and then put in particular '/' and NUL markers.
Let's encapsulate this in a function so that the complexity
doesn't leak into callers (and so that we can modify it
later).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The submodule code wants to temporarily add an alternate
object store to our in-memory alt_odb list, but does it
manually. Let's provide a helper so it can reuse the code in
link_alt_odb_entry().
While we're adding our new add_to_alternates_memory(), let's
document add_to_alternates_file(), as the two are related.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a super-prefix environment variable 'GIT_INTERNAL_SUPER_PREFIX'
which can be used to specify a path from above a repository down to its
root. When such a super-prefix is specified, the paths reported by Git
are prefixed with it to make them relative to that directory "above".
The paths given by the user on the command line
(e.g. "git subcmd --output-file=path/to/a/file" and pathspecs) are taken
relative to the directory "above" to match.
The immediate use of this option is by commands which have a
--recurse-submodule option in order to give context to submodules about
how they were invoked. This option is currently only allowed for
builtins which support a super-prefix.
Signed-off-by: Brandon Williams <bmwill@google.com>
Reviewed-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When given an abbreviated object name that is not (or more
realistically, "no longer") unique, we gave a fatal error
"ambiguous argument". This error is now accompanied by hints that
lists the objects that begins with the given prefix. During the
course of development of this new feature, numerous minor bugs were
uncovered and corrected, the most notable one of which is that we
gave "short SHA1 xxxx is ambiguous." twice without good reason.
* jk/ambiguous-short-object-names:
get_short_sha1: make default disambiguation configurable
get_short_sha1: list ambiguous objects on error
for_each_abbrev: drop duplicate objects
sha1_array: let callbacks interrupt iteration
get_short_sha1: mark ambiguity error for translation
get_short_sha1: NUL-terminate hex prefix
get_short_sha1: refactor init of disambiguation code
get_short_sha1: parse tags when looking for treeish
get_sha1: propagate flags to child functions
get_sha1: avoid repeating ourselves via ONLY_TO_DIE
get_sha1: detect buggy calls with multiple disambiguators
The get_short_sha1() is only about reading short sha1s; we
do call it in a loop to check "is this long enough" for each
object, but otherwise it should not need to know about
things like our default_abbrev setting.
So instead of asking it to set default_automatic_abbrev as a
side-effect, let's just have find_unique_abbrev() pick the
right place to start its loop. This requires a separate
approximate_object_count() function, but that naturally
belongs with the rest of sha1_file.c.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
"git init" tried to record core.worktree in the repository's
'config' file when GIT_WORK_TREE environment variable was set and
it was different from where GIT_DIR appears as ".git" at its top,
but the logic was faulty when .git is a "gitdir:" file that points
at the real place, causing trouble in working trees that are
managed by "git worktree". This has been corrected.
* nd/init-core-worktree-in-multi-worktree-world:
init: kill git_link variable
init: do not set unnecessary core.worktree
init: kill set_git_dir_init()
init: call set_git_dir_init() from within init_db()
init: correct re-initialization from a linked worktree
In fairly early days we somehow decided to abbreviate object names
down to 7-hexdigits, but as projects grow, it is becoming more and
more likely to see such a short object names made in earlier days
and recorded in the log messages no longer unique.
Currently the Linux kernel project needs 11 to 12 hexdigits, while
Git itself needs 10 hexdigits to uniquely identify the objects they
have, while many smaller projects may still be fine with the
original 7-hexdigit default. One-size does not fit all projects.
Introduce a mechanism, where we estimate the number of objects in
the repository upon the first request to abbreviate an object name
with the default setting and come up with a sane default for the
repository. Based on the expectation that we would see collision in
a repository with 2^(2N) objects when using object names shortened
to first N bits, use sufficient number of hexdigits to cover the
number of objects in the repository. Each hexdigit (4-bits) we add
to the shortened name allows us to have four times (2-bits) as many
objects in the repository.
Signed-off-by: Linus Torvalds <torvalds@linux-foundation.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
We'll be introducing a new way to decide the default abbreviation
length by initialising DEFAULT_ABBREV to -1 to signal the first call
to "find unique abbreviation" codepath to compute a reasonable value
based on the number of objects we have to avoid collisions.
We have long relied on DEFAULT_ABBREV being a positive concrete
value that is used as the abbreviation length when no extra
configuration or command line option has overridden it. Some
codepaths wants to use such a positive concrete default value
even before making their first request to actually trigger the
computation for the auto sized default.
Introduce FALLBACK_DEFAULT_ABBREV and use it to the code that
attempts to align the report from "git fetch". For now, this
macro is also used to initialize the default_abbrev variable,
but the auto-sizing code will use -1 and then use the value of
FALLBACK_DEFAULT_ABBREV as the starting point of auto-sizing.
Signed-off-by: Junio C Hamano <gitster@pobox.com>
"git add --chmod=+x <pathspec>" added recently only toggled the
executable bit for paths that are either new or modified. This has
been corrected to flip the executable bit for all paths that match
the given pathspec.
* tg/add-chmod+x-fix:
t3700-add: do not check working tree file mode without POSIXPERM
t3700-add: create subdirectory gently
add: modify already added files when --chmod is given
read-cache: introduce chmod_index_entry
update-index: add test for chmod flags