Граф коммитов

1661 Коммитов

Автор SHA1 Сообщение Дата
Nils Lehmann 0547a6563d
Correct the seco weight names (#1593)
* upload correct weight

* fixed again...

* another upload

* Actually test weights are loaded correctly

* Black fixes

* MoCo model was not supposed to have changed

* Semi-strict tests

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-30 10:55:12 -05:00
Adrian Tofting 3532f78383
Feature/refactor vector root to paths (#1597)
* Make RasterDataset accept list of files

* Fix check if str

* Use isdir and isfile

* Rename root to paths and update type hint

* Update children of RasterDataset methods using root

* Fix check to cast str to list

* Update conf files for RasterDatasets

* Add initial suggested test

* Add workaround for lists LandCoverAIBase

* Add method handle_nonlocal_path for users to override

* Raise RuntimeError to support existing tests

* Remove reduntand cast to set

* Remove required os.exists for paths

* Revert "Remove required os.exists for paths"

This reverts commit 84bf62b944326c33d5ba8efdcab615c65b124792.

* Use arg  as potitional argument not kwarg

* Improve comments and logs about arg paths

* Remove misleading comment

* Change type hint of 'paths' to Iterable

* Change type hint of 'paths' to Iterable

* Remove premature handling of non-local paths

* Replace root with paths in docstrings

* Add versionadded to list_files docstring

* Add versionchanged to docstrings

* Update type of paths in childred of Raster

* Replace docstring for paths in all raster

* Swap root with paths for conf files for raster

* Add newline before versionchanged

* Revert name to root in conf for ChesapeakeCVPR

* Simplify EUDEM tests

* paths must be a string if you want autodownload support

* Convert list_files to a property

* Fix type hints

* Test with a real empty directory

* Move property `files` up to GeoDataset

* Rename root to paths for VectorDataset

* Fix mypy

* Fix tests

* Delete duplicate code

* Delete duplicate code

* Fix test coverage

* Document name change

---------

Co-authored-by: Adrian Tofting <adriantofting@mobmob14994.hq.k.grp>
Co-authored-by: Adrian Tofting <adrian@vake.ai>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-29 17:39:04 +00:00
Tarandeep Singh 6ae0d78448
Added functionality for validation split (#1540)
* added functionality for validation split

* Changed "valid" to "val"

* updated docstring & removed redundant lists

* Fixed format with Linters

* Add more testing files

* Simplify regex

* Update datamodule to use new val split

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-29 11:02:19 -05:00
Nils Lehmann 76f92f86df
Add BioMassters Dataset (#1560)
* outline of dataset class

* outline of dataset class

* test data outline

* setup dataset structure

* load bands

* create test data

* test file outline

* fix data reading

* add unit tests

* try to fix failing windows test

* Fix type hints

* Fix Windows tests

* Fix flake8

* adress comments

* remove left over download stuff and comments

* Minor style changes

* Remove unused import

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-29 09:48:16 -05:00
Adrian Tofting 3cef4fb21d
Allow RasterDataset to accept list of files (#1442)
* Make RasterDataset accept list of files

* Fix check if str

* Use isdir and isfile

* Rename root to paths and update type hint

* Update children of RasterDataset methods using root

* Fix check to cast str to list

* Update conf files for RasterDatasets

* Add initial suggested test

* Add workaround for lists LandCoverAIBase

* Add method handle_nonlocal_path for users to override

* Raise RuntimeError to support existing tests

* Remove reduntand cast to set

* Remove required os.exists for paths

* Revert "Remove required os.exists for paths"

This reverts commit 84bf62b944326c33d5ba8efdcab615c65b124792.

* Use arg  as potitional argument not kwarg

* Improve comments and logs about arg paths

* Remove misleading comment

* Change type hint of 'paths' to Iterable

* Change type hint of 'paths' to Iterable

* Remove premature handling of non-local paths

* Replace root with paths in docstrings

* Add versionadded to list_files docstring

* Add versionchanged to docstrings

* Update type of paths in childred of Raster

* Replace docstring for paths in all raster

* Swap root with paths for conf files for raster

* Add newline before versionchanged

* Revert name to root in conf for ChesapeakeCVPR

* Simplify EUDEM tests

* paths must be a string if you want autodownload support

* Convert list_files to a property

* Fix type hints

* Test with a real empty directory

* More diverse tests

* LandCoverAI: don't yet support list of paths

* Black

* isort

---------

Co-authored-by: Adrian Tofting <adriantofting@mobmob14994.hq.k.grp>
Co-authored-by: Adrian Tofting <adrian@vake.ai>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-29 09:28:07 -05:00
Caleb Robinson 51ffb698ee
Add empirical sampling mode to the RCF model (#1339)
* Initial commit

* Fix practically all the problems

* Add docs

* Bruh

* np.typing in quotes because that makes more sense

* make really sure that mosaiks does stuff

* Consolidating RCFs

* Work

* formatting

* coverage

* Update torchgeo/models/rcf.py

* Minor style changes

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-29 08:55:11 -05:00
Burak c51014c656
Add MapInWild dataset (#1131)
* add mapinwild dataset

* add copyright and move the header

* Apply suggestions from code review

accept suggestions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add spaces between sections

* test_black

* test_isort

* test_flake8

* dataset instance and test data

Improves the dataset instance and test data script.

* improvements in test script and dataset class

* update test data

* Update mapinwild.py

* Update mapinwild.py

fix typo

* Update mapinwild.py

* improved test coverage and bug fixes

* improved test coverage

* lazy import pandas

* test coverage for pandas

* test coverage for pandas

* Changes after the review

The changes made after the review.

* delete data

* fix mypy

* fix mypy

* delete residual files

* fix type hinting

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix RtD

* fix RtD

* fix syntax

* fix RtD

* fix file namings

* modality naming fix

* fix hidden method naming

* Update torchgeo/datasets/mapinwild.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* address reviews

* refactoring and testing

- passing test_download with monkeypatch
- refactoring
- addressing most of the comments

* fix mypy

* syntax and type conversion

* Update torchgeo/datasets/mapinwild.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* addressing the comments

* fix mypy plt.Figure not defined

* make the _merge_parts slimmer

* pandas and reviews

* monkeypatch tvt sets

* Simplify MonkeyPatch import

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-29 10:52:08 +00:00
Caleb Robinson b6d78b74c3
Adding the RwandaFieldBoundary dataset (#1574)
* Initial commit

* Add to docs

* Pyupgrade

* Pyupgrade

* Added tests

* who actually cares about lines that are 91 characters long

* Using Figure from matplotlib.figure instead of matplotlib.pyplot to make mypy happy even though they are the same thing

* Documentation updates

* Update docs link

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-29 10:34:51 +00:00
dependabot[bot] 2e01f99655
Bump opencv-python from 4.8.0.76 to 4.8.1.78 in /requirements (#1594)
Bumps [opencv-python](https://github.com/opencv/opencv-python) from 4.8.0.76 to 4.8.1.78.
- [Release notes](https://github.com/opencv/opencv-python/releases)
- [Commits](https://github.com/opencv/opencv-python/commits)

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  dependency-type: direct:production
  update-type: version-update:semver-patch
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2023-09-28 16:22:06 -05:00
dependabot[bot] ce196ee3cf
Bump scipy from 1.11.2 to 1.11.3 in /requirements (#1595)
Bumps [scipy](https://github.com/scipy/scipy) from 1.11.2 to 1.11.3.
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](https://github.com/scipy/scipy/compare/v1.11.2...v1.11.3)

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2023-09-28 16:21:47 -05:00
dependabot[bot] db0a4ac607
Bump lightning[pytorch-extra] from 2.0.9 to 2.0.9.post0 in /requirements (#1596)
Bumps [lightning[pytorch-extra]](https://github.com/Lightning-AI/lightning) from 2.0.9 to 2.0.9.post0.
- [Release notes](https://github.com/Lightning-AI/lightning/releases)
- [Commits](https://github.com/Lightning-AI/lightning/compare/2.0.9...2.0.9.post0)

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  dependency-type: direct:production
  update-type: version-update:semver-patch
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2023-09-28 16:21:28 -05:00
Adam J. Stewart 7e9b63efde
ClassificationTask: add class_weights parameter (#1592)
* ClassificationTask: add class_weights parameter

* black fix
2023-09-28 16:21:02 -05:00
Adam J. Stewart 984e222790
Add command line script (#1559)
* Add command line script

* Label PRs correctly

* Flake8 fix

* Add callbacks

* Update all conf files

* Enforce class of model/data

* Update BYOL tests

* Update all tests

* Use default num workers: 0

* Variable interpolation only supported by omegaconf backend

* Fix regression tests

* Ensure that jsonargparse is installed during testing

* Bump minimimum lightning version

* Workaround for lightning/jsonargparse bugs

* Ignore Python 3.9 warning message

* Add test coverage for __main__.py

* Increase coverage of PixelwiseRegressionTask

* jsonargparse bug fixed in latest release

* Revert "jsonargparse bug fixed in latest release"

This reverts commit 4f38cdfca3.

* Use default logging frequency

* Ensure that metrics are actually logged

* Fix ObjectDetectionTask logging

* Ignore type errors

* Not all need to be ignored
2023-09-27 10:11:52 -07:00
dependabot[bot] 7f00c4dc11
Bump lightly from 1.4.19 to 1.4.20 in /requirements (#1590)
Bumps [lightly](https://github.com/lightly-ai/lightly) from 1.4.19 to 1.4.20.
- [Release notes](https://github.com/lightly-ai/lightly/releases)
- [Commits](https://github.com/lightly-ai/lightly/compare/v1.4.19...v1.4.20)

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- dependency-name: lightly
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2023-09-26 17:11:51 -05:00
dependabot[bot] 8da83147f3
Bump actions/checkout from 4.0.0 to 4.1.0 (#1589)
Bumps [actions/checkout](https://github.com/actions/checkout) from 4.0.0 to 4.1.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v4.0.0...v4.1.0)

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- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2023-09-25 21:23:28 +00:00
dependabot[bot] 87d13faf33
Bump pyupgrade from 3.12.0 to 3.13.0 in /requirements (#1588)
Bumps [pyupgrade](https://github.com/asottile/pyupgrade) from 3.12.0 to 3.13.0.
- [Commits](https://github.com/asottile/pyupgrade/compare/v3.12.0...v3.13.0)

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- dependency-name: pyupgrade
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2023-09-25 15:57:45 -05:00
Adam J. Stewart 3b7ee11c06
Fix trainer support for datasets without a plot method (#1585) 2023-09-25 11:40:53 -05:00
Adam J. Stewart 1b0ca5a5a8
Ensure that none of our minimum version tests are skipped (#1587)
* Ensure that none of our minimum version tests are skipped

* Try pyvista instead

* Try no version

* What is going on

* Try pyvista 0.32.0

* Try pyvista 0.35.0

* Try pyvista 0.35.1

* Try pyvista 0.34.0

* Try pyvista 0.34.2

* Try pyvista 0.34.1

* 0.34.2 is the new min version
2023-09-25 10:51:36 -05:00
Adam J. Stewart 087d8d57e1
CI: pip list even if restoring from cache (#1584) 2023-09-25 08:46:31 -07:00
Adam J. Stewart dbf7a5287f
Promote pandas to a required dependency (#1586)
* Promote pandas to a required dependency

* Update dep files too

* Remove unused imports
2023-09-25 08:09:12 -07:00
Nils Lehmann 242fa909c3
Move SKIPPD to HF and add forecast task (#1548)
* move to hf and adapt tests

* comments

* requested changes

* dim typo

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-24 12:56:54 -05:00
Dominik K b796bbd1d3
adding seasonet dataset + tests + doc (#1466)
* adding seasonet dataset + tests + doc changes

* Fixed docs

* Added tests for missing imports

* Use collections.abc

* Changed some docstrings and comments

* Check parameters using sets

* Changed cmap and interpolation for masks

* Removed requests dependency

* Shortened some lines

* Fixed pandas warning

* Improve documentation of raised error types

---------

Co-authored-by: Viktor Brack <viktor.brack@tu-dortmund.de>
Co-authored-by: Viktor B <39567028+briktor@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-24 14:17:50 +00:00
dependabot[bot] 0086d3df31
Bump torchmetrics from 1.1.2 to 1.2.0 in /requirements (#1583) 2023-09-22 15:47:00 -05:00
dependabot[bot] 5c3e3fd108
Bump pyupgrade from 3.11.1 to 3.12.0 in /requirements (#1582)
Bumps [pyupgrade](https://github.com/asottile/pyupgrade) from 3.11.1 to 3.12.0.
- [Commits](https://github.com/asottile/pyupgrade/compare/v3.11.1...v3.12.0)

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2023-09-21 16:47:24 -05:00
dependabot[bot] ece3fc5649
Bump pandas from 2.1.0 to 2.1.1 in /requirements (#1581)
Bumps [pandas](https://github.com/pandas-dev/pandas) from 2.1.0 to 2.1.1.
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](https://github.com/pandas-dev/pandas/compare/v2.1.0...v2.1.1)

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2023-09-21 16:47:07 -05:00
dependabot[bot] 8dd7c2837f
Bump pyproj from 3.6.0 to 3.6.1 in /requirements (#1580)
Bumps [pyproj](https://github.com/pyproj4/pyproj) from 3.6.0 to 3.6.1.
- [Release notes](https://github.com/pyproj4/pyproj/releases)
- [Changelog](https://github.com/pyproj4/pyproj/blob/main/docs/history.rst)
- [Commits](https://github.com/pyproj4/pyproj/compare/3.6.0...3.6.1)

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2023-09-21 16:46:49 -05:00
Adam J. Stewart 8a842055e1
Remove benchmarking tutorial (#1521)
* Debug failing notebook tests

* Known working nbmake

* Remove buggy tutorial

* Undo version change

* No longer need to rerun tests

* Update tutorials to new syntax
2023-09-21 08:00:34 -05:00
dependabot[bot] 2fbdc85efd
Bump matplotlib from 3.7.3 to 3.8.0 in /requirements (#1566)
* Bump matplotlib from 3.7.3 to 3.8.0 in /requirements

Bumps [matplotlib](https://github.com/matplotlib/matplotlib) from 3.7.3 to 3.8.0.
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](https://github.com/matplotlib/matplotlib/compare/v3.7.3...v3.8.0)

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- dependency-name: matplotlib
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  update-type: version-update:semver-minor
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* Use canonical import location

* Use canonical import location

* Use canonical import location

* More type fixes

* More type fixes

* More type fixes

* More type fixes

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2023-09-21 11:35:57 +00:00
dependabot[bot] f641d075f9
Bump lightly from 1.4.18 to 1.4.19 in /requirements (#1575) 2023-09-20 00:47:20 -05:00
dependabot[bot] 69dfa91925
Bump pyupgrade from 3.11.0 to 3.11.1 in /requirements (#1576) 2023-09-20 00:47:01 -05:00
dependabot[bot] e1f333d715
Bump rarfile from 4.0 to 4.1 in /requirements (#1570)
Bumps [rarfile](https://github.com/markokr/rarfile) from 4.0 to 4.1.
- [Release notes](https://github.com/markokr/rarfile/releases)
- [Changelog](https://github.com/markokr/rarfile/blob/master/doc/news.rst)
- [Commits](https://github.com/markokr/rarfile/compare/v4.0...v4.1)

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2023-09-18 22:07:58 +00:00
dependabot[bot] 2acafd599a
Bump pyupgrade from 3.10.1 to 3.11.0 in /requirements (#1571)
Bumps [pyupgrade](https://github.com/asottile/pyupgrade) from 3.10.1 to 3.11.0.
- [Commits](https://github.com/asottile/pyupgrade/compare/v3.10.1...v3.11.0)

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2023-09-18 16:48:54 -05:00
dependabot[bot] 09d5fd3dc9
Bump numpy from 1.25.2 to 1.26.0 in /requirements (#1572)
Bumps [numpy](https://github.com/numpy/numpy) from 1.25.2 to 1.26.0.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.25.2...v1.26.0)

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2023-09-18 16:48:36 -05:00
dependabot[bot] 97c8f455aa
Bump pyvista from 0.42.1 to 0.42.2 in /requirements (#1573)
Bumps [pyvista](https://github.com/pyvista/pyvista) from 0.42.1 to 0.42.2.
- [Release notes](https://github.com/pyvista/pyvista/releases)
- [Commits](https://github.com/pyvista/pyvista/compare/v0.42.1...v0.42.2)

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2023-09-18 16:48:15 -05:00
dependabot[bot] 6f72f1c6ff
Bump lightning from 2.0.8 to 2.0.9 in /requirements (#1564) 2023-09-18 20:18:30 +00:00
dependabot[bot] 4c53f02433
Bump pillow from 10.0.0 to 10.0.1 in /requirements (#1565) 2023-09-15 17:31:09 -05:00
dependabot[bot] a5246738c3
Bump ipywidgets from 8.1.0 to 8.1.1 in /requirements (#1563)
Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.0 to 8.1.1.
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.0...8.1.1)

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2023-09-14 11:14:44 -05:00
dependabot[bot] e2b06c83b8
Bump matplotlib from 3.7.2 to 3.7.3 in /requirements (#1561) 2023-09-12 17:37:25 -05:00
dependabot[bot] d19b899e73
Bump lightly from 1.4.17 to 1.4.18 in /requirements (#1562) 2023-09-12 17:37:02 -05:00
Adam J. Stewart 578adedc31
Refactor trainers (#1541)
* Refactor trainers

* Update conf files

* Fix pydocstyle

* Add scheduler monitor

* Update conf files

* Fix BYOL backbone

* Remove broken configure_optimizers out type

* Fix type hints

* No casts

* Increase test coverage

* Better documentation of supported models

* Remove unimportant configuration

* Remove unimportant configuration

* Drop model_kwargs

* Docstring improvements

* Add base class for all torchgeo trainers

* Add configure_* methods for losses/metrics/models

* init must come first

* More type hints
2023-09-11 17:05:28 -05:00
Adam J. Stewart 540084061e
Advertise TorchGeo Slack (#1549)
* Advertise TorchGeo Slack

* Add color and logo
2023-09-11 17:05:06 -05:00
dependabot[bot] 94d18b4ad5
Bump torchmetrics from 1.1.1 to 1.1.2 in /requirements (#1558)
Bumps [torchmetrics](https://github.com/Lightning-AI/torchmetrics) from 1.1.1 to 1.1.2.
- [Release notes](https://github.com/Lightning-AI/torchmetrics/releases)
- [Changelog](https://github.com/Lightning-AI/torchmetrics/blob/master/CHANGELOG.md)
- [Commits](https://github.com/Lightning-AI/torchmetrics/compare/v1.1.1...v1.1.2)

---
updated-dependencies:
- dependency-name: torchmetrics
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-11 21:49:24 +00:00
dependabot[bot] d4ea3925f9
Bump black[jupyter] from 23.7.0 to 23.9.1 in /requirements (#1557)
Bumps [black[jupyter]](https://github.com/psf/black) from 23.7.0 to 23.9.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.7.0...23.9.1)

---
updated-dependencies:
- dependency-name: black[jupyter]
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-11 21:49:00 +00:00
dependabot[bot] 64fd6f770c
Bump actions/cache from 3.3.1 to 3.3.2 (#1556)
Bumps [actions/cache](https://github.com/actions/cache) from 3.3.1 to 3.3.2.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v3.3.1...v3.3.2)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-11 15:57:46 -05:00
dependabot[bot] e445ce652f
Bump pyvista from 0.42.0 to 0.42.1 in /requirements (#1552) 2023-09-07 21:15:48 +00:00
dependabot[bot] 6e7326f259
Bump pytest from 7.4.1 to 7.4.2 in /requirements (#1554) 2023-09-07 21:15:38 +00:00
dependabot[bot] da924852e0
Bump setuptools from 68.1.0 to 68.2.0 in /requirements (#1553) 2023-09-07 21:14:21 +00:00
Adam J. Stewart 4d5e07ce37
Add script to plot example predictions (#1534) 2023-09-06 16:05:02 -05:00
Adam J. Stewart 31a2a02039
Move benchmark script to experiments directory (#1542) 2023-09-06 16:04:39 -05:00
Adam J. Stewart 091bbe06d6
Delete conda environment.yml (#1543) 2023-09-06 16:04:21 -05:00