Граф коммитов

9 Коммитов

Автор SHA1 Сообщение Дата
Kenza Bouzid 273e84e6bb
ENH: Add non normalized confusion matrix to plot options (#791)
Add non normalized confusion matrix to plot options
2023-03-14 13:31:45 +00:00
Kenza Bouzid 1fa499b00d
MNT: Upgrade pytorch to 1.11 (#833)
Upgrade pytorch to 1.11
Add static graph flag
2023-03-10 11:01:59 +00:00
Anton Schwaighofer a055dfae9f
ENH: Add code to create montages from WSI (#787) 2023-02-09 19:50:07 +00:00
Harshita Sharma ebc030e5f2
ENH: Stratify PR and ROC curves by metadata (#788)
In this PR:
- `stratify_plots_by` parameter is introduced in BaseMIL to specify
metadata column on which the output PR and ROC curves can be stratified
- Functionality is added to plot the output curves stratified by
metadata
- Corresponding tests are added

---------

Co-authored-by: Harshita Sharma <t-hsharma@microsoft.com>
2023-02-08 12:33:43 +00:00
Harshita Sharma ad72411cf4
ENH: Add ROC curve to plot options (#780)
ROC curve is added as a plot option. Tests are updated for ROC and PR
curves

---------

Co-authored-by: Harshita Sharma <t-hsharma@microsoft.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-02-03 13:20:01 +00:00
Kenza Bouzid 7d96412236
ENH: Add extra slides to attention heatmaps plots (#778)
Add option to include an extra slide to the the attention heatmap plots.
2023-02-01 15:46:18 +00:00
Kenza Bouzid a5a18a8a92
ENH: Improve Attention Heatmaps plots (#723)
- Add attention histogram plot option
- Add original slide without overlay to heatmaps plots 
- Change colormap from Reds to Spectral_r
- Remove rectangle borders for smoother heatmaps
2023-01-10 11:25:07 +00:00
Kenza Bouzid b8720bfdd3
BUG: Fix probability scores displayed on histo plots (#581)
We used to display probabilities of ground truth labels instead of predicted ones.
2022-08-22 13:17:10 +01:00
Anton Schwaighofer 2407f93f6c
ENH: Rename histopathology folder to match overall naming scheme (#512)
Top-level folder has been renamed from `hi-ml-histopathology` to hi-ml-cpath, the Python namespace from `histopathology` to `health_cpath`.
2022-07-18 13:40:47 +01:00