Граф коммитов

27 Коммитов

Автор SHA1 Сообщение Дата
mebristo c7bdf6ac0a
Add HTML report (#152)
* Add HTML report

* Add add_text, validate and read_config_yaml to reportS

* flake8

* Add function to download report contents from AML

* add image gallery type to reports

* Add more tests

* Update report config schema to dictionaries

* Replace dictionary key with var

* fix test

* fix test

* fix test

* fix test
2021-11-22 09:51:53 +00:00
Jonathan Tripp 566739501c
Check other folders for driver_log (#164)
* Check other folders for driver_log
2021-11-18 16:51:38 +00:00
Jonathan Tripp 0e628dfb46
Profile loading png as np (#159)
Profile loading png as np
2021-11-17 19:44:05 +00:00
mebristo f791bede99
Bug fix: update run_config with registered environment (#156)
* Ensure environment is updated after register_environment

* Update test

* Add changelog

* fix changelog
2021-11-15 17:21:12 +00:00
Jonathan Tripp a1e92d1b5e
Profile methods for loading png image files (#132) 2021-11-15 16:47:05 +00:00
mebristo 5b0c7b093e
Add k-fold cross validation wrapper around HyperDrive (#149)
* Started refactor

* Separate out function for retrieving experiment from experiment name

* More refactoring

* refactor cmd line tool args shorter and fewer functions for fetching runs

* update test docstring and fix flake8 error

* Add docs on custom argparsing and custom types, as well as more tests for GenericConfig

* Add more tests

* flake8, mypy, pytest

* Update changelog

* update docs

* Update himl-download

* Update tests

* Address PR comments

* fix pyright issues

* address PR comments

* Update _validate method

* flake8

* fix test

* Add cross-validation with hyperdrive + tests + docs + example

* Add test in AML remote compute

* flake8

* Add function to aggregate metrics from hyperdrive runs

* flake8

* pyright fix

* Address PR comments

* Address PR comments
2021-11-05 12:28:25 +00:00
Jonathan Tripp 27d531b2b2
Locally mount datasets (#145)
* Locally mount or download datasets
2021-11-05 09:24:33 +00:00
Anton Schwaighofer 67066ebe54
Document updated release process (#150) 2021-11-03 12:44:02 +00:00
mebristo e89e7d768b
Mebristo/refactor run id types (#129)
* Started refactor

* Separate out function for retrieving experiment from experiment name

* More refactoring

* refactor cmd line tool args shorter and fewer functions for fetching runs

* update test docstring and fix flake8 error

* Add docs on custom argparsing and custom types, as well as more tests for GenericConfig

* Add more tests

* flake8, mypy, pytest

* Update changelog

* update docs

* Update himl-download

* Update tests

* Address PR comments

* fix pyright issues

* address PR comments

* Update _validate method

* flake8

* fix test
2021-11-01 11:28:46 +00:00
Jonathan Tripp 9da95e1881
Add image load profiling (#138)
Add sample code to profile loading and tiling large images
2021-10-26 14:50:22 +01:00
Anton Schwaighofer 7e00c84daa
Diagnostic tools (#142)
Adding a callback to monitor batch loading times, and a progress bar for AzureML
2021-10-21 15:23:25 +01:00
mebristo 69111971e0
Update changelog and environment version test ready for release (#141)
* Update changelog and environment version test ready for release

* update changelog
2021-10-20 11:10:19 +01:00
mebristo e6e067ee1f
Fix register_environment (#139)
* Fix register_environment

* changelog and mypy
2021-10-20 10:09:21 +01:00
Javier 1cd49695f7
Add pyright and fix issues (#134)
* Fix issues with dev env

* Fix issues with dev env

* Add pyright

* Add pyright

* Fix pyright issues

* Fix pyright issues

* Fix all issues

* Fix all issues

* Change MakeFile

* Fix build

* Fix build

* Fixed test

* Fixed test

* Fix comments

* Fix comments

* Fix comments

* Fix comments

* Add conda back

* Add conda back
2021-10-18 16:54:00 +01:00
Anton Schwaighofer 32a476dcbe
Best Practice Guide for Low Priority VMs (#136) 2021-10-15 14:56:03 +01:00
Anton Schwaighofer b5949faa64
Changes to module names, adding an AzureML Logger (#133)
Packages now create folders "health_ml" and "health_azure", this is a breaking change
2021-10-13 17:08:07 +01:00
Anton Schwaighofer 9e84f5a095
Adding a barrier for downloading in distributed jobs (#128) 2021-10-06 19:07:05 +01:00
Anton Schwaighofer 8aa0ed2620
Bug fix: get_workspace wrongly assumes it runs in AzureML (#127) 2021-10-06 16:18:31 +01:00
mebristo 6612a5810b
Methods for downloading checkpoints, documentation (#123)
* Add test to check downloading large files doesn't time out

* add checkpoint download function

* Add functions to __init__

* Return test file size to large after debugging

* update changelog

* Add test for checkpoint download

* Update test

* Address PR comments

* Add downloading docu

* rename checkpoint download fn

* Address PR comments

* update tests
2021-10-06 15:14:15 +01:00
mebristo 9bf8ea5875
Mebristo/blob storage upload download (#122)
* Add functions to upload and download from blob storage

* Add functions to upload and download from datastores

* Update CHANGELOG

* mypy

* Clarify params and add functions to __init__

* Address PR comments
2021-10-05 10:00:40 +01:00
Anton Schwaighofer 02cbe14475
Preparation for release 0.1.7 (#124) 2021-10-04 15:58:50 +01:00
mebristo f692a79e24
Add function to download Run files without timeout (#113)
* Add function for download_runs (WIP)

* Add function to find file names for a Run

* download runs with single run id

* Stop output files being created during tests

* Add test with local Run

* flake8

* use DEFAULT_WORKSPACE

* move get_workspace into azure_utils to call from get_aml_run

* download_file only for first node if distributed

* Tidy up functions to get AML Run(s)

* dont cover nested functions

* Update himl-tb and himl-download with recent util changes

* Address PR comments

* Replace AML test for download_file
2021-09-30 11:01:18 +01:00
Jonathan Tripp 5ed95e186c
Upload and merge all coverage artifacts (#119)
Upload and merge all coverage artifacts
2021-09-27 09:29:58 +01:00
Anton Schwaighofer 515ba30158
Bug fix: Missing config.json file when providing an AML workspace (#117)
Moving code around for the test suite, to make the hi-ml and hi-ml-azure have a clearly distinct module name, and remove the deep folder hierarchy. Adding init files to the test folders for pytest to pick up files correctly
2021-09-23 17:06:36 +01:00
Jonathan Tripp 3cac37f8b9
Publish two packages (#106)
* Move existing code into hi-ml-azure
* Create new package in hi-ml
* Create top level files
2021-09-22 17:56:35 +01:00
mebristo 46b2d3faf0
Add Tensorboard ability to read from different folders (#112)
* Update run_tensorboard to work with logs in different folders

* fix flake8 complaints

* fix test and changelog

* move types-requests to test_requirements for running mypy

* update test

* move tensorboard example into docs

* shorten command line arg names

* Address PR comments
2021-09-21 15:52:54 +01:00
Anton Schwaighofer 19b081a2f0
Adding changelog (#111)
Adding a changelog, displaying it with the docs, and ensuring it is updated in each PR.
2021-09-16 11:33:45 +01:00