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marian
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Merged PR 4622: Merge with public master 

This is another update to public master, changes include:

* Alignment and attention matrix output for decoder and scorer
* First steps at refactoring command line options to get rid of boost::options
* Make stand-alone decoder decode line by line.

External regressions tests all pass, there will be more refactoring once we got rid of boost::options.

Related work items: #90261, #90262
This commit is contained in:
Martin Junczys-Dowmunt 2018-08-20 23:48:34 +00:00
Родитель bac7f6d6d8 64dc165586
Коммит 87c98ccdb0
31 изменённых файлов: 472 добавлений и 381 удалений
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13
CHANGELOG.md
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@ -8,12 +8,18 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
## [Unreleased]
### Added
- Returning hard alignments by scorer
- Word alignment generation in scorer
- Attention output generation in decoder and scorer with `--alignment soft`
### Fixed
- Delayed output in line-by-line translation
### Changed
- Generated word alignments include alignments for target EOS tokens
## [1.6.0] - 2018-08-08
### Added
- Faster training (20-30%) by optimizing gradient popagation of biases
- Returning Moses-style hard alignments during decoding single models,
ensembles and n-best lists
@ -36,7 +42,6 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- Seamless training continuation with exponential smoothing
### Fixed
- A couple of bugs in "selection" (transpose, shift, cols, rows) operators
during back-prob for a very specific case: one of the operators is the first
operator after a branch, in that case gradient propgation might be
@ -49,14 +54,12 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
## [1.5.0] - 2018-06-17
### Added
- Average Attention Networks for Transformer model
- 16-bit matrix multiplication on CPU
- Memoization for constant nodes for decoding
- Autotuning for decoding
### Fixed
- GPU decoding optimizations, about 2x faster decoding of transformer models
- Multi-node MPI-based training on GPUs

1
CMakeLists.txt
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@ -25,6 +25,7 @@ message(STATUS "Project version: ${PROJECT_VERSION_STRING_FULL}")
# Set compilation flags
set(CMAKE_CXX_FLAGS_RELEASE " -std=c++11 -O3 -Ofast -m64 -pthread -march=native -Wl,--no-as-needed -funroll-loops -ffinite-math-only -fPIC -Wno-unused-result -Wno-deprecated -Wno-deprecated-gpu-targets")
set(CMAKE_CXX_FLAGS_NONATIVE " -std=c++11 -O3 -Ofast -m64 -pthread -march=x86-64 -mavx -Wl,--no-as-needed -funroll-loops -ffinite-math-only -fPIC -Wno-unused-result -Wno-deprecated -Wno-deprecated-gpu-targets")
set(CMAKE_CXX_FLAGS_DEBUG " -std=c++11 -g -O0 -pthread -fPIC -Wno-unused-result -Wno-deprecated -Wno-deprecated-gpu-targets")
set(CMAKE_CXX_FLAGS_ST "${CMAKE_CXX_FLAGS_RELEASE} -DNDEBUG")
set(CMAKE_CXX_FLAGS_PROFILE "${CMAKE_CXX_FLAGS_RELEASE} -pg -g")

2
src/CMakeLists.txt
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@ -52,6 +52,8 @@ add_library(marian STATIC
models/model_factory.cpp
models/encoder_decoder.cpp
rescorer/score_collector.cpp
translator/history.cpp
translator/output_collector.cpp
translator/output_printer.cpp

124
src/common/cli_helper.h Normal file
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@ -0,0 +1,124 @@
#pragma once
#include <string>
#include "3rd_party/yaml-cpp/yaml.h"
#include "common/logging.h"
namespace marian {
namespace cli {
// helper to replace environment-variable expressions of the form ${VARNAME} in
// a string
static std::string InterpolateEnvVars(std::string str) {
// temporary workaround for MS-internal PhillyOnAzure cluster: warm storage
// presently has the form /hdfs/VC instead of /{gfs,hdfs}/CLUSTER/VC
#if 1
if(getenv("PHILLY_JOB_ID")) {
const char* cluster = getenv("PHILLY_CLUSTER");
const char* vc = getenv("PHILLY_VC");
// this environment variable exists when running on the cluster
if(cluster && vc) {
static const std::string s_gfsPrefix
= std::string("/gfs/") + cluster + "/" + vc + "/";
static const std::string s_hdfsPrefix
= std::string("/hdfs/") + cluster + "/" + vc + "/";
if(str.find(s_gfsPrefix) == 0)
str = std::string("/hdfs/") + vc + "/" + str.substr(s_gfsPrefix.size());
else if(str.find(s_hdfsPrefix) == 0)
str = std::string("/hdfs/") + vc + "/"
+ str.substr(s_hdfsPrefix.size());
}
}
#endif
for(;;) {
const auto pos = str.find("${");
if(pos == std::string::npos)
return str;
const auto epos = str.find("}", pos + 2);
ABORT_IF(epos == std::string::npos,
"interpolate-env-vars option: ${{ without matching }} in '{}'",
str.c_str());
// isolate the variable name
const auto var = str.substr(pos + 2, epos - (pos + 2));
const auto val = getenv(var.c_str());
ABORT_IF(!val,
"interpolate-env-vars option: environment variable '{}' not "
"defined in '{}'",
var.c_str(),
str.c_str());
// replace it; then try again for further replacements
str = str.substr(0, pos) + val + str.substr(epos + 1);
}
}
// helper to implement interpolate-env-vars and relative-paths options
static void ProcessPaths(
YAML::Node& node,
const std::function<std::string(std::string)>& TransformPath,
const std::set<std::string>& PATHS,
bool isPath = false) {
if(isPath) {
if(node.Type() == YAML::NodeType::Scalar) {
std::string nodePath = node.as<std::string>();
// transform the path
if(!nodePath.empty())
node = TransformPath(nodePath);
}
if(node.Type() == YAML::NodeType::Sequence) {
for(auto&& sub : node) {
ProcessPaths(sub, TransformPath, PATHS, true);
}
}
} else {
switch(node.Type()) {
case YAML::NodeType::Sequence:
for(auto&& sub : node) {
ProcessPaths(sub, TransformPath, PATHS, false);
}
break;
case YAML::NodeType::Map:
for(auto&& sub : node) {
std::string key = sub.first.as<std::string>();
ProcessPaths(sub.second, TransformPath, PATHS, PATHS.count(key) > 0);
}
break;
default:
// it is OK
break;
}
}
}
// helper to convert a Yaml node recursively into a string
static void OutputYaml(const YAML::Node node, YAML::Emitter& out) {
std::set<std::string> sorter;
switch(node.Type()) {
case YAML::NodeType::Null: out << node; break;
case YAML::NodeType::Scalar: out << node; break;
case YAML::NodeType::Sequence:
out << YAML::BeginSeq;
for(auto&& n : node)
OutputYaml(n, out);
out << YAML::EndSeq;
break;
case YAML::NodeType::Map:
for(auto& n : node)
sorter.insert(n.first.as<std::string>());
out << YAML::BeginMap;
for(auto& key : sorter) {
out << YAML::Key;
out << key;
out << YAML::Value;
OutputYaml(node[key], out);
}
out << YAML::EndMap;
break;
case YAML::NodeType::Undefined: out << node; break;
}
}
} // namespace cli
} // namespace marian

2
src/common/config.cpp
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@ -29,7 +29,7 @@ YAML::Node& Config::get() {
void Config::log() {
YAML::Emitter out;
OutputYaml(config_, out);
cli::OutputYaml(config_, out);
std::string configString = out.c_str();
std::vector<std::string> results;

10
src/common/config.h
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@ -1,14 +1,18 @@
#pragma once
#include <boost/program_options.hpp>
#include "3rd_party/yaml-cpp/yaml.h"
#include "common/cli_helper.h"
#include "common/config_parser.h"
#include "common/file_stream.h"
#include "common/io.h"
#include "common/logging.h"
#include "common/utils.h"
#ifndef _WIN32 // TODO: why are these needed by a config parser? Can they be
// removed for Linux as well?
// TODO: why are these needed by a config parser? Can they be removed for Linux
// as well?
#ifndef _WIN32
#include <sys/ioctl.h>
#include <unistd.h>
#endif
@ -125,7 +129,7 @@ public:
friend std::ostream& operator<<(std::ostream& out, const Config& config) {
YAML::Emitter outYaml;
OutputYaml(config.get(), outYaml);
cli::OutputYaml(config.get(), outYaml);
out << outYaml.c_str();
return out;
}

183
src/common/config_parser.cpp
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@ -1,28 +1,27 @@
#include <algorithm>
#include <boost/algorithm/string.hpp>
#include <set>
#include <stdexcept>
#include <string>
#include <boost/algorithm/string.hpp>
#if MKL_FOUND
//#include <omp.h>
#include <mkl.h>
#else
#if BLAS_FOUND
//#include <omp.h>
#include <cblas.h>
#endif
#endif
#include "common/definitions.h"
#include "common/cli_helper.h"
#include "common/config.h"
#include "common/config_parser.h"
#include "common/file_stream.h"
#include "common/logging.h"
#include "common/version.h"
#include "common/regex.h"
#include "common/version.h"
#define SET_OPTION(key, type) \
do { \
@ -61,34 +60,6 @@ uint16_t guess_terminal_width(uint16_t max_width) {
return max_width ? std::min(cols, max_width) : cols;
}
// helper to convert a Yaml node recursively into a string
void OutputYaml(const YAML::Node node, YAML::Emitter& out) {
std::set<std::string> sorter;
switch(node.Type()) {
case YAML::NodeType::Null: out << node; break;
case YAML::NodeType::Scalar: out << node; break;
case YAML::NodeType::Sequence:
out << YAML::BeginSeq;
for(auto&& n : node)
OutputYaml(n, out);
out << YAML::EndSeq;
break;
case YAML::NodeType::Map:
for(auto& n : node)
sorter.insert(n.first.as<std::string>());
out << YAML::BeginMap;
for(auto& key : sorter) {
out << YAML::Key;
out << key;
out << YAML::Value;
OutputYaml(node[key], out);
}
out << YAML::EndMap;
break;
case YAML::NodeType::Undefined: out << node; break;
}
}
const std::set<std::string> PATHS = {"model",
"models",
"train-sets",
@ -100,88 +71,6 @@ const std::set<std::string> PATHS = {"model",
"valid-translation-output",
"log"};
// helper to implement interpolate-env-vars and relative-paths options
static void processPaths(
YAML::Node& node,
const std::function<std::string(std::string)>& TransformPath,
bool isPath = false) {
if(isPath) {
if(node.Type() == YAML::NodeType::Scalar) {
std::string nodePath = node.as<std::string>();
// transform the path
if(!nodePath.empty())
node = TransformPath(nodePath);
}
if(node.Type() == YAML::NodeType::Sequence) {
for(auto&& sub : node) {
processPaths(sub, TransformPath, true);
}
}
} else {
switch(node.Type()) {
case YAML::NodeType::Sequence:
for(auto&& sub : node) {
processPaths(sub, TransformPath, false);
}
break;
case YAML::NodeType::Map:
for(auto&& sub : node) {
std::string key = sub.first.as<std::string>();
processPaths(sub.second, TransformPath, PATHS.count(key) > 0);
}
break;
default:
// it is OK
break;
}
}
}
// helper to replace environment-variable expressions of the form ${VARNAME} in
// a string
static std::string interpolateEnvVars(std::string str) {
// temporary workaround for MS-internal PhillyOnAzure cluster: warm storage
// presently has the form /hdfs/VC instead of /{gfs,hdfs}/CLUSTER/VC
// @TODO: remove this workaround
#if 1
if(getenv("PHILLY_JOB_ID")) {
const char* cluster = getenv("PHILLY_CLUSTER");
const char* vc = getenv("PHILLY_VC");
// this environment variable exists when running on the cluster
if(cluster && vc) {
static const std::string s_gfsPrefix
= std::string("/gfs/") + cluster + "/" + vc + "/";
static const std::string s_hdfsPrefix
= std::string("/hdfs/") + cluster + "/" + vc + "/";
if(str.find(s_gfsPrefix) == 0)
str = std::string("/hdfs/") + vc + "/" + str.substr(s_gfsPrefix.size());
else if(str.find(s_hdfsPrefix) == 0)
str = std::string("/hdfs/") + vc + "/"
+ str.substr(s_hdfsPrefix.size());
}
}
#endif
for(;;) {
const auto pos = str.find("${");
if(pos == std::string::npos)
return str;
const auto epos = str.find("}", pos + 2);
ABORT_IF(epos == std::string::npos,
"interpolate-env-vars option: ${{ without matching }} in '{}'",
str.c_str());
// isolate the variable name
const auto var = str.substr(pos + 2, epos - (pos + 2));
const auto val = getenv(var.c_str());
ABORT_IF(!val,
"interpolate-env-vars option: environment variable '{}' not "
"defined in '{}'",
var.c_str(),
str.c_str());
// replace it; then try again for further replacements
str = str.substr(0, pos) + val + str.substr(epos + 1);
}
}
bool ConfigParser::has(const std::string& key) const {
return config_[key];
@ -353,7 +242,7 @@ void ConfigParser::addOptionsModel(po::options_description& desc) {
("ignore-model-config", po::value<bool>()->zero_tokens()->default_value(false),
"Ignore the model configuration saved in npz file")
("type", po::value<std::string>()->default_value("amun"),
"Model type (possible values: amun, nematus, s2s, multi-s2s, transformer)")
"Model type: amun, nematus, s2s, multi-s2s, transformer")
("dim-vocabs", po::value<std::vector<int>>()
->multitoken()
->default_value(std::vector<int>({0, 0}), "0 0"),
@ -541,7 +430,7 @@ void ConfigParser::addOptionsTraining(po::options_description& desc) {
("maxi-batch", po::value<int>()->default_value(100),
"Number of batches to preload for length-based sorting")
("maxi-batch-sort", po::value<std::string>()->default_value("trg"),
"Sorting strategy for maxi-batch: trg (default) src none")
"Sorting strategy for maxi-batch: trg, src, none")
("optimizer,o", po::value<std::string>()->default_value("adam"),
"Optimization algorithm (possible values: sgd, adagrad, adam")
("optimizer-params", po::value<std::vector<float>>()
@ -554,8 +443,8 @@ void ConfigParser::addOptionsTraining(po::options_description& desc) {
("lr-decay", po::value<double>()->default_value(0.0),
"Decay factor for learning rate: lr = lr * arg (0 to disable)")
("lr-decay-strategy", po::value<std::string>()->default_value("epoch+stalled"),
"Strategy for learning rate decaying "
"(possible values: epoch, batches, stalled, epoch+batches, epoch+stalled)")
"Strategy for learning rate decaying: epoch, batches, stalled, "
"epoch+batches, epoch+stalled")
("lr-decay-start", po::value<std::vector<size_t>>()
->multitoken()
->default_value(std::vector<size_t>({10,1}), "10 1"),
@ -603,14 +492,14 @@ void ConfigParser::addOptionsTraining(po::options_description& desc) {
("guided-alignment", po::value<std::string>(),
"Use guided alignment to guide attention")
("guided-alignment-cost", po::value<std::string>()->default_value("ce"),
"Cost type for guided alignment. Possible values: ce (cross-entropy), "
"mse (mean square error), mult (multiplication)")
"Cost type for guided alignment: ce (cross-entropy), mse (mean square "
"error), mult (multiplication)")
("guided-alignment-weight", po::value<double>()->default_value(1),
"Weight for guided alignment cost")
("data-weighting", po::value<std::string>(),
"File with sentence or word weights")
("data-weighting-type", po::value<std::string>()->default_value("sentence"),
"Processing level for data weighting. Possible values: sentence, word")
"Processing level for data weighting: sentence, word")
//("drop-rate", po::value<double>()->default_value(0),
// "Gradient drop ratio (read: https://arxiv.org/abs/1704.05021)")
@ -743,15 +632,15 @@ void ConfigParser::addOptionsTranslate(po::options_description& desc) {
("maxi-batch", po::value<int>()->default_value(1),
"Number of batches to preload for length-based sorting")
("maxi-batch-sort", po::value<std::string>()->default_value("none"),
"Sorting strategy for maxi-batch: none (default) src")
"Sorting strategy for maxi-batch: none, src")
("n-best", po::value<bool>()->zero_tokens()->default_value(false),
"Display n-best list")
("shortlist", po::value<std::vector<std::string>>()->multitoken(),
"Use softmax shortlist: path first best prune")
("weights", po::value<std::vector<float>>()->multitoken(),
"Scorer weights")
("alignment", po::value<float>()->default_value(0.f)->implicit_value(1.f),
"Return word alignments")
("alignment", po::value<std::string>()->implicit_value("1"),
"Return word alignment. Possible values: 0.0-1.0, hard, soft")
// TODO: the options should be available only in server
("port,p", po::value<size_t>()->default_value(8080),
"Port number for web socket server")
@ -805,9 +694,9 @@ void ConfigParser::addOptionsRescore(po::options_description& desc) {
("maxi-batch", po::value<int>()->default_value(100),
"Number of batches to preload for length-based sorting")
("maxi-batch-sort", po::value<std::string>()->default_value("trg"),
"Sorting strategy for maxi-batch: trg (default) src none")
("alignment", po::value<float>()->default_value(0.f)->implicit_value(1.f),
"Return word alignments")
"Sorting strategy for maxi-batch: trg (default), src, none")
("alignment", po::value<std::string>()->implicit_value("1"),
"Return word alignments. Possible values: 0.0-1.0, hard, soft")
;
// clang-format on
desc.add(rescore);
@ -856,17 +745,17 @@ void ConfigParser::parseOptions(int argc, char** argv, bool doValidate) {
exit(0);
}
const auto& interpolateEnvVarsIfRequested
const auto& InterpolateEnvVarsIfRequested
= [&](std::string str) -> std::string {
if(vm_["interpolate-env-vars"].as<bool>())
str = interpolateEnvVars(str);
str = cli::InterpolateEnvVars(str);
return str;
};
bool loadConfig = vm_.count("config");
bool reloadConfig
= (mode_ == ConfigMode::training)
&& boost::filesystem::exists(interpolateEnvVarsIfRequested(
&& boost::filesystem::exists(InterpolateEnvVarsIfRequested(
vm_["model"].as<std::string>() + ".yml"))
&& !vm_["no-reload"].as<bool>();
std::vector<std::string> configPaths;
@ -875,14 +764,14 @@ void ConfigParser::parseOptions(int argc, char** argv, bool doValidate) {
configPaths = vm_["config"].as<std::vector<std::string>>();
config_ = YAML::Node();
for(auto& configPath : configPaths) {
configPath = interpolateEnvVarsIfRequested(
configPath = InterpolateEnvVarsIfRequested(
configPath); // (note: this updates the configPaths array)
for(const auto& it :
YAML::Load(InputFileStream(configPath))) // later file overrides
config_[it.first.as<std::string>()] = it.second;
}
} else if(reloadConfig) {
auto configPath = interpolateEnvVarsIfRequested(
auto configPath = InterpolateEnvVarsIfRequested(
vm_["model"].as<std::string>() + ".yml");
config_ = YAML::Load(InputFileStream(configPath));
configPaths = {configPath};
@ -1042,7 +931,7 @@ void ConfigParser::parseOptions(int argc, char** argv, bool doValidate) {
SET_OPTION("n-best-feature", std::string);
SET_OPTION_NONDEFAULT("summary", std::string);
SET_OPTION("optimize", bool);
SET_OPTION("alignment", float);
SET_OPTION_NONDEFAULT("alignment", std::string);
}
if(mode_ == ConfigMode::translating) {
@ -1055,7 +944,7 @@ void ConfigParser::parseOptions(int argc, char** argv, bool doValidate) {
SET_OPTION("mini-batch-words", int);
SET_OPTION_NONDEFAULT("weights", std::vector<float>);
SET_OPTION_NONDEFAULT("shortlist", std::vector<std::string>);
SET_OPTION("alignment", float);
SET_OPTION_NONDEFAULT("alignment", std::string);
SET_OPTION("port", size_t);
SET_OPTION("optimize", bool);
SET_OPTION("max-length-factor", float);
@ -1120,7 +1009,7 @@ void ConfigParser::parseOptions(int argc, char** argv, bool doValidate) {
}
if(get<bool>("interpolate-env-vars")) {
processPaths(config_, interpolateEnvVars);
cli::ProcessPaths(config_, cli::InterpolateEnvVars, PATHS);
}
if(get<bool>("relative-paths") && !vm_["dump-config"].as<bool>()) {
@ -1134,20 +1023,22 @@ void ConfigParser::parseOptions(int argc, char** argv, bool doValidate) {
ABORT_IF(boost::filesystem::path{configPath}.parent_path() != configDir,
"relative-paths option requires all config files to be in the "
"same directory");
processPaths(config_, [&](const std::string& nodePath) -> std::string {
auto transformFunc = [&](const std::string& nodePath) -> std::string {
// replace relative path w.r.t. configDir
using namespace boost::filesystem;
try {
return canonical(path{nodePath}, configDir).string();
} catch(
boost::filesystem::filesystem_error&
e) { // will fail if file does not exist; use parent in that case
} catch(boost::filesystem::filesystem_error& e) {
// will fail if file does not exist; use parent in that case
std::cerr << e.what() << std::endl;
auto parentPath = path{nodePath}.parent_path();
return (canonical(parentPath, configDir) / path{nodePath}.filename())
.string();
}
});
};
cli::ProcessPaths(config_, transformFunc, PATHS);
}
if(doValidate) {
@ -1165,18 +1056,10 @@ void ConfigParser::parseOptions(int argc, char** argv, bool doValidate) {
if(vm_["dump-config"].as<bool>()) {
YAML::Emitter emit;
OutputYaml(config_, emit);
cli::OutputYaml(config_, emit);
std::cout << emit.c_str() << std::endl;
exit(0);
}
// @TODO: this should probably be in processOptionDevices()
//#ifdef BLAS_FOUND
// //omp_set_num_threads(vm_["omp-threads"].as<size_t>());
//#ifdef MKL_FOUND
// mkl_set_num_threads(vm_["omp-threads"].as<size_t>());
//#endif
//#endif
}
std::vector<DeviceId> ConfigParser::getDevices() {

9
src/common/config_parser.h
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@ -1,12 +1,15 @@
#pragma once
#include <boost/program_options.hpp>
#include "3rd_party/yaml-cpp/yaml.h"
#include "common/definitions.h"
#include "common/file_stream.h"
#include "common/logging.h"
#ifndef _WIN32 // TODO: why are these needed by a config parser? Can they be
// removed for Linux as well?
// TODO: why are these needed by a config parser? Can they be removed for Linux
// as well?
#ifndef _WIN32
#include <sys/ioctl.h>
#include <unistd.h>
#endif
@ -22,8 +25,6 @@ enum struct ConfigMode {
// try to determine the width of the terminal
uint16_t guess_terminal_width(uint16_t max_width = 180);
void OutputYaml(const YAML::Node node, YAML::Emitter& out);
class ConfigParser {
public:
ConfigParser(int argc, char** argv, ConfigMode mode, bool validate = false)

1
src/common/io.h
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@ -14,7 +14,6 @@
// CPU decoding.
namespace marian {
namespace io {
bool isNpz(const std::string& fileName);

2
src/common/logging.h
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@ -1,5 +1,7 @@
#pragma once
#include <iostream>
#include "spdlog/spdlog.h"
/**

31
src/data/alignment.cpp
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@ -33,19 +33,15 @@ std::string WordAlignment::toString() const {
}
WordAlignment ConvertSoftAlignToHardAlign(SoftAlignment alignSoft,
float threshold /*= 1.f*/,
bool reversed /*= true*/,
bool skipEOS /*= false*/) {
size_t shift = alignSoft.size() > 0 && skipEOS ? 1 : 0;
float threshold /*= 1.f*/) {
WordAlignment align;
// Alignments by maximum value
if(threshold == 1.f) {
for(size_t t = 0; t < alignSoft.size() - shift; ++t) {
for(size_t t = 0; t < alignSoft.size(); ++t) {
// Retrieved alignments are in reversed order
size_t rev = reversed ? alignSoft.size() - t - 1 : t;
size_t maxArg = 0;
for(size_t s = 0; s < alignSoft[0].size(); ++s) {
if(alignSoft[rev][maxArg] < alignSoft[rev][s]) {
if(alignSoft[t][maxArg] < alignSoft[t][s]) {
maxArg = s;
}
}
@ -53,11 +49,10 @@ WordAlignment ConvertSoftAlignToHardAlign(SoftAlignment alignSoft,
}
} else {
// Alignments by greather-than-threshold
for(size_t t = 0; t < alignSoft.size() - shift; ++t) {
for(size_t t = 0; t < alignSoft.size(); ++t) {
// Retrieved alignments are in reversed order
size_t rev = reversed ? alignSoft.size() - t - 1 : t;
for(size_t s = 0; s < alignSoft[0].size(); ++s) {
if(alignSoft[rev][s] > threshold) {
if(alignSoft[t][s] > threshold) {
align.push_back(s, t);
}
}
@ -70,5 +65,21 @@ WordAlignment ConvertSoftAlignToHardAlign(SoftAlignment alignSoft,
return align;
}
std::string SoftAlignToString(SoftAlignment align) {
std::stringstream str;
bool first = true;
for(size_t t = 0; t < align.size(); ++t) {
if(!first)
str << " ";
for(size_t s = 0; s < align[t].size(); ++s) {
if(s != 0)
str << ",";
str << align[t][s];
}
first = false;
}
return str.str();
}
} // namespace data
} // namespace marian

6
src/data/alignment.h
Просмотреть файл

@ -50,9 +50,9 @@ public:
typedef std::vector<std::vector<float>> SoftAlignment;
WordAlignment ConvertSoftAlignToHardAlign(SoftAlignment alignSoft,
float threshold = 1.f,
bool reversed = true,
bool skipEOS = false);
float threshold = 1.f);
std::string SoftAlignToString(SoftAlignment align);
} // namespace data
} // namespace marian

1
src/data/batch_generator.h
Просмотреть файл

@ -13,7 +13,6 @@
#include "training/training_state.h"
namespace marian {
namespace data {
template <class DataSet>

1
src/data/batch_stats.h
Просмотреть файл

@ -8,7 +8,6 @@
#include "data/vocab.h"
namespace marian {
namespace data {
class BatchStats {

1
src/graph/chainable.h
Просмотреть файл

@ -7,7 +7,6 @@
#include "3rd_party/exception.h"
#include "common/definitions.h"
// Parent namespace for the Marian project
namespace marian {
#define NodeOp(op) [=]() { op; }

5
src/graph/expression_graph.h
Просмотреть файл

@ -37,7 +37,7 @@ public:
shortterm_(New<WeakMemory>()),
longterm_(New<Memory>()) {}
Tensors(Ptr<Backend> backend, Ptr<Device> device)
Tensors(Ptr<Backend> backend, Ptr<Device> device)
: tensors_(New<TensorAllocator>(backend, device)),
cache_(New<TensorAllocator>(backend)),
shortterm_(New<WeakMemory>()),
@ -156,7 +156,8 @@ public:
params_->clear();
}
void setDevice(DeviceId deviceId = {0, DeviceType::gpu}, Ptr<Device> device = nullptr);
void setDevice(DeviceId deviceId = {0, DeviceType::gpu},
Ptr<Device> device = nullptr);
DeviceId getDeviceId() { return backend_->getDeviceId(); }

4
src/microsoft/quicksand.cpp
Просмотреть файл

@ -97,9 +97,7 @@ public:
}
}
void setWorkspace(uint8_t* data, size_t size) {
device_->set(data, size);
}
void setWorkspace(uint8_t* data, size_t size) { device_->set(data, size); }
QSNBestBatch decode(const QSBatch& qsBatch,
size_t maxLength,

3
src/models/encoder_decoder.cpp
Просмотреть файл

@ -1,4 +1,5 @@
#include "encoder_decoder.h"
#include "common/cli_helper.h"
namespace marian {
@ -91,7 +92,7 @@ Config::YamlNode EncoderDecoder::getModelParameters() {
std::string EncoderDecoder::getModelParametersAsString() {
auto yaml = getModelParameters();
YAML::Emitter out;
OutputYaml(yaml, out);
cli::OutputYaml(yaml, out);
return std::string(out.c_str());
}

1
src/models/model_factory.h
Просмотреть файл

@ -6,7 +6,6 @@
#include "models/encoder_decoder.h"
namespace marian {
namespace models {
class EncoderFactory : public Factory {

8
src/rescorer/rescorer.h
Просмотреть файл

@ -54,7 +54,7 @@ public:
? std::static_pointer_cast<CorpusBase>(
New<CorpusNBest>(options_))
: std::static_pointer_cast<CorpusBase>(New<Corpus>(options_))) {
ABORT_IF(options_->has("summary") && options_->get<float>("alignment", .0f),
ABORT_IF(options_->has("summary") && options_->has("alignment"),
"Alignments can not be produced with summarized score");
corpus_->prepare();
@ -96,9 +96,9 @@ public:
Ptr<ScoreCollector> output = options_->get<bool>("n-best")
? std::static_pointer_cast<ScoreCollector>(
New<ScoreCollectorNBest>(options_))
: New<ScoreCollector>();
: New<ScoreCollector>(options_);
float alignment = options_->get<float>("alignment", .0f);
std::string alignment = options_->get<std::string>("alignment", "");
bool summarize = options_->has("summary");
std::string summary
= summarize ? options_->get<std::string>("summary") : "cross-entropy";
@ -134,7 +134,7 @@ public:
// soft alignments for each sentence in the batch
std::vector<data::SoftAlignment> aligns(batch->size());
if(alignment > .0f) {
if(!alignment.empty()) {
getAlignmentsForBatch(builder->getAlignment(), batch, aligns);
}

122
src/rescorer/score_collector.cpp Normal file
Просмотреть файл

@ -0,0 +1,122 @@
#include "rescorer/score_collector.h"
#include "common/logging.h"
#include "common/utils.h"
#include <iostream>
namespace marian {
ScoreCollector::ScoreCollector(const Ptr<Config>& options)
: nextId_(0),
outStrm_(new OutputFileStream(std::cout)),
alignment_(options->get<std::string>("alignment", "")),
alignmentThreshold_(getAlignmentThreshold(alignment_)) {}
void ScoreCollector::Write(long id, const std::string& message) {
boost::mutex::scoped_lock lock(mutex_);
if(id == nextId_) {
((std::ostream&)*outStrm_) << message << std::endl;
++nextId_;
typename Outputs::const_iterator iter, iterNext;
iter = outputs_.begin();
while(iter != outputs_.end()) {
long currId = iter->first;
if(currId == nextId_) {
// 1st element in the map is the next
((std::ostream&)*outStrm_) << iter->second << std::endl;
++nextId_;
// delete current record, move iter on 1
iterNext = iter;
++iterNext;
outputs_.erase(iter);
iter = iterNext;
} else {
// not the next. stop iterating
assert(nextId_ < currId);
break;
}
}
} else {
// save for later
outputs_[id] = message;
}
}
void ScoreCollector::Write(long id,
float score,
const data::SoftAlignment& align) {
auto msg = std::to_string(score);
if(!alignment_.empty() && !align.empty())
msg += " ||| " + getAlignment(align);
Write(id, msg);
}
std::string ScoreCollector::getAlignment(const data::SoftAlignment& align) {
if(alignment_ == "soft") {
return data::SoftAlignToString(align);
} else if(alignment_ == "hard") {
return data::ConvertSoftAlignToHardAlign(align, 1.f).toString();
} else if(alignmentThreshold_ > 0.f) {
return data::ConvertSoftAlignToHardAlign(align, alignmentThreshold_)
.toString();
} else {
ABORT("Unrecognized word alignment type");
}
return "";
}
ScoreCollectorNBest::ScoreCollectorNBest(const Ptr<Config>& options)
: ScoreCollector(options),
nBestList_(options->get<std::vector<std::string>>("train-sets").back()),
fname_(options->get<std::string>("n-best-feature")) {
file_.reset(new InputFileStream(nBestList_));
}
void ScoreCollectorNBest::Write(long id,
float score,
const data::SoftAlignment& align) {
std::string line;
{
boost::mutex::scoped_lock lock(mutex_);
auto iter = buffer_.find(id);
if(iter == buffer_.end()) {
ABORT_IF(lastRead_ >= id,
"Entry {} < {} already read but not in buffer",
id,
lastRead_);
std::string line;
while(lastRead_ < id && utils::GetLine((std::istream&)*file_, line)) {
lastRead_++;
iter = buffer_.emplace(lastRead_, line).first;
}
}
line = iter->second;
buffer_.erase(iter);
}
ScoreCollector::Write(id, addToNBest(line, fname_, score, align));
}
std::string ScoreCollectorNBest::addToNBest(const std::string nbest,
const std::string feature,
float score,
const data::SoftAlignment& align) {
std::vector<std::string> fields;
utils::Split(nbest, fields, "|||");
std::stringstream ss;
if(!alignment_.empty() && !align.empty())
ss << " " << getAlignment(align) << " |||";
ss << fields[2] << feature << "= " << score << " ";
fields[2] = ss.str();
return utils::Join(fields, "|||");
}
} // namespace marian

129
src/rescorer/score_collector.h
Просмотреть файл

@ -1,69 +1,23 @@
#pragma once
#include <boost/thread/mutex.hpp>
#include <boost/unordered_map.hpp>
#include <iostream>
#include <map>
#include "common/config.h"
#include "common/definitions.h"
#include "common/file_stream.h"
#include "common/logging.h"
#include "common/utils.h"
#include "data/alignment.h"
namespace marian {
class ScoreCollector {
public:
ScoreCollector() : nextId_(0), outStrm_(new OutputFileStream(std::cout)){};
virtual void Write(long id, const std::string& message) {
boost::mutex::scoped_lock lock(mutex_);
if(id == nextId_) {
((std::ostream&)*outStrm_) << message << std::endl;
++nextId_;
typename Outputs::const_iterator iter, iterNext;
iter = outputs_.begin();
while(iter != outputs_.end()) {
long currId = iter->first;
if(currId == nextId_) {
// 1st element in the map is the next
((std::ostream&)*outStrm_) << iter->second << std::endl;
++nextId_;
// delete current record, move iter on 1
iterNext = iter;
++iterNext;
outputs_.erase(iter);
iter = iterNext;
} else {
// not the next. stop iterating
assert(nextId_ < currId);
break;
}
}
} else {
// save for later
outputs_[id] = message;
}
}
ScoreCollector(const Ptr<Config>& options);
virtual void Write(long id, const std::string& message);
virtual void Write(long id,
float score,
const data::SoftAlignment& align = {}) {
auto msg = std::to_string(score);
if(!align.empty()) {
auto wordAlign
= data::ConvertSoftAlignToHardAlign(align, 1.f, false, true);
msg += " ||| " + wordAlign.toString();
}
Write(id, msg);
}
const data::SoftAlignment& align = {});
protected:
long nextId_{0};
@ -72,69 +26,42 @@ protected:
typedef std::map<long, std::string> Outputs;
Outputs outputs_;
std::string alignment_;
float alignmentThreshold_{0.f};
std::string getAlignment(const data::SoftAlignment& align);
float getAlignmentThreshold(const std::string& str) {
try {
return std::max(std::stof(str), 0.f);
} catch(...) {
return 0.f;
}
}
};
class ScoreCollectorNBest : public ScoreCollector {
private:
Ptr<Config> options_;
public:
ScoreCollectorNBest() = delete;
ScoreCollectorNBest(const Ptr<Config>& options);
ScoreCollectorNBest(const ScoreCollectorNBest&) = delete;
virtual void Write(long id,
float score,
const data::SoftAlignment& align = {});
private:
std::string nBestList_;
std::string fname_;
long lastRead_{-1};
UPtr<InputFileStream> file_;
std::map<long, std::string> buffer_;
public:
ScoreCollectorNBest() = delete;
ScoreCollectorNBest(const Ptr<Config>& options) : options_(options) {
auto paths = options_->get<std::vector<std::string>>("train-sets");
nBestList_ = paths.back();
fname_ = options_->get<std::string>("n-best-feature");
file_.reset(new InputFileStream(nBestList_));
}
ScoreCollectorNBest(const ScoreCollectorNBest&) = delete;
std::string addToNBest(const std::string nbest,
const std::string feature,
float score,
const data::SoftAlignment& align = {}) {
std::vector<std::string> fields;
utils::Split(nbest, fields, "|||");
std::stringstream ss;
if(!align.empty()) {
auto wordAlign
= data::ConvertSoftAlignToHardAlign(align, 1.f, false, true);
ss << " " << wordAlign.toString() << " |||";
}
ss << fields[2] << feature << "= " << score << " ";
fields[2] = ss.str();
return utils::Join(fields, "|||");
}
virtual void Write(long id, float score, const data::SoftAlignment& align) {
std::string line;
{
boost::mutex::scoped_lock lock(mutex_);
auto iter = buffer_.find(id);
if(iter == buffer_.end()) {
ABORT_IF(lastRead_ >= id,
"Entry {} < {} already read but not in buffer",
id,
lastRead_);
std::string line;
while(lastRead_ < id && utils::GetLine((std::istream&)*file_, line)) {
lastRead_++;
iter = buffer_.emplace(lastRead_, line).first;
}
}
line = iter->second;
buffer_.erase(iter);
}
ScoreCollector::Write(id, addToNBest(line, fname_, score, align));
}
const data::SoftAlignment& align = {});
};
} // namespace marian

1
src/rnn/attention.h
Просмотреть файл

@ -5,7 +5,6 @@
#include "rnn/types.h"
namespace marian {
namespace rnn {
Expr attOps(Expr va, Expr context, Expr state);

5
src/tensors/allocator.h
Просмотреть файл

@ -173,10 +173,7 @@ public:
size_t bytes,
size_t step,
size_t alignment = 256)
: device_(device),
available_(0),
step_(step),
alignment_(alignment) {
: device_(device), available_(0), step_(step), alignment_(alignment) {
reserve(bytes);
}

6
src/tensors/device.h
Просмотреть файл

@ -70,9 +70,11 @@ public:
// doesn't allocate anything, just checks size.
void reserve(size_t size) {
ABORT_IF(size > size_, "Requested size {} is larger than pre-allocated size {}", size, size_);
ABORT_IF(size > size_,
"Requested size {} is larger than pre-allocated size {}",
size,
size_);
}
};
} // namespace cpu

4
src/training/gradient_dropping/sparse_tensor.h
Просмотреть файл

@ -177,8 +177,8 @@ public:
}
#ifdef CUDA_FOUND
else {
std::vector<int> outputs
= gpu::lower_bounds(indices(), values, size(), backend_->getDeviceId());
std::vector<int> outputs = gpu::lower_bounds(
indices(), values, size(), backend_->getDeviceId());
startOffset = outputs[0];
endOffset = outputs[1];

18
src/translator/beam_search.h
Просмотреть файл

@ -41,10 +41,10 @@ public:
Ptr<data::CorpusBatch> batch) {
Beams newBeams(beams.size());
std::vector<float> alignments;
if(options_->get<float>("alignment", 0.f))
std::vector<float> align;
if(options_->has("alignment"))
// Use alignments from the first scorer, even if ensemble
alignments = scorers_[0]->getAlignment();
align = scorers_[0]->getAlignment();
for(size_t i = 0; i < keys.size(); ++i) {
// Keys contains indices to vocab items in the entire beam.
@ -93,10 +93,9 @@ public:
}
// Set alignments
if(!alignments.empty()) {
auto align = getAlignmentsForHypothesis(
alignments, batch, beamSize, beamHypIdx, beamIdx);
hyp->SetAlignment(align);
if(!align.empty()) {
hyp->SetAlignment(
getAlignmentsForHypothesis(align, batch, beamHypIdx, beamIdx));
}
newBeam.push_back(hyp);
@ -106,9 +105,8 @@ public:
}
std::vector<float> getAlignmentsForHypothesis(
const std::vector<float> alignments,
const std::vector<float> alignAll,
Ptr<data::CorpusBatch> batch,
int beamSize,
int beamHypIdx,
int beamIdx) {
// Let's B be the beam size, N be the number of batched sentences,
@ -136,7 +134,7 @@ public:
size_t a = ((batchWidth * beamHypIdx) + beamIdx) + (batchSize * w);
size_t m = a % batchWidth;
if(batch->front()->mask()[m] != 0)
align.emplace_back(alignments[a]);
align.emplace_back(alignAll[a]);
}
return align;

28
src/translator/output_printer.cpp
Просмотреть файл

@ -2,18 +2,30 @@
namespace marian {
data::WordAlignment OutputPrinter::getAlignment(const Ptr<Hypothesis>& hyp,
float threshold) {
data::SoftAlignment aligns;
// Skip EOS
auto last = hyp->GetPrevHyp();
// Get soft alignments for each target word
std::string OutputPrinter::getAlignment(const Ptr<Hypothesis>& hyp) {
data::SoftAlignment align;
auto last = hyp;
// get soft alignments for each target word starting from the last one
while(last->GetPrevHyp().get() != nullptr) {
aligns.push_back(last->GetAlignment());
align.push_back(last->GetAlignment());
last = last->GetPrevHyp();
}
return data::ConvertSoftAlignToHardAlign(aligns, threshold, true);
// reverse alignments
std::reverse(align.begin(), align.end());
if(alignment_ == "soft") {
return data::SoftAlignToString(align);
} else if(alignment_ == "hard") {
return data::ConvertSoftAlignToHardAlign(align, 1.f).toString();
} else if(alignmentThreshold_ > 0.f) {
return data::ConvertSoftAlignToHardAlign(align, alignmentThreshold_)
.toString();
} else {
ABORT("Unrecognized word alignment type");
}
return "";
}
} // namespace marian

26
src/translator/output_printer.h
Просмотреть файл

@ -19,7 +19,8 @@ public:
nbest_(options->get<bool>("n-best", false)
? options->get<size_t>("beam-size")
: 0),
alignment_(options->get<float>("alignment", 0.f)) {}
alignment_(options->get<std::string>("alignment", "")),
alignmentThreshold_(getAlignmentThreshold(alignment_)) {}
template <class OStream>
void print(Ptr<History> history, OStream& best1, OStream& bestn) {
@ -33,12 +34,10 @@ public:
std::string translation = utils::Join((*vocab_)(words), " ", reverse_);
bestn << history->GetLineNum() << " ||| " << translation;
if(alignment_ > 0.f) {
bestn << " ||| " << getAlignment(hypo, alignment_).toString();
}
if(!alignment_.empty())
bestn << " ||| " << getAlignment(hypo);
bestn << " |||";
if(hypo->GetCostBreakdown().empty()) {
bestn << " F0=" << hypo->GetCost();
} else {
@ -62,9 +61,9 @@ public:
std::string translation = utils::Join((*vocab_)(words), " ", reverse_);
best1 << translation;
if(alignment_ > 0.f) {
if(!alignment_.empty()) {
const auto& hypo = std::get<1>(result);
best1 << " ||| " << getAlignment(hypo, alignment_).toString();
best1 << " ||| " << getAlignment(hypo);
}
best1 << std::flush;
}
@ -73,8 +72,17 @@ private:
Ptr<Vocab> vocab_;
bool reverse_{false};
size_t nbest_{0};
float alignment_{0.f};
std::string alignment_;
float alignmentThreshold_{0.f};
data::WordAlignment getAlignment(const Ptr<Hypothesis>& hyp, float threshold);
std::string getAlignment(const Ptr<Hypothesis>& hyp);
float getAlignmentThreshold(const std::string& str) {
try {
return std::max(std::stof(str), 0.f);
} catch(...) {
return 0.f;
}
}
};
} // namespace marian