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__init__.py
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Initial commit.
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2020-05-02 20:09:07 -04:00 |
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aaindex.py
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readding aaindex.py
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2021-03-31 13:59:01 -04:00 |
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collaters.py
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Utilities for loading and using BiGCARP.
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2022-07-15 16:35:17 -04:00 |
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constants.py
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Add utilities for fine-tuning and structure.
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2022-05-18 10:17:20 -04:00 |
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convolutional.py
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Remove hierarchical Bytenet and update Bytenet documentation.
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2021-11-02 15:35:55 -04:00 |
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datasets.py
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Add some simple collaters and datasets.
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2022-07-15 10:04:41 -04:00 |
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esm.py
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set padding and mask ids manually.
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2022-02-16 14:48:22 -05:00 |
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flip_utils.py
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Add utilities for fine-tuning and structure.
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2022-05-18 10:17:20 -04:00 |
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gnn.py
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Add encoder-only option.
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2022-05-18 10:16:57 -04:00 |
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layers.py
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Force types to match.
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2021-08-05 17:08:47 -04:00 |
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losses.py
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Decide whether to unsqueeze the mask in a way that works with 2d inputs.
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2021-02-01 15:15:33 -05:00 |
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metrics.py
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Return 0 and not nan when everything is masked.
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2020-11-25 14:10:21 -05:00 |
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mixup.py
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Write mixup module.
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2022-01-14 21:15:06 -05:00 |
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pdb_utils.py
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Add utilities for fine-tuning and structure.
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2022-05-18 10:17:20 -04:00 |
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pretrained.py
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Add bigcarp zenodo url and freeze weights correctly.
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2022-07-19 11:11:02 -04:00 |
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samplers.py
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Fix bug that was dropping the last batch.
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2021-04-30 14:18:13 -04:00 |
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structure.py
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Fix bug in attention layers.
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2020-11-25 14:11:33 -05:00 |
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trRosetta.py
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Add option for initial number of features.
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2022-03-18 14:11:37 -04:00 |
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trRosetta_utils.py
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Don't import wget unless necessary.
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2022-07-15 16:37:14 -04:00 |
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utils.py
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Make the training log parser do tokens too.
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2021-06-29 11:49:43 -04:00 |
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vae.py
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Allow recurrent decoders.
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2020-06-04 13:38:21 -04:00 |
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