Граф коммитов

11 Коммитов

Автор SHA1 Сообщение Дата
Anton Schwaighofer 681e4281d0
ENH: Improve Amulet support and documentation (#612)
- Move all Amulet-related code to a separate module
- Add bug fix for `RANK` environment to `hi-ml` runner
- Improve documentation and add standalone example script
2022-09-26 15:29:18 +00:00
Anton Schwaighofer d2313f5336
ENH: Add support for model and metadata serialization (#252)
Added tools to write config objects to YAML and read back in
2022-04-09 12:21:10 +02:00
Daniel Coelho de Castro 6934e7357a
STYLE: Fix mypy misconfiguration for histopathology (#294)
* Fix mypy configuration in mypy.ini, settings.json, and Makefiles
* Various fixes for out-of-date API usage
* Move slide loading benchmarks into hi-ml-histopathology/other
2022-04-07 18:44:33 +01:00
Anton Schwaighofer 8735521c08
ENH: Add regression test framework to runner (#289) 2022-04-05 17:21:51 +02:00
Anton Schwaighofer 314433cb95
Adding cross-validation to the hi-ml runner (#198)
* Adding cross-validation
* Simplified model config loading for models in the histopathology folder
* Editor setup for VSCode
* Simplified pytest usage, also from within VSCode
2022-03-07 12:21:09 +00:00
mebristo c5a0348d36
First version of runner (#178)
* First version of runner

* changelog and pyright

* PR comments

* Runs in AML

* More PR comments

* More PR comments

* Remove GenericConfig from himl

* Add more tests

* pytest and pyright

* Add more tests

* Add more tests

* Add documentation

* bug fix align config attributes

* works on config outside of hi-ml

* flake8 mypy pytest

* Add more tests for config loading

* PR comments and add more tests

* Respond to PR comments

* More PR comments

* pytest, mypy, flake8

* fix test running remotely

* debug why test fails on remote build

* debug why test fails on remote build

* debug why test fails on remote build

* fix test

* Fix tests

* debug test failing on azure agent

* Fix test and update docs

* update test

* Update command line tools

* Update coverage report to only read .py files

* debug coverage problem

* debug coverage failing

* debug coverage failing

* debug coverage failing

* PR comments
2022-02-03 09:12:58 +00:00
Anton Schwaighofer c4ad965d23
Enable logging from outside AzureML, logging bugfixes (#167) 2021-11-25 14:16:55 +00:00
Jonathan Tripp a1e92d1b5e
Profile methods for loading png image files (#132) 2021-11-15 16:47:05 +00:00
Anton Schwaighofer 67066ebe54
Document updated release process (#150) 2021-11-03 12:44:02 +00:00
Jonathan Tripp 9da95e1881
Add image load profiling (#138)
Add sample code to profile loading and tiling large images
2021-10-26 14:50:22 +01:00
Javier 1cd49695f7
Add pyright and fix issues (#134)
* Fix issues with dev env

* Fix issues with dev env

* Add pyright

* Add pyright

* Fix pyright issues

* Fix pyright issues

* Fix all issues

* Fix all issues

* Change MakeFile

* Fix build

* Fix build

* Fixed test

* Fixed test

* Fix comments

* Fix comments

* Fix comments

* Fix comments

* Add conda back

* Add conda back
2021-10-18 16:54:00 +01:00