Fix Inconsistent NER Grouping (Pipeline) (#4987)

* Add B I handling to grouping

* Add fix to include separate entity as last token

* move last_idx definition outside loop

* Use first entity in entity group as reference for entity type

* Add test cases

* Take out extra class accidentally added

* Return tf ner grouped test to original

* Take out redundant last entity

* Get last_idx safely

Co-authored-by: ColleterVi <36503688+ColleterVi@users.noreply.github.com>

* Fix first entity comment

* Create separate functions for group_sub_entities and group_entities (splitting call method to testable functions)

* Take out unnecessary last_idx

* Remove additional forward pass test

* Move token classification basic tests to separate class

* Move token classification basic tests back to monocolumninputtestcase

* Move base ner tests to nerpipelinetests

* Take out unused kwargs

* Add back mandatory_keys argument

* Add unitary tests for group_entities in _test_ner_pipeline

* Fix last entity handling

* Fix grouping fucntion used

* Add typing to group_sub_entities and group_entities

Co-authored-by: ColleterVi <36503688+ColleterVi@users.noreply.github.com>

src/transformers/pipelines.py

@@ -1003,8 +1003,6 @@ class TokenClassificationPipeline(Pipeline):
             labels_idx = score.argmax(axis=-1)
 
             entities = []
-            entity_groups = []
-            entity_group_disagg = []
             # Filter to labels not in `self.ignore_labels`
             filtered_labels_idx = [
                 (idx, label_idx)
@@ -1020,37 +1018,13 @@ class TokenClassificationPipeline(Pipeline):
                     "entity": self.model.config.id2label[label_idx],
                     "index": idx,
                 }
-                last_idx, _ = filtered_labels_idx[-1]
-                if self.grouped_entities:
-                    if not entity_group_disagg:
-                        entity_group_disagg += [entity]
-                        if idx == last_idx:
-                            entity_groups += [self.group_entities(entity_group_disagg)]
-                        continue
-
-                    # If the current entity is similar and adjacent to the previous entity, append it to the disaggregated entity group
-                    if (
-                        entity["entity"] == entity_group_disagg[-1]["entity"]
-                        and entity["index"] == entity_group_disagg[-1]["index"] + 1
-                    ):
-                        entity_group_disagg += [entity]
-                        # Group the entities at the last entity
-                        if idx == last_idx:
-                            entity_groups += [self.group_entities(entity_group_disagg)]
-                    # If the current entity is different from the previous entity, aggregate the disaggregated entity group
-                    else:
-                        entity_groups += [self.group_entities(entity_group_disagg)]
-                        entity_group_disagg = [entity]
 
                 entities += [entity]
 
-            # Ensure if an entity is the latest one in the sequence it gets appended to the output
+            # Append grouped entities
-            if len(entity_group_disagg) > 0:
-                entity_groups.append(self.group_entities(entity_group_disagg))
-
-            # Append
             if self.grouped_entities:
-                answers += [entity_groups]
+                answers += [self.group_entities(entities)]
+            # Append ungrouped entities
             else:
                 answers += [entities]
 
@@ -1058,12 +1032,12 @@ class TokenClassificationPipeline(Pipeline):
             return answers[0]
         return answers
 
-    def group_entities(self, entities):
+    def group_sub_entities(self, entities: List[dict]) -> dict:
         """
-        Returns grouped entities
+        Returns grouped sub entities
         """
-        # Get the last entity in the entity group
+        # Get the first entity in the entity group
-        entity = entities[-1]["entity"]
+        entity = entities[0]["entity"]
         scores = np.mean([entity["score"] for entity in entities])
         tokens = [entity["word"] for entity in entities]
 
@@ -1074,6 +1048,45 @@ class TokenClassificationPipeline(Pipeline):
         }
         return entity_group
 
+    def group_entities(self, entities: List[dict]) -> List[dict]:
+        """
+        Returns grouped entities
+        """
+
+        entity_groups = []
+        entity_group_disagg = []
+
+        if entities:
+            last_idx = entities[-1]["index"]
+
+        for entity in entities:
+            is_last_idx = entity["index"] == last_idx
+            if not entity_group_disagg:
+                entity_group_disagg += [entity]
+                if is_last_idx:
+                    entity_groups += [self.group_sub_entities(entity_group_disagg)]
+                continue
+
+            # If the current entity is similar and adjacent to the previous entity, append it to the disaggregated entity group
+            # The split is meant to account for the "B" and "I" suffixes
+            if (
+                entity["entity"].split("-")[-1] == entity_group_disagg[-1]["entity"].split("-")[-1]
+                and entity["index"] == entity_group_disagg[-1]["index"] + 1
+            ):
+                entity_group_disagg += [entity]
+                # Group the entities at the last entity
+                if is_last_idx:
+                    entity_groups += [self.group_sub_entities(entity_group_disagg)]
+            # If the current entity is different from the previous entity, aggregate the disaggregated entity group
+            else:
+                entity_groups += [self.group_sub_entities(entity_group_disagg)]
+                entity_group_disagg = [entity]
+                # If it's the last entity, add it to the entity groups
+                if is_last_idx:
+                    entity_groups += [self.group_sub_entities(entity_group_disagg)]
+
+        return entity_groups
+
 
 NerPipeline = TokenClassificationPipeline
 

tests/test_pipelines.py

@@ -38,6 +38,7 @@ expected_fill_mask_result = [
         {"sequence": "<s>The largest city in France is Lyon</s>", "score": 0.21112334728240967, "token": 12790},
     ],
 ]
+
 SUMMARIZATION_KWARGS = dict(num_beams=2, min_length=2, max_length=5)
 
 
@@ -156,34 +157,6 @@ class MonoColumnInputTestCase(unittest.TestCase):
 
         self.assertRaises(Exception, nlp, invalid_inputs)
 
-    @require_torch
-    def test_torch_ner(self):
-        mandatory_keys = {"entity", "word", "score"}
-        for model_name in NER_FINETUNED_MODELS:
-            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name)
-            self._test_mono_column_pipeline(nlp, VALID_INPUTS, mandatory_keys)
-
-    @require_torch
-    def test_ner_grouped(self):
-        mandatory_keys = {"entity_group", "word", "score"}
-        for model_name in NER_FINETUNED_MODELS:
-            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name, grouped_entities=True)
-            self._test_mono_column_pipeline(nlp, VALID_INPUTS, mandatory_keys)
-
-    @require_tf
-    def test_tf_ner(self):
-        mandatory_keys = {"entity", "word", "score"}
-        for model_name in NER_FINETUNED_MODELS:
-            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name, framework="tf")
-            self._test_mono_column_pipeline(nlp, VALID_INPUTS, mandatory_keys)
-
-    @require_tf
-    def test_tf_ner_grouped(self):
-        mandatory_keys = {"entity_group", "word", "score"}
-        for model_name in NER_FINETUNED_MODELS:
-            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name, framework="tf", grouped_entities=True)
-            self._test_mono_column_pipeline(nlp, VALID_INPUTS, mandatory_keys)
-
     @require_torch
     def test_torch_sentiment_analysis(self):
         mandatory_keys = {"label", "score"}
@@ -393,6 +366,100 @@ class QAPipelineTests(unittest.TestCase):
             self._test_qa_pipeline(nlp)
 
 
+class NerPipelineTests(unittest.TestCase):
+    def _test_ner_pipeline(
+        self, nlp: Pipeline, output_keys: Iterable[str],
+    ):
+
+        ungrouped_ner_inputs = [
+            [
+                {"entity": "B-PER", "index": 1, "score": 0.9994944930076599, "word": "Cons"},
+                {"entity": "B-PER", "index": 2, "score": 0.8025449514389038, "word": "##uelo"},
+                {"entity": "I-PER", "index": 3, "score": 0.9993102550506592, "word": "Ara"},
+                {"entity": "I-PER", "index": 4, "score": 0.9993743896484375, "word": "##új"},
+                {"entity": "I-PER", "index": 5, "score": 0.9992871880531311, "word": "##o"},
+                {"entity": "I-PER", "index": 6, "score": 0.9993029236793518, "word": "No"},
+                {"entity": "I-PER", "index": 7, "score": 0.9981776475906372, "word": "##guera"},
+                {"entity": "B-PER", "index": 15, "score": 0.9998136162757874, "word": "Andrés"},
+                {"entity": "I-PER", "index": 16, "score": 0.999740719795227, "word": "Pas"},
+                {"entity": "I-PER", "index": 17, "score": 0.9997414350509644, "word": "##tran"},
+                {"entity": "I-PER", "index": 18, "score": 0.9996136426925659, "word": "##a"},
+                {"entity": "B-ORG", "index": 28, "score": 0.9989739060401917, "word": "Far"},
+                {"entity": "I-ORG", "index": 29, "score": 0.7188422083854675, "word": "##c"},
+            ],
+            [
+                {"entity": "I-PER", "index": 1, "score": 0.9968166351318359, "word": "En"},
+                {"entity": "I-PER", "index": 2, "score": 0.9957635998725891, "word": "##zo"},
+                {"entity": "I-ORG", "index": 7, "score": 0.9986497163772583, "word": "UN"},
+            ],
+        ]
+        expected_grouped_ner_results = [
+            [
+                {"entity_group": "B-PER", "score": 0.9710702640669686, "word": "Consuelo Araújo Noguera"},
+                {"entity_group": "B-PER", "score": 0.9997273534536362, "word": "Andrés Pastrana"},
+                {"entity_group": "B-ORG", "score": 0.8589080572128296, "word": "Farc"},
+            ],
+            [
+                {"entity_group": "I-PER", "score": 0.9962901175022125, "word": "Enzo"},
+                {"entity_group": "I-ORG", "score": 0.9986497163772583, "word": "UN"},
+            ],
+        ]
+
+        self.assertIsNotNone(nlp)
+
+        mono_result = nlp(VALID_INPUTS[0])
+        self.assertIsInstance(mono_result, list)
+        self.assertIsInstance(mono_result[0], (dict, list))
+
+        if isinstance(mono_result[0], list):
+            mono_result = mono_result[0]
+
+        for key in output_keys:
+            self.assertIn(key, mono_result[0])
+
+        multi_result = [nlp(input) for input in VALID_INPUTS]
+        self.assertIsInstance(multi_result, list)
+        self.assertIsInstance(multi_result[0], (dict, list))
+
+        if isinstance(multi_result[0], list):
+            multi_result = multi_result[0]
+
+        for result in multi_result:
+            for key in output_keys:
+                self.assertIn(key, result)
+
+        for ungrouped_input, grouped_result in zip(ungrouped_ner_inputs, expected_grouped_ner_results):
+            self.assertEqual(nlp.group_entities(ungrouped_input), grouped_result)
+
+    @require_torch
+    def test_torch_ner(self):
+        mandatory_keys = {"entity", "word", "score"}
+        for model_name in NER_FINETUNED_MODELS:
+            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name)
+            self._test_ner_pipeline(nlp, mandatory_keys)
+
+    @require_torch
+    def test_ner_grouped(self):
+        mandatory_keys = {"entity_group", "word", "score"}
+        for model_name in NER_FINETUNED_MODELS:
+            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name, grouped_entities=True)
+            self._test_ner_pipeline(nlp, mandatory_keys)
+
+    @require_tf
+    def test_tf_ner(self):
+        mandatory_keys = {"entity", "word", "score"}
+        for model_name in NER_FINETUNED_MODELS:
+            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name, framework="tf")
+            self._test_ner_pipeline(nlp, mandatory_keys)
+
+    @require_tf
+    def test_tf_ner_grouped(self):
+        mandatory_keys = {"entity_group", "word", "score"}
+        for model_name in NER_FINETUNED_MODELS:
+            nlp = pipeline(task="ner", model=model_name, tokenizer=model_name, framework="tf", grouped_entities=True)
+            self._test_ner_pipeline(nlp, mandatory_keys)
+
+
 class PipelineCommonTests(unittest.TestCase):
 
     pipelines = SUPPORTED_TASKS.keys()