Adding shapely dependency

environment.yml

@@ -13,6 +13,7 @@ dependencies:
   - pytorch-gpu>=1.7
   - rarfile>=3
   - rasterio>=1.0.16
+  - shapely
   - torchvision>=0.3
   - pip:
     - black>=21.4b0

requirements.txt

@@ -52,6 +52,8 @@ scikit-learn>=0.18
 segmentation-models-pytorch>=0.2
 # setuptools 30.4+ required for options.packages.find section in setup.cfg
 setuptools>=30.4
+# shapely is required for manipulating and warping geometries
+shapely
 # sphinx 3+ required for autodoc_typehints = description
 sphinx>=3
 # torch 1.7+ required for typing

setup.cfg

@@ -33,6 +33,7 @@ install_requires =
     pyproj>=3.0
     rasterio>=1.0.16
     rtree>=0.5
+    shapely
     torch>=1.7
     torchvision>=0.3
 python_requires = >= 3.6

spack.yaml

@@ -30,6 +30,7 @@ spack:
   - "py-scikit-learn@0.18:"
   - "py-segmentation-models-pytorch@0.2:"
   - "py-setuptools@30.4:"
+  - "py-shapely"
   - "py-sphinx@3:"
   - "py-torch@1.7:"
   - "py-torchmetrics"