Update R to use library-scripts approach
This commit is contained in:
Chuck Lantz
Родитель
e4feb237ea
Коммит
63c0be61e2
|
|
@ -1,40 +1,18 @@
|
|||
FROM rocker/r-apt:bionic
|
||||
|
||||
# This Dockerfile adds a non-root user with sudo access. Update the “remoteUser” property in
|
||||
# devcontainer.json to use it. More info: https://aka.ms/vscode-remote/containers/non-root-user.
|
||||
# Options for setup script
|
||||
ARG INSTALL_ZSH="true"
|
||||
ARG UPGRADE_PACKAGES="true"
|
||||
ARG USERNAME=docker
|
||||
ARG USER_UID=1000
|
||||
ARG USER_GID=$USER_UID
|
||||
|
||||
# Install needed packages and setup non-root user. Use a separate RUN statement to add your own dependencies.
|
||||
RUN apt-get update \
|
||||
&& export DEBIAN_FRONTEND=noninteractive \
|
||||
&& apt-get -y install --no-install-recommends apt-utils dialog 2>&1 \
|
||||
#
|
||||
# install git iproute2, process tools, lsb-release (common in install instructions for CLIs) and libzip for R Tools extension
|
||||
&& apt-get -y install git openssh-client less iproute2 procps lsb-release libzip-dev \
|
||||
#
|
||||
# Register Microsoft key and feed
|
||||
&& wget -q https://packages.microsoft.com/config/ubuntu/18.04/packages-microsoft-prod.deb \
|
||||
&& dpkg -i packages-microsoft-prod.deb \
|
||||
#
|
||||
# Install the .NET Runtime
|
||||
&& add-apt-repository universe \
|
||||
&& apt-get install apt-transport-https \
|
||||
&& apt-get update \
|
||||
&& apt-get -y install dotnet-runtime-2.1 \
|
||||
#
|
||||
# [Optional] Update a non-root user to match UID/GID - see https://aka.ms/vscode-remote/containers/non-root-user.
|
||||
&& if [ "$USER_GID" != "1000" ]; then groupmod docker --gid $USER_GID; fi \
|
||||
&& if [ "$USER_UID" != "1000" ]; then usermod --uid $USER_UID docker; fi \
|
||||
# [Optional] Add sudo support for the non-root user
|
||||
&& apt-get install -y sudo \
|
||||
&& echo $USERNAME ALL=\(root\) NOPASSWD:ALL > /etc/sudoers.d/docker\
|
||||
&& chmod 0440 /etc/sudoers.d/docker \
|
||||
#
|
||||
# Clean up
|
||||
&& apt-get autoremove -y \
|
||||
&& apt-get clean -y \
|
||||
&& rm -rf /var/lib/apt/lists/*
|
||||
COPY library-scripts/*.sh /tmp/library-scripts/
|
||||
RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
|
||||
&& /bin/bash /tmp/library-scripts/common-debian.sh "${INSTALL_ZSH}" "${USERNAME}" "${USER_UID}" "${USER_GID}" "${UPGRADE_PACKAGES}" \
|
||||
&& apt-get -y install libzip-dev \
|
||||
&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/library-scripts
|
||||
|
||||
# [Optional] Uncomment this section to install additional OS packages.
|
||||
# RUN apt-get update \
|
||||
|
|
|
|||
|
|
@ -1,6 +1,8 @@
|
|||
{
|
||||
"name": "R",
|
||||
"dockerFile": "Dockerfile",
|
||||
"build": {
|
||||
"dockerfile": "Dockerfile",
|
||||
},
|
||||
"runArgs": [ "--cap-add=SYS_PTRACE", "--security-opt", "seccomp=unconfined" ],
|
||||
|
||||
// Set *default* container specific settings.json values on container create.
|
||||
|
|
@ -10,8 +12,7 @@
|
|||
|
||||
// Add the IDs of extensions you want installed when the container is created.
|
||||
"extensions": [
|
||||
"ikuyadeu.r",
|
||||
"mikhail-arkhipov.r"
|
||||
"ikuyadeu.r"
|
||||
]
|
||||
|
||||
// Use 'forwardPorts' to make a list of ports inside the container available locally.
|
||||
|
|
|
|||
|
|
@ -0,0 +1,5 @@
|
|||
# Warning: Folder contents may be replaced
|
||||
|
||||
The contents of this folder will be automatically replaced with a file of the same name in the [vscode-dev-containers](https://github.com/microsoft/vscode-dev-containers) repository's [script-library folder](https://github.com/microsoft/vscode-dev-containers/tree/master/script-library) whenever the repository is packaged.
|
||||
|
||||
To retain your edits, move the file to a different location. You may also delete the files if they are not needed.
|
||||
|
|
@ -0,0 +1,123 @@
|
|||
#!/usr/bin/env bash
|
||||
#-------------------------------------------------------------------------------------------------------------
|
||||
# Copyright (c) Microsoft Corporation. All rights reserved.
|
||||
# Licensed under the MIT License. See https://go.microsoft.com/fwlink/?linkid=2090316 for license information.
|
||||
#-------------------------------------------------------------------------------------------------------------
|
||||
|
||||
# Syntax: ./common-debian.sh <install zsh flag> <username> <user UID> <user GID> <upgrade packages flag>
|
||||
|
||||
set -e
|
||||
|
||||
INSTALL_ZSH=${1:-"true"}
|
||||
USERNAME=${2:-"$(awk -v val=1000 -F ":" '$3==val{print $1}' /etc/passwd)"}
|
||||
USER_UID=${3:-1000}
|
||||
USER_GID=${4:-1000}
|
||||
UPGRADE_PACKAGES=${5:-"true"}
|
||||
|
||||
if [ "$(id -u)" -ne 0 ]; then
|
||||
echo 'Script must be run a root. Use sudo or set "USER root" before running the script.'
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# Treat a user name of "none" as root
|
||||
if [ "${USERNAME}" = "none" ] || [ "${USERNAME}" = "root" ]; then
|
||||
USERNAME=root
|
||||
USER_UID=0
|
||||
USER_GID=0
|
||||
fi
|
||||
|
||||
# Ensure apt is in non-interactive to avoid prompts
|
||||
export DEBIAN_FRONTEND=noninteractive
|
||||
|
||||
# Install apt-utils to avoid debconf warning
|
||||
apt-get -y install --no-install-recommends apt-utils 2> >( grep -v 'debconf: delaying package configuration, since apt-utils is not installed' >&2 )
|
||||
|
||||
# Get to latest versions of all packages
|
||||
if [ "${UPGRADE_PACKAGES}" = "true" ]; then
|
||||
apt-get -y upgrade --no-install-recommends
|
||||
fi
|
||||
|
||||
# Install common developer tools and dependencies
|
||||
apt-get -y install --no-install-recommends \
|
||||
git \
|
||||
openssh-client \
|
||||
less \
|
||||
iproute2 \
|
||||
procps \
|
||||
curl \
|
||||
wget \
|
||||
unzip \
|
||||
nano \
|
||||
jq \
|
||||
lsb-release \
|
||||
ca-certificates \
|
||||
apt-transport-https \
|
||||
dialog \
|
||||
gnupg2 \
|
||||
libc6 \
|
||||
libgcc1 \
|
||||
libgssapi-krb5-2 \
|
||||
libicu[0-9][0-9] \
|
||||
liblttng-ust0 \
|
||||
libstdc++6 \
|
||||
zlib1g \
|
||||
locales
|
||||
|
||||
# Ensure at least the en_US.UTF-8 UTF-8 locale is available.
|
||||
# Common need for both applications and things like the agnoster ZSH theme.
|
||||
echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
|
||||
locale-gen
|
||||
|
||||
# Install libssl1.1 if available
|
||||
if [[ ! -z $(apt-cache --names-only search ^libssl1.1$) ]]; then
|
||||
apt-get -y install --no-install-recommends libssl1.1
|
||||
fi
|
||||
|
||||
# Install appropriate version of libssl1.0.x if available
|
||||
LIBSSL=$(dpkg-query -f '${db:Status-Abbrev}\t${binary:Package}\n' -W 'libssl1\.0\.?' 2>&1 || echo '')
|
||||
if [ "$(echo "$LIBSSL" | grep -o 'libssl1\.0\.[0-9]:' | uniq | sort | wc -l)" -eq 0 ]; then
|
||||
if [[ ! -z $(apt-cache --names-only search ^libssl1.0.2$) ]]; then
|
||||
# Debian 9
|
||||
apt-get -y install --no-install-recommends libssl1.0.2
|
||||
elif [[ ! -z $(apt-cache --names-only search ^libssl1.0.0$) ]]; then
|
||||
# Ubuntu 18.04, 16.04, earlier
|
||||
apt-get -y install --no-install-recommends libssl1.0.0
|
||||
fi
|
||||
fi
|
||||
|
||||
# Create or update a non-root user to match UID/GID - see https://aka.ms/vscode-remote/containers/non-root-user.
|
||||
if id -u $USERNAME > /dev/null 2>&1; then
|
||||
# User exists, update if needed
|
||||
if [ "$USER_GID" != "$(id -G $USERNAME)" ]; then
|
||||
groupmod --gid $USER_GID $USERNAME
|
||||
usermod --gid $USER_GID $USERNAME
|
||||
fi
|
||||
if [ "$USER_UID" != "$(id -u $USERNAME)" ]; then
|
||||
usermod --uid $USER_UID $USERNAME
|
||||
fi
|
||||
else
|
||||
# Create user
|
||||
groupadd --gid $USER_GID $USERNAME
|
||||
useradd -s /bin/bash --uid $USER_UID --gid $USER_GID -m $USERNAME
|
||||
fi
|
||||
|
||||
# Add add sudo support for non-root user
|
||||
apt-get install -y sudo
|
||||
echo $USERNAME ALL=\(root\) NOPASSWD:ALL > /etc/sudoers.d/$USERNAME
|
||||
chmod 0440 /etc/sudoers.d/$USERNAME
|
||||
|
||||
# Ensure ~/.local/bin is in the PATH for root and non-root users for bash. (zsh is later)
|
||||
echo "export PATH=\$PATH:\$HOME/.local/bin" | tee -a /root/.bashrc >> /home/$USERNAME/.bashrc
|
||||
chown $USER_UID:$USER_GID /home/$USERNAME/.bashrc
|
||||
|
||||
# Optionally install and configure zsh
|
||||
if [ "$INSTALL_ZSH" = "true" ] && [ ! -d "/root/.oh-my-zsh" ]; then
|
||||
apt-get install -y zsh
|
||||
sh -c "$(curl -fsSL https://raw.githubusercontent.com/robbyrussell/oh-my-zsh/master/tools/install.sh)"
|
||||
echo "export PATH=\$PATH:\$HOME/.local/bin" >> /root/.zshrc
|
||||
cp -R /root/.oh-my-zsh /home/$USERNAME
|
||||
cp /root/.zshrc /home/$USERNAME
|
||||
sed -i -e "s/\/root\/.oh-my-zsh/\/home\/$USERNAME\/.oh-my-zsh/g" /home/$USERNAME/.zshrc
|
||||
chown -R $USER_UID:$USER_GID /home/$USERNAME/.oh-my-zsh /home/$USERNAME/.zshrc
|
||||
fi
|
||||
|
||||
|
|
@ -1,5 +1,6 @@
|
|||
README.md
|
||||
test-project
|
||||
definition-manifest.json
|
||||
.devcontainer/library-scripts/README.md
|
||||
.vscode
|
||||
.npmignore
|
||||
|
|
|
|||
Загрузка…
Ссылка в новой задаче