From da6a4adbeef912918cabbbb7f8c250015e3ed4e1 Mon Sep 17 00:00:00 2001 From: Chuck Lantz Date: Fri, 29 Oct 2021 20:31:21 -0700 Subject: [PATCH] Update owner of /opt/conda (#1143) --- .../.devcontainer/base.Dockerfile | 39 +- .../library-scripts/common-debian.sh | 482 ------------------ .../definition-manifest.json | 9 +- .../.devcontainer/base.Dockerfile | 50 +- .../library-scripts/common-debian.sh | 482 ------------------ .../python-3-miniconda/.vscode/launch.json | 3 +- .../python-3-miniconda/.vscode/tasks.json | 10 + .../definition-manifest.json | 5 +- .../python-3-miniconda/test-project/hello.py | 2 +- 9 files changed, 77 insertions(+), 1005 deletions(-) delete mode 100755 containers/python-3-anaconda/.devcontainer/library-scripts/common-debian.sh delete mode 100755 containers/python-3-miniconda/.devcontainer/library-scripts/common-debian.sh create mode 100644 containers/python-3-miniconda/.vscode/tasks.json diff --git a/containers/python-3-anaconda/.devcontainer/base.Dockerfile b/containers/python-3-anaconda/.devcontainer/base.Dockerfile index efa5fd0a..8f893bf9 100644 --- a/containers/python-3-anaconda/.devcontainer/base.Dockerfile +++ b/containers/python-3-anaconda/.devcontainer/base.Dockerfile @@ -1,20 +1,37 @@ -FROM continuumio/anaconda3 +FROM continuumio/anaconda3 as upstream + +# Verify OS version is expected one +RUN . /etc/os-release && if [ "${VERSION_CODENAME}" != "bullseye" ]; then exit 1; fi + +# Update, change owner +RUN groupadd -r conda --gid 900 \ + && chown -R :conda /opt/conda \ + && chmod -R g+w /opt/conda \ + && find /opt -type d | xargs -n 1 chmod g+s + +# Reset and copy updated files with updated privs to keep image size down +FROM mcr.microsoft.com/vscode/devcontainers/base:0-bullseye +COPY --from=upstream /opt /opt/ # Copy library scripts to execute -COPY .devcontainer/library-scripts/*.sh .devcontainer/add-notice.sh .devcontainer/library-scripts/*.env /tmp/library-scripts/ +COPY .devcontainer/library-scripts/node-debian.sh .devcontainer/add-notice.sh .devcontainer/library-scripts/*.env /tmp/library-scripts/ -# [Option] Install zsh -ARG INSTALL_ZSH="true" -# [Option] Upgrade OS packages to their latest versions -ARG UPGRADE_PACKAGES="true" -# Install needed packages and setup non-root user. Use a separate RUN statement to add your own dependencies. +# Setup conda to mirror contents from https://github.com/ContinuumIO/docker-images/blob/master/anaconda3/debian/Dockerfile +ENV LANG=C.UTF-8 \ + LC_ALL=C.UTF-8 \ + PATH=/opt/conda/bin:$PATH ARG USERNAME=vscode -ARG USER_UID=1000 -ARG USER_GID=$USER_UID RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \ - && bash /tmp/library-scripts/common-debian.sh "${INSTALL_ZSH}" "${USERNAME}" "${USER_UID}" "${USER_GID}" "${UPGRADE_PACKAGES}" "true" "true" \ + && apt-get install -y --no-install-recommends bzip2 libglib2.0-0 libsm6 libxext6 libxrender1 mercurial subversion \ + && apt-get upgrade -y \ && bash /tmp/library-scripts/add-notice.sh \ - && apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* + && mv -f "/tmp/library-scripts/meta.env" /usr/local/etc/vscode-dev-containers/meta.env \ + && ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh \ + && echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc \ + && echo "conda activate base" >> ~/.bashrc \ + && groupadd -r conda --gid 900 \ + && usermod -aG conda ${USERNAME} \ + && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/library-scripts/add-notice.sh # [Choice] Node.js version: none, lts/*, 16, 14, 12, 10 ARG NODE_VERSION="none" diff --git a/containers/python-3-anaconda/.devcontainer/library-scripts/common-debian.sh b/containers/python-3-anaconda/.devcontainer/library-scripts/common-debian.sh deleted file mode 100755 index f268e51a..00000000 --- a/containers/python-3-anaconda/.devcontainer/library-scripts/common-debian.sh +++ /dev/null @@ -1,482 +0,0 @@ -#!/usr/bin/env bash -#------------------------------------------------------------------------------------------------------------- -# Copyright (c) Microsoft Corporation. All rights reserved. -# Licensed under the MIT License. See https://go.microsoft.com/fwlink/?linkid=2090316 for license information. -#------------------------------------------------------------------------------------------------------------- -# -# Docs: https://github.com/microsoft/vscode-dev-containers/blob/main/script-library/docs/common.md -# Maintainer: The VS Code and Codespaces Teams -# -# Syntax: ./common-debian.sh [install zsh flag] [username] [user UID] [user GID] [upgrade packages flag] [install Oh My Zsh! flag] [Add non-free packages] - -set -e - -INSTALL_ZSH=${1:-"true"} -USERNAME=${2:-"automatic"} -USER_UID=${3:-"automatic"} -USER_GID=${4:-"automatic"} -UPGRADE_PACKAGES=${5:-"true"} -INSTALL_OH_MYS=${6:-"true"} -ADD_NON_FREE_PACKAGES=${7:-"false"} -SCRIPT_DIR="$(cd $(dirname "${BASH_SOURCE[0]}") && pwd)" -MARKER_FILE="/usr/local/etc/vscode-dev-containers/common" - - -if [ "$(id -u)" -ne 0 ]; then - echo -e 'Script must be run as root. Use sudo, su, or add "USER root" to your Dockerfile before running this script.' - exit 1 -fi - -# Ensure that login shells get the correct path if the user updated the PATH using ENV. -rm -f /etc/profile.d/00-restore-env.sh -echo "export PATH=${PATH//$(sh -lc 'echo $PATH')/\$PATH}" > /etc/profile.d/00-restore-env.sh -chmod +x /etc/profile.d/00-restore-env.sh - -# If in automatic mode, determine if a user already exists, if not use vscode -if [ "${USERNAME}" = "auto" ] || [ "${USERNAME}" = "automatic" ]; then - USERNAME="" - POSSIBLE_USERS=("vscode" "node" "codespace" "$(awk -v val=1000 -F ":" '$3==val{print $1}' /etc/passwd)") - for CURRENT_USER in ${POSSIBLE_USERS[@]}; do - if id -u ${CURRENT_USER} > /dev/null 2>&1; then - USERNAME=${CURRENT_USER} - break - fi - done - if [ "${USERNAME}" = "" ]; then - USERNAME=vscode - fi -elif [ "${USERNAME}" = "none" ]; then - USERNAME=root - USER_UID=0 - USER_GID=0 -fi - -# Load markers to see which steps have already run -if [ -f "${MARKER_FILE}" ]; then - echo "Marker file found:" - cat "${MARKER_FILE}" - source "${MARKER_FILE}" -fi - -# Ensure apt is in non-interactive to avoid prompts -export DEBIAN_FRONTEND=noninteractive - -# Function to call apt-get if needed -apt_get_update_if_needed() -{ - if [ ! -d "/var/lib/apt/lists" ] || [ "$(ls /var/lib/apt/lists/ | wc -l)" = "0" ]; then - echo "Running apt-get update..." - apt-get update - else - echo "Skipping apt-get update." - fi -} - -# Run install apt-utils to avoid debconf warning then verify presence of other common developer tools and dependencies -if [ "${PACKAGES_ALREADY_INSTALLED}" != "true" ]; then - - package_list="apt-utils \ - openssh-client \ - gnupg2 \ - dirmngr \ - iproute2 \ - procps \ - lsof \ - htop \ - net-tools \ - psmisc \ - curl \ - wget \ - rsync \ - ca-certificates \ - unzip \ - zip \ - nano \ - vim-tiny \ - less \ - jq \ - lsb-release \ - apt-transport-https \ - dialog \ - libc6 \ - libgcc1 \ - libkrb5-3 \ - libgssapi-krb5-2 \ - libicu[0-9][0-9] \ - liblttng-ust0 \ - libstdc++6 \ - zlib1g \ - locales \ - sudo \ - ncdu \ - man-db \ - strace \ - manpages \ - manpages-dev \ - init-system-helpers" - - # Needed for adding manpages-posix and manpages-posix-dev which are non-free packages in Debian - if [ "${ADD_NON_FREE_PACKAGES}" = "true" ]; then - # Bring in variables from /etc/os-release like VERSION_CODENAME - . /etc/os-release - sed -i -E "s/deb http:\/\/(deb|httpredir)\.debian\.org\/debian ${VERSION_CODENAME} main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME} main contrib non-free/" /etc/apt/sources.list - sed -i -E "s/deb-src http:\/\/(deb|httredir)\.debian\.org\/debian ${VERSION_CODENAME} main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME} main contrib non-free/" /etc/apt/sources.list - sed -i -E "s/deb http:\/\/(deb|httpredir)\.debian\.org\/debian ${VERSION_CODENAME}-updates main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME}-updates main contrib non-free/" /etc/apt/sources.list - sed -i -E "s/deb-src http:\/\/(deb|httpredir)\.debian\.org\/debian ${VERSION_CODENAME}-updates main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME}-updates main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb-src http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main/deb http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb-src http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main/deb http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main contrib non-free/" /etc/apt/sources.list - # Handle bullseye location for security https://www.debian.org/releases/bullseye/amd64/release-notes/ch-information.en.html - sed -i "s/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb-src http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main contrib non-free/" /etc/apt/sources.list - echo "Running apt-get update..." - apt-get update - package_list="${package_list} manpages-posix manpages-posix-dev" - else - apt_get_update_if_needed - fi - - # Install libssl1.1 if available - if [[ ! -z $(apt-cache --names-only search ^libssl1.1$) ]]; then - package_list="${package_list} libssl1.1" - fi - - # Install appropriate version of libssl1.0.x if available - libssl_package=$(dpkg-query -f '${db:Status-Abbrev}\t${binary:Package}\n' -W 'libssl1\.0\.?' 2>&1 || echo '') - if [ "$(echo "$LIlibssl_packageBSSL" | grep -o 'libssl1\.0\.[0-9]:' | uniq | sort | wc -l)" -eq 0 ]; then - if [[ ! -z $(apt-cache --names-only search ^libssl1.0.2$) ]]; then - # Debian 9 - package_list="${package_list} libssl1.0.2" - elif [[ ! -z $(apt-cache --names-only search ^libssl1.0.0$) ]]; then - # Ubuntu 18.04, 16.04, earlier - package_list="${package_list} libssl1.0.0" - fi - fi - - echo "Packages to verify are installed: ${package_list}" - apt-get -y install --no-install-recommends ${package_list} 2> >( grep -v 'debconf: delaying package configuration, since apt-utils is not installed' >&2 ) - - # Install git if not already installed (may be more recent than distro version) - if ! type git > /dev/null 2>&1; then - apt-get -y install --no-install-recommends git - fi - - PACKAGES_ALREADY_INSTALLED="true" -fi - -# Get to latest versions of all packages -if [ "${UPGRADE_PACKAGES}" = "true" ]; then - apt_get_update_if_needed - apt-get -y upgrade --no-install-recommends - apt-get autoremove -y -fi - -# Ensure at least the en_US.UTF-8 UTF-8 locale is available. -# Common need for both applications and things like the agnoster ZSH theme. -if [ "${LOCALE_ALREADY_SET}" != "true" ] && ! grep -o -E '^\s*en_US.UTF-8\s+UTF-8' /etc/locale.gen > /dev/null; then - echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen - locale-gen - LOCALE_ALREADY_SET="true" -fi - -# Create or update a non-root user to match UID/GID. -if id -u ${USERNAME} > /dev/null 2>&1; then - # User exists, update if needed - if [ "${USER_GID}" != "automatic" ] && [ "$USER_GID" != "$(id -G $USERNAME)" ]; then - groupmod --gid $USER_GID $USERNAME - usermod --gid $USER_GID $USERNAME - fi - if [ "${USER_UID}" != "automatic" ] && [ "$USER_UID" != "$(id -u $USERNAME)" ]; then - usermod --uid $USER_UID $USERNAME - fi -else - # Create user - if [ "${USER_GID}" = "automatic" ]; then - groupadd $USERNAME - else - groupadd --gid $USER_GID $USERNAME - fi - if [ "${USER_UID}" = "automatic" ]; then - useradd -s /bin/bash --gid $USERNAME -m $USERNAME - else - useradd -s /bin/bash --uid $USER_UID --gid $USERNAME -m $USERNAME - fi -fi - -# Add add sudo support for non-root user -if [ "${USERNAME}" != "root" ] && [ "${EXISTING_NON_ROOT_USER}" != "${USERNAME}" ]; then - echo $USERNAME ALL=\(root\) NOPASSWD:ALL > /etc/sudoers.d/$USERNAME - chmod 0440 /etc/sudoers.d/$USERNAME - EXISTING_NON_ROOT_USER="${USERNAME}" -fi - -# ** Shell customization section ** -if [ "${USERNAME}" = "root" ]; then - user_rc_path="/root" -else - user_rc_path="/home/${USERNAME}" -fi - -# Restore user .bashrc defaults from skeleton file if it doesn't exist or is empty -if [ ! -f "${user_rc_path}/.bashrc" ] || [ ! -s "${user_rc_path}/.bashrc" ] ; then - cp /etc/skel/.bashrc "${user_rc_path}/.bashrc" -fi - -# Restore user .profile defaults from skeleton file if it doesn't exist or is empty -if [ ! -f "${user_rc_path}/.profile" ] || [ ! -s "${user_rc_path}/.profile" ] ; then - cp /etc/skel/.profile "${user_rc_path}/.profile" -fi - -# .bashrc/.zshrc snippet -rc_snippet="$(cat << 'EOF' - -if [ -z "${USER}" ]; then export USER=$(whoami); fi -if [[ "${PATH}" != *"$HOME/.local/bin"* ]]; then export PATH="${PATH}:$HOME/.local/bin"; fi - -# Display optional first run image specific notice if configured and terminal is interactive -if [ -t 1 ] && [[ "${TERM_PROGRAM}" = "vscode" || "${TERM_PROGRAM}" = "codespaces" ]] && [ ! -f "$HOME/.config/vscode-dev-containers/first-run-notice-already-displayed" ]; then - if [ -f "/usr/local/etc/vscode-dev-containers/first-run-notice.txt" ]; then - cat "/usr/local/etc/vscode-dev-containers/first-run-notice.txt" - elif [ -f "/workspaces/.codespaces/shared/first-run-notice.txt" ]; then - cat "/workspaces/.codespaces/shared/first-run-notice.txt" - fi - mkdir -p "$HOME/.config/vscode-dev-containers" - # Mark first run notice as displayed after 10s to avoid problems with fast terminal refreshes hiding it - ((sleep 10s; touch "$HOME/.config/vscode-dev-containers/first-run-notice-already-displayed") &) -fi - -# Set the default git editor if not already set -if [ -z "$(git config --get core.editor)" ] && [ -z "${GIT_EDITOR}" ]; then - if [ "${TERM_PROGRAM}" = "vscode" ]; then - if [[ -n $(command -v code-insiders) && -z $(command -v code) ]]; then - export GIT_EDITOR="code-insiders --wait" - else - export GIT_EDITOR="code --wait" - fi - fi -fi - -EOF -)" - -# code shim, it fallbacks to code-insiders if code is not available -cat << 'EOF' > /usr/local/bin/code -#!/bin/sh - -get_in_path_except_current() { - which -a "$1" | grep -A1 "$0" | grep -v "$0" -} - -code="$(get_in_path_except_current code)" - -if [ -n "$code" ]; then - exec "$code" "$@" -elif [ "$(command -v code-insiders)" ]; then - exec code-insiders "$@" -else - echo "code or code-insiders is not installed" >&2 - exit 127 -fi -EOF -chmod +x /usr/local/bin/code - -# systemctl shim - tells people to use 'service' if systemd is not running -cat << 'EOF' > /usr/local/bin/systemctl -#!/bin/sh -set -e -if [ -d "/run/systemd/system" ]; then - exec /bin/systemctl/systemctl "$@" -else - echo '\n"systemd" is not running in this container due to its overhead.\nUse the "service" command to start services intead. e.g.: \n\nservice --status-all' -fi -EOF -chmod +x /usr/local/bin/systemctl - -# Codespaces bash and OMZ themes - partly inspired by https://github.com/ohmyzsh/ohmyzsh/blob/master/themes/robbyrussell.zsh-theme -codespaces_bash="$(cat \ -<<'EOF' - -# Codespaces bash prompt theme -__bash_prompt() { - local userpart='`export XIT=$? \ - && [ ! -z "${GITHUB_USER}" ] && echo -n "\[\033[0;32m\]@${GITHUB_USER} " || echo -n "\[\033[0;32m\]\u " \ - && [ "$XIT" -ne "0" ] && echo -n "\[\033[1;31m\]➜" || echo -n "\[\033[0m\]➜"`' - local gitbranch='`\ - export BRANCH=$(git symbolic-ref --short HEAD 2>/dev/null || git rev-parse --short HEAD 2>/dev/null); \ - if [ "${BRANCH}" != "" ]; then \ - echo -n "\[\033[0;36m\](\[\033[1;31m\]${BRANCH}" \ - && if git ls-files --error-unmatch -m --directory --no-empty-directory -o --exclude-standard ":/*" > /dev/null 2>&1; then \ - echo -n " \[\033[1;33m\]✗"; \ - fi \ - && echo -n "\[\033[0;36m\]) "; \ - fi`' - local lightblue='\[\033[1;34m\]' - local removecolor='\[\033[0m\]' - PS1="${userpart} ${lightblue}\w ${gitbranch}${removecolor}\$ " - unset -f __bash_prompt -} -__bash_prompt - -EOF -)" - -codespaces_zsh="$(cat \ -<<'EOF' -# Codespaces zsh prompt theme -__zsh_prompt() { - local prompt_username - if [ ! -z "${GITHUB_USER}" ]; then - prompt_username="@${GITHUB_USER}" - else - prompt_username="%n" - fi - PROMPT="%{$fg[green]%}${prompt_username} %(?:%{$reset_color%}➜ :%{$fg_bold[red]%}➜ )" # User/exit code arrow - PROMPT+='%{$fg_bold[blue]%}%(5~|%-1~/…/%3~|%4~)%{$reset_color%} ' # cwd - PROMPT+='$(git_prompt_info)%{$fg[white]%}$ %{$reset_color%}' # Git status - unset -f __zsh_prompt -} -ZSH_THEME_GIT_PROMPT_PREFIX="%{$fg_bold[cyan]%}(%{$fg_bold[red]%}" -ZSH_THEME_GIT_PROMPT_SUFFIX="%{$reset_color%} " -ZSH_THEME_GIT_PROMPT_DIRTY=" %{$fg_bold[yellow]%}✗%{$fg_bold[cyan]%})" -ZSH_THEME_GIT_PROMPT_CLEAN="%{$fg_bold[cyan]%})" -__zsh_prompt - -EOF -)" - -# Add notice that Oh My Bash! has been removed from images and how to provide information on how to install manually -omb_readme="$(cat \ -<<'EOF' -"Oh My Bash!" has been removed from this image in favor of a simple shell prompt. If you -still wish to use it, remove "~/.oh-my-bash" and install it from: https://github.com/ohmybash/oh-my-bash -You may also want to consider "Bash-it" as an alternative: https://github.com/bash-it/bash-it -See here for infomation on adding it to your image or dotfiles: https://aka.ms/codespaces/omb-remove -EOF -)" -omb_stub="$(cat \ -<<'EOF' -#!/usr/bin/env bash -if [ -t 1 ]; then - cat $HOME/.oh-my-bash/README.md -fi -EOF -)" - -# Add RC snippet and custom bash prompt -if [ "${RC_SNIPPET_ALREADY_ADDED}" != "true" ]; then - echo "${rc_snippet}" >> /etc/bash.bashrc - echo "${codespaces_bash}" >> "${user_rc_path}/.bashrc" - echo 'export PROMPT_DIRTRIM=4' >> "${user_rc_path}/.bashrc" - if [ "${USERNAME}" != "root" ]; then - echo "${codespaces_bash}" >> "/root/.bashrc" - echo 'export PROMPT_DIRTRIM=4' >> "/root/.bashrc" - fi - chown ${USERNAME}:${USERNAME} "${user_rc_path}/.bashrc" - RC_SNIPPET_ALREADY_ADDED="true" -fi - -# Add stub for Oh My Bash! -if [ ! -d "${user_rc_path}/.oh-my-bash}" ] && [ "${INSTALL_OH_MYS}" = "true" ]; then - mkdir -p "${user_rc_path}/.oh-my-bash" "/root/.oh-my-bash" - echo "${omb_readme}" >> "${user_rc_path}/.oh-my-bash/README.md" - echo "${omb_stub}" >> "${user_rc_path}/.oh-my-bash/oh-my-bash.sh" - chmod +x "${user_rc_path}/.oh-my-bash/oh-my-bash.sh" - if [ "${USERNAME}" != "root" ]; then - echo "${omb_readme}" >> "/root/.oh-my-bash/README.md" - echo "${omb_stub}" >> "/root/.oh-my-bash/oh-my-bash.sh" - chmod +x "/root/.oh-my-bash/oh-my-bash.sh" - fi - chown -R "${USERNAME}:${USERNAME}" "${user_rc_path}/.oh-my-bash" -fi - -# Optionally install and configure zsh and Oh My Zsh! -if [ "${INSTALL_ZSH}" = "true" ]; then - if ! type zsh > /dev/null 2>&1; then - apt_get_update_if_needed - apt-get install -y zsh - fi - if [ "${ZSH_ALREADY_INSTALLED}" != "true" ]; then - echo "${rc_snippet}" >> /etc/zsh/zshrc - ZSH_ALREADY_INSTALLED="true" - fi - - # Adapted, simplified inline Oh My Zsh! install steps that adds, defaults to a codespaces theme. - # See https://github.com/ohmyzsh/ohmyzsh/blob/master/tools/install.sh for official script. - oh_my_install_dir="${user_rc_path}/.oh-my-zsh" - if [ ! -d "${oh_my_install_dir}" ] && [ "${INSTALL_OH_MYS}" = "true" ]; then - template_path="${oh_my_install_dir}/templates/zshrc.zsh-template" - user_rc_file="${user_rc_path}/.zshrc" - umask g-w,o-w - mkdir -p ${oh_my_install_dir} - git clone --depth=1 \ - -c core.eol=lf \ - -c core.autocrlf=false \ - -c fsck.zeroPaddedFilemode=ignore \ - -c fetch.fsck.zeroPaddedFilemode=ignore \ - -c receive.fsck.zeroPaddedFilemode=ignore \ - "https://github.com/ohmyzsh/ohmyzsh" "${oh_my_install_dir}" 2>&1 - echo -e "$(cat "${template_path}")\nDISABLE_AUTO_UPDATE=true\nDISABLE_UPDATE_PROMPT=true" > ${user_rc_file} - sed -i -e 's/ZSH_THEME=.*/ZSH_THEME="codespaces"/g' ${user_rc_file} - - mkdir -p ${oh_my_install_dir}/custom/themes - echo "${codespaces_zsh}" > "${oh_my_install_dir}/custom/themes/codespaces.zsh-theme" - # Shrink git while still enabling updates - cd "${oh_my_install_dir}" - git repack -a -d -f --depth=1 --window=1 - # Copy to non-root user if one is specified - if [ "${USERNAME}" != "root" ]; then - cp -rf "${user_rc_file}" "${oh_my_install_dir}" /root - chown -R ${USERNAME}:${USERNAME} "${user_rc_path}" - fi - fi -fi - -# Persist image metadata info, script if meta.env found in same directory -meta_info_script="$(cat << 'EOF' -#!/bin/sh -. /usr/local/etc/vscode-dev-containers/meta.env - -# Minimal output -if [ "$1" = "version" ] || [ "$1" = "image-version" ]; then - echo "${VERSION}" - exit 0 -elif [ "$1" = "release" ]; then - echo "${GIT_REPOSITORY_RELEASE}" - exit 0 -elif [ "$1" = "content" ] || [ "$1" = "content-url" ] || [ "$1" = "contents" ] || [ "$1" = "contents-url" ]; then - echo "${CONTENTS_URL}" - exit 0 -fi - -#Full output -echo -echo "Development container image information" -echo -if [ ! -z "${VERSION}" ]; then echo "- Image version: ${VERSION}"; fi -if [ ! -z "${DEFINITION_ID}" ]; then echo "- Definition ID: ${DEFINITION_ID}"; fi -if [ ! -z "${VARIANT}" ]; then echo "- Variant: ${VARIANT}"; fi -if [ ! -z "${GIT_REPOSITORY}" ]; then echo "- Source code repository: ${GIT_REPOSITORY}"; fi -if [ ! -z "${GIT_REPOSITORY_RELEASE}" ]; then echo "- Source code release/branch: ${GIT_REPOSITORY_RELEASE}"; fi -if [ ! -z "${BUILD_TIMESTAMP}" ]; then echo "- Timestamp: ${BUILD_TIMESTAMP}"; fi -if [ ! -z "${CONTENTS_URL}" ]; then echo && echo "More info: ${CONTENTS_URL}"; fi -echo -EOF -)" -if [ -f "${SCRIPT_DIR}/meta.env" ]; then - mkdir -p /usr/local/etc/vscode-dev-containers/ - cp -f "${SCRIPT_DIR}/meta.env" /usr/local/etc/vscode-dev-containers/meta.env - echo "${meta_info_script}" > /usr/local/bin/devcontainer-info - chmod +x /usr/local/bin/devcontainer-info -fi - -# Write marker file -mkdir -p "$(dirname "${MARKER_FILE}")" -echo -e "\ - PACKAGES_ALREADY_INSTALLED=${PACKAGES_ALREADY_INSTALLED}\n\ - LOCALE_ALREADY_SET=${LOCALE_ALREADY_SET}\n\ - EXISTING_NON_ROOT_USER=${EXISTING_NON_ROOT_USER}\n\ - RC_SNIPPET_ALREADY_ADDED=${RC_SNIPPET_ALREADY_ADDED}\n\ - ZSH_ALREADY_INSTALLED=${ZSH_ALREADY_INSTALLED}" > "${MARKER_FILE}" - -echo "Done!" diff --git a/containers/python-3-anaconda/definition-manifest.json b/containers/python-3-anaconda/definition-manifest.json index d81cd855..104476c6 100644 --- a/containers/python-3-anaconda/definition-manifest.json +++ b/containers/python-3-anaconda/definition-manifest.json @@ -1,5 +1,5 @@ { - "definitionVersion": "0.202.1", + "definitionVersion": "0.202.2", "build": { "latest": true, "rootDistro": "debian", @@ -9,7 +9,7 @@ ] }, "dependencies": { - "image": "anaconda3:latest", + "image": "continuumio/anaconda3:latest", "imageLink": "https://hub.docker.com/r/continuumio/anaconda3", "debian": [{ "cgIgnore": false, @@ -23,6 +23,11 @@ "conda": { "cgIgnore": true, "path": "/opt/conda" + }, + "anaconda": { + "cgIgnore": true, + "path":"/opt/conda", + "versionCommand": "conda list anaconda$ | grep -oP 'anaconda\\s+\\K[^\\s]+'" } }, "languages": { diff --git a/containers/python-3-miniconda/.devcontainer/base.Dockerfile b/containers/python-3-miniconda/.devcontainer/base.Dockerfile index f9f2aebb..cfd3bf6b 100644 --- a/containers/python-3-miniconda/.devcontainer/base.Dockerfile +++ b/containers/python-3-miniconda/.devcontainer/base.Dockerfile @@ -1,27 +1,34 @@ -FROM continuumio/miniconda3 +FROM continuumio/miniconda3 as upstream + +# Update, change owner +RUN groupadd -r conda --gid 900 \ + && chown -R :conda /opt/conda \ + && chmod -R g+w /opt/conda \ + && find /opt -type d | xargs -n 1 chmod g+s + +# Reset and copy updated files with updated privs to keep image size down +FROM mcr.microsoft.com/vscode/devcontainers/base:0-bullseye +COPY --from=upstream /opt /opt/ # Copy library scripts to execute -COPY .devcontainer/library-scripts/*.sh .devcontainer/add-notice.sh .devcontainer/library-scripts/*.env /tmp/library-scripts/ +COPY .devcontainer/library-scripts/node-debian.sh .devcontainer/add-notice.sh .devcontainer/library-scripts/*.env /tmp/library-scripts/ -# [Option] Install zsh -ARG INSTALL_ZSH="true" -# [Option] Upgrade OS packages to their latest versions -ARG UPGRADE_PACKAGES="true" -# Install needed packages and setup non-root user. Use a separate RUN statement to add your own dependencies. +# Setup conda to mirror contents from https://github.com/ContinuumIO/docker-images/blob/master/miniconda3/debian/Dockerfile +ENV LANG=C.UTF-8 \ + LC_ALL=C.UTF-8 \ + PATH=/opt/conda/bin:$PATH ARG USERNAME=vscode -ARG USER_UID=1000 -ARG USER_GID=$USER_UID RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \ - && bash /tmp/library-scripts/common-debian.sh "${INSTALL_ZSH}" "${USERNAME}" "${USER_UID}" "${USER_GID}" "${UPGRADE_PACKAGES}" "true" "true" \ + && apt-get install -y --no-install-recommends bzip2 libglib2.0-0 libsm6 libxext6 libxrender1 mercurial subversion \ + && apt-get upgrade -y \ && bash /tmp/library-scripts/add-notice.sh \ - && apt-get clean -y && rm -rf /var/lib/apt/lists/* - -# Setup default python tools in a venv via pipx to avoid conflicts -ENV PIPX_HOME=/usr/local/py-utils \ - PIPX_BIN_DIR=/usr/local/py-utils/bin -ENV PATH=${PATH}:${PIPX_BIN_DIR} -RUN bash /tmp/library-scripts/python-debian.sh "none" "/opt/conda" "${PIPX_HOME}" "${USERNAME}" "true" \ - && apt-get clean -y && rm -rf /var/lib/apt/lists/* + && mv -f "/tmp/library-scripts/meta.env" /usr/local/etc/vscode-dev-containers/meta.env \ + && ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh \ + && echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc \ + && echo "conda activate base" >> ~/.bashrc \ + && groupadd -r conda --gid 900 \ + && usermod -aG conda ${USERNAME} \ + && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/library-scripts/add-notice.sh # [Choice] Node.js version: none, lts/*, 16, 14, 12, 10 ARG NODE_VERSION="none" @@ -31,7 +38,7 @@ ENV NVM_SYMLINK_CURRENT=true \ RUN bash /tmp/library-scripts/node-debian.sh "${NVM_DIR}" "${NODE_VERSION}" "${USERNAME}" \ && apt-get clean -y && rm -rf /var/lib/apt/lists/* - # Remove library scripts for final image +# Remove library scripts for final image RUN rm -rf /tmp/library-scripts # Copy environment.yml (if found) to a temp locaition so we update the environment. Also @@ -40,11 +47,6 @@ COPY environment.yml* .devcontainer/noop.txt /tmp/conda-tmp/ RUN if [ -f "/tmp/conda-tmp/environment.yml" ]; then umask 0002 && /opt/conda/bin/conda env update -n base -f /tmp/conda-tmp/environment.yml; fi \ && rm -rf /tmp/conda-tmp -# [Optional] Uncomment to install a different version of Python than the default -# RUN umask 0002 && conda install -y python=3.6 - # [Optional] Uncomment this section to install additional OS packages. # RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \ # && apt-get -y install --no-install-recommends - - diff --git a/containers/python-3-miniconda/.devcontainer/library-scripts/common-debian.sh b/containers/python-3-miniconda/.devcontainer/library-scripts/common-debian.sh deleted file mode 100755 index f268e51a..00000000 --- a/containers/python-3-miniconda/.devcontainer/library-scripts/common-debian.sh +++ /dev/null @@ -1,482 +0,0 @@ -#!/usr/bin/env bash -#------------------------------------------------------------------------------------------------------------- -# Copyright (c) Microsoft Corporation. All rights reserved. -# Licensed under the MIT License. See https://go.microsoft.com/fwlink/?linkid=2090316 for license information. -#------------------------------------------------------------------------------------------------------------- -# -# Docs: https://github.com/microsoft/vscode-dev-containers/blob/main/script-library/docs/common.md -# Maintainer: The VS Code and Codespaces Teams -# -# Syntax: ./common-debian.sh [install zsh flag] [username] [user UID] [user GID] [upgrade packages flag] [install Oh My Zsh! flag] [Add non-free packages] - -set -e - -INSTALL_ZSH=${1:-"true"} -USERNAME=${2:-"automatic"} -USER_UID=${3:-"automatic"} -USER_GID=${4:-"automatic"} -UPGRADE_PACKAGES=${5:-"true"} -INSTALL_OH_MYS=${6:-"true"} -ADD_NON_FREE_PACKAGES=${7:-"false"} -SCRIPT_DIR="$(cd $(dirname "${BASH_SOURCE[0]}") && pwd)" -MARKER_FILE="/usr/local/etc/vscode-dev-containers/common" - - -if [ "$(id -u)" -ne 0 ]; then - echo -e 'Script must be run as root. Use sudo, su, or add "USER root" to your Dockerfile before running this script.' - exit 1 -fi - -# Ensure that login shells get the correct path if the user updated the PATH using ENV. -rm -f /etc/profile.d/00-restore-env.sh -echo "export PATH=${PATH//$(sh -lc 'echo $PATH')/\$PATH}" > /etc/profile.d/00-restore-env.sh -chmod +x /etc/profile.d/00-restore-env.sh - -# If in automatic mode, determine if a user already exists, if not use vscode -if [ "${USERNAME}" = "auto" ] || [ "${USERNAME}" = "automatic" ]; then - USERNAME="" - POSSIBLE_USERS=("vscode" "node" "codespace" "$(awk -v val=1000 -F ":" '$3==val{print $1}' /etc/passwd)") - for CURRENT_USER in ${POSSIBLE_USERS[@]}; do - if id -u ${CURRENT_USER} > /dev/null 2>&1; then - USERNAME=${CURRENT_USER} - break - fi - done - if [ "${USERNAME}" = "" ]; then - USERNAME=vscode - fi -elif [ "${USERNAME}" = "none" ]; then - USERNAME=root - USER_UID=0 - USER_GID=0 -fi - -# Load markers to see which steps have already run -if [ -f "${MARKER_FILE}" ]; then - echo "Marker file found:" - cat "${MARKER_FILE}" - source "${MARKER_FILE}" -fi - -# Ensure apt is in non-interactive to avoid prompts -export DEBIAN_FRONTEND=noninteractive - -# Function to call apt-get if needed -apt_get_update_if_needed() -{ - if [ ! -d "/var/lib/apt/lists" ] || [ "$(ls /var/lib/apt/lists/ | wc -l)" = "0" ]; then - echo "Running apt-get update..." - apt-get update - else - echo "Skipping apt-get update." - fi -} - -# Run install apt-utils to avoid debconf warning then verify presence of other common developer tools and dependencies -if [ "${PACKAGES_ALREADY_INSTALLED}" != "true" ]; then - - package_list="apt-utils \ - openssh-client \ - gnupg2 \ - dirmngr \ - iproute2 \ - procps \ - lsof \ - htop \ - net-tools \ - psmisc \ - curl \ - wget \ - rsync \ - ca-certificates \ - unzip \ - zip \ - nano \ - vim-tiny \ - less \ - jq \ - lsb-release \ - apt-transport-https \ - dialog \ - libc6 \ - libgcc1 \ - libkrb5-3 \ - libgssapi-krb5-2 \ - libicu[0-9][0-9] \ - liblttng-ust0 \ - libstdc++6 \ - zlib1g \ - locales \ - sudo \ - ncdu \ - man-db \ - strace \ - manpages \ - manpages-dev \ - init-system-helpers" - - # Needed for adding manpages-posix and manpages-posix-dev which are non-free packages in Debian - if [ "${ADD_NON_FREE_PACKAGES}" = "true" ]; then - # Bring in variables from /etc/os-release like VERSION_CODENAME - . /etc/os-release - sed -i -E "s/deb http:\/\/(deb|httpredir)\.debian\.org\/debian ${VERSION_CODENAME} main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME} main contrib non-free/" /etc/apt/sources.list - sed -i -E "s/deb-src http:\/\/(deb|httredir)\.debian\.org\/debian ${VERSION_CODENAME} main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME} main contrib non-free/" /etc/apt/sources.list - sed -i -E "s/deb http:\/\/(deb|httpredir)\.debian\.org\/debian ${VERSION_CODENAME}-updates main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME}-updates main contrib non-free/" /etc/apt/sources.list - sed -i -E "s/deb-src http:\/\/(deb|httpredir)\.debian\.org\/debian ${VERSION_CODENAME}-updates main/deb http:\/\/\1\.debian\.org\/debian ${VERSION_CODENAME}-updates main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb-src http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}\/updates main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main/deb http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb-src http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main/deb http:\/\/deb\.debian\.org\/debian ${VERSION_CODENAME}-backports main contrib non-free/" /etc/apt/sources.list - # Handle bullseye location for security https://www.debian.org/releases/bullseye/amd64/release-notes/ch-information.en.html - sed -i "s/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main contrib non-free/" /etc/apt/sources.list - sed -i "s/deb-src http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main/deb http:\/\/security\.debian\.org\/debian-security ${VERSION_CODENAME}-security main contrib non-free/" /etc/apt/sources.list - echo "Running apt-get update..." - apt-get update - package_list="${package_list} manpages-posix manpages-posix-dev" - else - apt_get_update_if_needed - fi - - # Install libssl1.1 if available - if [[ ! -z $(apt-cache --names-only search ^libssl1.1$) ]]; then - package_list="${package_list} libssl1.1" - fi - - # Install appropriate version of libssl1.0.x if available - libssl_package=$(dpkg-query -f '${db:Status-Abbrev}\t${binary:Package}\n' -W 'libssl1\.0\.?' 2>&1 || echo '') - if [ "$(echo "$LIlibssl_packageBSSL" | grep -o 'libssl1\.0\.[0-9]:' | uniq | sort | wc -l)" -eq 0 ]; then - if [[ ! -z $(apt-cache --names-only search ^libssl1.0.2$) ]]; then - # Debian 9 - package_list="${package_list} libssl1.0.2" - elif [[ ! -z $(apt-cache --names-only search ^libssl1.0.0$) ]]; then - # Ubuntu 18.04, 16.04, earlier - package_list="${package_list} libssl1.0.0" - fi - fi - - echo "Packages to verify are installed: ${package_list}" - apt-get -y install --no-install-recommends ${package_list} 2> >( grep -v 'debconf: delaying package configuration, since apt-utils is not installed' >&2 ) - - # Install git if not already installed (may be more recent than distro version) - if ! type git > /dev/null 2>&1; then - apt-get -y install --no-install-recommends git - fi - - PACKAGES_ALREADY_INSTALLED="true" -fi - -# Get to latest versions of all packages -if [ "${UPGRADE_PACKAGES}" = "true" ]; then - apt_get_update_if_needed - apt-get -y upgrade --no-install-recommends - apt-get autoremove -y -fi - -# Ensure at least the en_US.UTF-8 UTF-8 locale is available. -# Common need for both applications and things like the agnoster ZSH theme. -if [ "${LOCALE_ALREADY_SET}" != "true" ] && ! grep -o -E '^\s*en_US.UTF-8\s+UTF-8' /etc/locale.gen > /dev/null; then - echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen - locale-gen - LOCALE_ALREADY_SET="true" -fi - -# Create or update a non-root user to match UID/GID. -if id -u ${USERNAME} > /dev/null 2>&1; then - # User exists, update if needed - if [ "${USER_GID}" != "automatic" ] && [ "$USER_GID" != "$(id -G $USERNAME)" ]; then - groupmod --gid $USER_GID $USERNAME - usermod --gid $USER_GID $USERNAME - fi - if [ "${USER_UID}" != "automatic" ] && [ "$USER_UID" != "$(id -u $USERNAME)" ]; then - usermod --uid $USER_UID $USERNAME - fi -else - # Create user - if [ "${USER_GID}" = "automatic" ]; then - groupadd $USERNAME - else - groupadd --gid $USER_GID $USERNAME - fi - if [ "${USER_UID}" = "automatic" ]; then - useradd -s /bin/bash --gid $USERNAME -m $USERNAME - else - useradd -s /bin/bash --uid $USER_UID --gid $USERNAME -m $USERNAME - fi -fi - -# Add add sudo support for non-root user -if [ "${USERNAME}" != "root" ] && [ "${EXISTING_NON_ROOT_USER}" != "${USERNAME}" ]; then - echo $USERNAME ALL=\(root\) NOPASSWD:ALL > /etc/sudoers.d/$USERNAME - chmod 0440 /etc/sudoers.d/$USERNAME - EXISTING_NON_ROOT_USER="${USERNAME}" -fi - -# ** Shell customization section ** -if [ "${USERNAME}" = "root" ]; then - user_rc_path="/root" -else - user_rc_path="/home/${USERNAME}" -fi - -# Restore user .bashrc defaults from skeleton file if it doesn't exist or is empty -if [ ! -f "${user_rc_path}/.bashrc" ] || [ ! -s "${user_rc_path}/.bashrc" ] ; then - cp /etc/skel/.bashrc "${user_rc_path}/.bashrc" -fi - -# Restore user .profile defaults from skeleton file if it doesn't exist or is empty -if [ ! -f "${user_rc_path}/.profile" ] || [ ! -s "${user_rc_path}/.profile" ] ; then - cp /etc/skel/.profile "${user_rc_path}/.profile" -fi - -# .bashrc/.zshrc snippet -rc_snippet="$(cat << 'EOF' - -if [ -z "${USER}" ]; then export USER=$(whoami); fi -if [[ "${PATH}" != *"$HOME/.local/bin"* ]]; then export PATH="${PATH}:$HOME/.local/bin"; fi - -# Display optional first run image specific notice if configured and terminal is interactive -if [ -t 1 ] && [[ "${TERM_PROGRAM}" = "vscode" || "${TERM_PROGRAM}" = "codespaces" ]] && [ ! -f "$HOME/.config/vscode-dev-containers/first-run-notice-already-displayed" ]; then - if [ -f "/usr/local/etc/vscode-dev-containers/first-run-notice.txt" ]; then - cat "/usr/local/etc/vscode-dev-containers/first-run-notice.txt" - elif [ -f "/workspaces/.codespaces/shared/first-run-notice.txt" ]; then - cat "/workspaces/.codespaces/shared/first-run-notice.txt" - fi - mkdir -p "$HOME/.config/vscode-dev-containers" - # Mark first run notice as displayed after 10s to avoid problems with fast terminal refreshes hiding it - ((sleep 10s; touch "$HOME/.config/vscode-dev-containers/first-run-notice-already-displayed") &) -fi - -# Set the default git editor if not already set -if [ -z "$(git config --get core.editor)" ] && [ -z "${GIT_EDITOR}" ]; then - if [ "${TERM_PROGRAM}" = "vscode" ]; then - if [[ -n $(command -v code-insiders) && -z $(command -v code) ]]; then - export GIT_EDITOR="code-insiders --wait" - else - export GIT_EDITOR="code --wait" - fi - fi -fi - -EOF -)" - -# code shim, it fallbacks to code-insiders if code is not available -cat << 'EOF' > /usr/local/bin/code -#!/bin/sh - -get_in_path_except_current() { - which -a "$1" | grep -A1 "$0" | grep -v "$0" -} - -code="$(get_in_path_except_current code)" - -if [ -n "$code" ]; then - exec "$code" "$@" -elif [ "$(command -v code-insiders)" ]; then - exec code-insiders "$@" -else - echo "code or code-insiders is not installed" >&2 - exit 127 -fi -EOF -chmod +x /usr/local/bin/code - -# systemctl shim - tells people to use 'service' if systemd is not running -cat << 'EOF' > /usr/local/bin/systemctl -#!/bin/sh -set -e -if [ -d "/run/systemd/system" ]; then - exec /bin/systemctl/systemctl "$@" -else - echo '\n"systemd" is not running in this container due to its overhead.\nUse the "service" command to start services intead. e.g.: \n\nservice --status-all' -fi -EOF -chmod +x /usr/local/bin/systemctl - -# Codespaces bash and OMZ themes - partly inspired by https://github.com/ohmyzsh/ohmyzsh/blob/master/themes/robbyrussell.zsh-theme -codespaces_bash="$(cat \ -<<'EOF' - -# Codespaces bash prompt theme -__bash_prompt() { - local userpart='`export XIT=$? \ - && [ ! -z "${GITHUB_USER}" ] && echo -n "\[\033[0;32m\]@${GITHUB_USER} " || echo -n "\[\033[0;32m\]\u " \ - && [ "$XIT" -ne "0" ] && echo -n "\[\033[1;31m\]➜" || echo -n "\[\033[0m\]➜"`' - local gitbranch='`\ - export BRANCH=$(git symbolic-ref --short HEAD 2>/dev/null || git rev-parse --short HEAD 2>/dev/null); \ - if [ "${BRANCH}" != "" ]; then \ - echo -n "\[\033[0;36m\](\[\033[1;31m\]${BRANCH}" \ - && if git ls-files --error-unmatch -m --directory --no-empty-directory -o --exclude-standard ":/*" > /dev/null 2>&1; then \ - echo -n " \[\033[1;33m\]✗"; \ - fi \ - && echo -n "\[\033[0;36m\]) "; \ - fi`' - local lightblue='\[\033[1;34m\]' - local removecolor='\[\033[0m\]' - PS1="${userpart} ${lightblue}\w ${gitbranch}${removecolor}\$ " - unset -f __bash_prompt -} -__bash_prompt - -EOF -)" - -codespaces_zsh="$(cat \ -<<'EOF' -# Codespaces zsh prompt theme -__zsh_prompt() { - local prompt_username - if [ ! -z "${GITHUB_USER}" ]; then - prompt_username="@${GITHUB_USER}" - else - prompt_username="%n" - fi - PROMPT="%{$fg[green]%}${prompt_username} %(?:%{$reset_color%}➜ :%{$fg_bold[red]%}➜ )" # User/exit code arrow - PROMPT+='%{$fg_bold[blue]%}%(5~|%-1~/…/%3~|%4~)%{$reset_color%} ' # cwd - PROMPT+='$(git_prompt_info)%{$fg[white]%}$ %{$reset_color%}' # Git status - unset -f __zsh_prompt -} -ZSH_THEME_GIT_PROMPT_PREFIX="%{$fg_bold[cyan]%}(%{$fg_bold[red]%}" -ZSH_THEME_GIT_PROMPT_SUFFIX="%{$reset_color%} " -ZSH_THEME_GIT_PROMPT_DIRTY=" %{$fg_bold[yellow]%}✗%{$fg_bold[cyan]%})" -ZSH_THEME_GIT_PROMPT_CLEAN="%{$fg_bold[cyan]%})" -__zsh_prompt - -EOF -)" - -# Add notice that Oh My Bash! has been removed from images and how to provide information on how to install manually -omb_readme="$(cat \ -<<'EOF' -"Oh My Bash!" has been removed from this image in favor of a simple shell prompt. If you -still wish to use it, remove "~/.oh-my-bash" and install it from: https://github.com/ohmybash/oh-my-bash -You may also want to consider "Bash-it" as an alternative: https://github.com/bash-it/bash-it -See here for infomation on adding it to your image or dotfiles: https://aka.ms/codespaces/omb-remove -EOF -)" -omb_stub="$(cat \ -<<'EOF' -#!/usr/bin/env bash -if [ -t 1 ]; then - cat $HOME/.oh-my-bash/README.md -fi -EOF -)" - -# Add RC snippet and custom bash prompt -if [ "${RC_SNIPPET_ALREADY_ADDED}" != "true" ]; then - echo "${rc_snippet}" >> /etc/bash.bashrc - echo "${codespaces_bash}" >> "${user_rc_path}/.bashrc" - echo 'export PROMPT_DIRTRIM=4' >> "${user_rc_path}/.bashrc" - if [ "${USERNAME}" != "root" ]; then - echo "${codespaces_bash}" >> "/root/.bashrc" - echo 'export PROMPT_DIRTRIM=4' >> "/root/.bashrc" - fi - chown ${USERNAME}:${USERNAME} "${user_rc_path}/.bashrc" - RC_SNIPPET_ALREADY_ADDED="true" -fi - -# Add stub for Oh My Bash! -if [ ! -d "${user_rc_path}/.oh-my-bash}" ] && [ "${INSTALL_OH_MYS}" = "true" ]; then - mkdir -p "${user_rc_path}/.oh-my-bash" "/root/.oh-my-bash" - echo "${omb_readme}" >> "${user_rc_path}/.oh-my-bash/README.md" - echo "${omb_stub}" >> "${user_rc_path}/.oh-my-bash/oh-my-bash.sh" - chmod +x "${user_rc_path}/.oh-my-bash/oh-my-bash.sh" - if [ "${USERNAME}" != "root" ]; then - echo "${omb_readme}" >> "/root/.oh-my-bash/README.md" - echo "${omb_stub}" >> "/root/.oh-my-bash/oh-my-bash.sh" - chmod +x "/root/.oh-my-bash/oh-my-bash.sh" - fi - chown -R "${USERNAME}:${USERNAME}" "${user_rc_path}/.oh-my-bash" -fi - -# Optionally install and configure zsh and Oh My Zsh! -if [ "${INSTALL_ZSH}" = "true" ]; then - if ! type zsh > /dev/null 2>&1; then - apt_get_update_if_needed - apt-get install -y zsh - fi - if [ "${ZSH_ALREADY_INSTALLED}" != "true" ]; then - echo "${rc_snippet}" >> /etc/zsh/zshrc - ZSH_ALREADY_INSTALLED="true" - fi - - # Adapted, simplified inline Oh My Zsh! install steps that adds, defaults to a codespaces theme. - # See https://github.com/ohmyzsh/ohmyzsh/blob/master/tools/install.sh for official script. - oh_my_install_dir="${user_rc_path}/.oh-my-zsh" - if [ ! -d "${oh_my_install_dir}" ] && [ "${INSTALL_OH_MYS}" = "true" ]; then - template_path="${oh_my_install_dir}/templates/zshrc.zsh-template" - user_rc_file="${user_rc_path}/.zshrc" - umask g-w,o-w - mkdir -p ${oh_my_install_dir} - git clone --depth=1 \ - -c core.eol=lf \ - -c core.autocrlf=false \ - -c fsck.zeroPaddedFilemode=ignore \ - -c fetch.fsck.zeroPaddedFilemode=ignore \ - -c receive.fsck.zeroPaddedFilemode=ignore \ - "https://github.com/ohmyzsh/ohmyzsh" "${oh_my_install_dir}" 2>&1 - echo -e "$(cat "${template_path}")\nDISABLE_AUTO_UPDATE=true\nDISABLE_UPDATE_PROMPT=true" > ${user_rc_file} - sed -i -e 's/ZSH_THEME=.*/ZSH_THEME="codespaces"/g' ${user_rc_file} - - mkdir -p ${oh_my_install_dir}/custom/themes - echo "${codespaces_zsh}" > "${oh_my_install_dir}/custom/themes/codespaces.zsh-theme" - # Shrink git while still enabling updates - cd "${oh_my_install_dir}" - git repack -a -d -f --depth=1 --window=1 - # Copy to non-root user if one is specified - if [ "${USERNAME}" != "root" ]; then - cp -rf "${user_rc_file}" "${oh_my_install_dir}" /root - chown -R ${USERNAME}:${USERNAME} "${user_rc_path}" - fi - fi -fi - -# Persist image metadata info, script if meta.env found in same directory -meta_info_script="$(cat << 'EOF' -#!/bin/sh -. /usr/local/etc/vscode-dev-containers/meta.env - -# Minimal output -if [ "$1" = "version" ] || [ "$1" = "image-version" ]; then - echo "${VERSION}" - exit 0 -elif [ "$1" = "release" ]; then - echo "${GIT_REPOSITORY_RELEASE}" - exit 0 -elif [ "$1" = "content" ] || [ "$1" = "content-url" ] || [ "$1" = "contents" ] || [ "$1" = "contents-url" ]; then - echo "${CONTENTS_URL}" - exit 0 -fi - -#Full output -echo -echo "Development container image information" -echo -if [ ! -z "${VERSION}" ]; then echo "- Image version: ${VERSION}"; fi -if [ ! -z "${DEFINITION_ID}" ]; then echo "- Definition ID: ${DEFINITION_ID}"; fi -if [ ! -z "${VARIANT}" ]; then echo "- Variant: ${VARIANT}"; fi -if [ ! -z "${GIT_REPOSITORY}" ]; then echo "- Source code repository: ${GIT_REPOSITORY}"; fi -if [ ! -z "${GIT_REPOSITORY_RELEASE}" ]; then echo "- Source code release/branch: ${GIT_REPOSITORY_RELEASE}"; fi -if [ ! -z "${BUILD_TIMESTAMP}" ]; then echo "- Timestamp: ${BUILD_TIMESTAMP}"; fi -if [ ! -z "${CONTENTS_URL}" ]; then echo && echo "More info: ${CONTENTS_URL}"; fi -echo -EOF -)" -if [ -f "${SCRIPT_DIR}/meta.env" ]; then - mkdir -p /usr/local/etc/vscode-dev-containers/ - cp -f "${SCRIPT_DIR}/meta.env" /usr/local/etc/vscode-dev-containers/meta.env - echo "${meta_info_script}" > /usr/local/bin/devcontainer-info - chmod +x /usr/local/bin/devcontainer-info -fi - -# Write marker file -mkdir -p "$(dirname "${MARKER_FILE}")" -echo -e "\ - PACKAGES_ALREADY_INSTALLED=${PACKAGES_ALREADY_INSTALLED}\n\ - LOCALE_ALREADY_SET=${LOCALE_ALREADY_SET}\n\ - EXISTING_NON_ROOT_USER=${EXISTING_NON_ROOT_USER}\n\ - RC_SNIPPET_ALREADY_ADDED=${RC_SNIPPET_ALREADY_ADDED}\n\ - ZSH_ALREADY_INSTALLED=${ZSH_ALREADY_INSTALLED}" > "${MARKER_FILE}" - -echo "Done!" diff --git a/containers/python-3-miniconda/.vscode/launch.json b/containers/python-3-miniconda/.vscode/launch.json index a89c2912..86c410e3 100644 --- a/containers/python-3-miniconda/.vscode/launch.json +++ b/containers/python-3-miniconda/.vscode/launch.json @@ -10,7 +10,8 @@ "request": "launch", "program": "${workspaceFolder}/test-project/hello.py", "cwd":"${workspaceFolder}/test-project", - "console": "integratedTerminal" + "console": "integratedTerminal", + "preLaunchTask": "environment-install" } ] } \ No newline at end of file diff --git a/containers/python-3-miniconda/.vscode/tasks.json b/containers/python-3-miniconda/.vscode/tasks.json new file mode 100644 index 00000000..3759abc4 --- /dev/null +++ b/containers/python-3-miniconda/.vscode/tasks.json @@ -0,0 +1,10 @@ +{ + "version": "2.0.0", + "tasks": [ + { + "label": "environment-install", + "type": "shell", + "command": "umask 0002 && /opt/conda/bin/conda env update -n base -f ${workspaceFolder}/test-project/environment.yml" + } + ] +} \ No newline at end of file diff --git a/containers/python-3-miniconda/definition-manifest.json b/containers/python-3-miniconda/definition-manifest.json index 61af654f..216d7d28 100644 --- a/containers/python-3-miniconda/definition-manifest.json +++ b/containers/python-3-miniconda/definition-manifest.json @@ -1,5 +1,5 @@ { - "definitionVersion": "0.201.9", + "definitionVersion": "0.202.0", "build": { "latest": true, "rootDistro": "debian", @@ -7,8 +7,9 @@ "miniconda:${VERSION}-3" ] }, + "architectures": ["linux/amd64", "linux/arm64"], "dependencies": { - "image": "miniconda3:latest", + "image": "continuumio/miniconda3:latest", "imageLink": "https://hub.docker.com/r/continuumio/miniconda3", "debian": [{ "cgIgnore": false, diff --git a/containers/python-3-miniconda/test-project/hello.py b/containers/python-3-miniconda/test-project/hello.py index e0346a7e..461b40b1 100644 --- a/containers/python-3-miniconda/test-project/hello.py +++ b/containers/python-3-miniconda/test-project/hello.py @@ -19,7 +19,7 @@ ax.set(xlabel='time (s)', ylabel='voltage (mV)', title='About as simple as it gets, folks') ax.grid() -fig.savefig("test-project/plot.png") +fig.savefig("plot.png") plt.show() print('Open test-project/plot.png to see the result!')