bert-small-cord19 model cards (#4730)
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# BERT-Small CORD-19 fine-tuned on SQuAD 2.0
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[bert-small-cord19 model](https://huggingface.co/NeuML/bert-small-cord19) fine-tuned on SQuAD 2.0
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## Building the model
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```bash
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python run_squad.py
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--model_type bert
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--model_name_or_path bert-small-cord19
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--do_train
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--do_eval
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--do_lower_case
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--version_2_with_negative
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--train_file train-v2.0.json
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--predict_file dev-v2.0.json
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--per_gpu_train_batch_size 8
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--learning_rate 3e-5
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--num_train_epochs 3.0
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--max_seq_length 384
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--doc_stride 128
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--output_dir bert-small-cord19-squad2
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--save_steps 0
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--threads 8
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--overwrite_cache
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--overwrite_output_dir
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# BERT-Small fine-tuned on CORD-19 dataset
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[BERT L6_H-512_A-8 model](https://huggingface.co/google/bert_uncased_L-6_H-512_A-8) fine-tuned on the [CORD-19 dataset](https://www.semanticscholar.org/cord19).
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## CORD-19 data subset
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The training data for this dataset is stored as a [Kaggle dataset](https://www.kaggle.com/davidmezzetti/cord19-qa?select=cord19.txt). The training
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data is a subset of the full corpus, focusing on high-quality, study-design detected articles.
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## Building the model
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```bash
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python run_language_modeling.py
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--model_type bert
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--model_name_or_path google/bert_uncased_L-6_H-512_A-8
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--do_train
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--mlm
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--line_by_line
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--block_size 512
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--train_data_file cord19.txt
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--per_gpu_train_batch_size 4
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--learning_rate 3e-5
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--num_train_epochs 3.0
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--output_dir bert-small-cord19
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--save_steps 0
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--overwrite_output_dir
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# BERT-Small fine-tuned on CORD-19 QA dataset
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[bert-small-cord19-squad model](https://huggingface.co/NeuML/bert-small-cord19-squad2) fine-tuned on the [CORD-19 QA dataset](https://www.kaggle.com/davidmezzetti/cord19-qa?select=cord19-qa.json).
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## CORD-19 QA dataset
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The CORD-19 QA dataset is a SQuAD 2.0 formatted list of question, context, answer combinations covering the [CORD-19 dataset](https://www.semanticscholar.org/cord19).
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## Building the model
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```bash
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python run_squad.py \
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--model_type bert \
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--model_name_or_path bert-small-cord19-squad \
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--do_train \
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--do_lower_case \
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--version_2_with_negative \
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--train_file cord19-qa.json \
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--per_gpu_train_batch_size 8 \
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--learning_rate 5e-5 \
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--num_train_epochs 10.0 \
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--max_seq_length 384 \
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--doc_stride 128 \
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--output_dir bert-small-cord19qa \
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--save_steps 0 \
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--threads 8 \
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--overwrite_cache \
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--overwrite_output_dir
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```
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## Testing the model
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Example usage below:
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```python
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from transformers import pipeline
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qa = pipeline(
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"question-answering",
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model="NeuML/bert-small-cord19qa",
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tokenizer="NeuML/bert-small-cord19qa"
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)
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qa({
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"question": "What is the median incubation period?",
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"context": "The incubation period is around 5 days (range: 4-7 days) with a maximum of 12-13 day"
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})
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qa({
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"question": "What is the incubation period range?",
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"context": "The incubation period is around 5 days (range: 4-7 days) with a maximum of 12-13 day"
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})
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qa({
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"question": "What type of surfaces does it persist?",
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"context": "The virus can survive on surfaces for up to 72 hours such as plastic and stainless steel ."
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})
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```
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```json
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{"score": 0.5970273583242793, "start": 32, "end": 38, "answer": "5 days"}
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{"score": 0.999555868193891, "start": 39, "end": 56, "answer": "(range: 4-7 days)"}
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{"score": 0.9992726505196998, "start": 61, "end": 88, "answer": "plastic and stainless steel"}
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```
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