Граф коммитов

53 Коммитов

Автор SHA1 Сообщение Дата
Jacob Freck 8c2bf0c1a6
Feature: spark submit scheduling internal (#674)
* add internal support for scheduling_target cluster submit

* add internal support for scheduling target job submission

* add cli flag
2018-10-26 16:58:38 -07:00
Jacob Freck fc5053654c
Feature: 0.10.0 remove deprecated code (#671)
* remove deprecated code

* remove unused imports

* fix field name

* remove unused imports

* clean up comments, linting warnings
2018-10-24 10:43:47 -07:00
Jacob Freck 4408c4fc41
Feature: Spark scheduling target (#661)
* initial

* update pipfile and pipfile.lock

* uncomment scheduling target, start ssh_submit impl

* get rid of debug code

* finish ssh_submit implementation

* serialize object instead of properties

* fix upload log bug, temp workaround for get logs

* remove unused function

* clean up node_scripts submit, remove debug code

* ensure warns on deprecated test

* remove commented timeout

* start scheduling_target for job_submission

* continue job scheduling target implementation

* update pipefile.lock

* update Pipfile deps, pin pynacl to fix build failure

* fix syntax

* fix pipfile with latest azure-nspkg

* update path for scheduling scripts

* update config.py import

* add nohup dependency

* use nohup and exit immediately

* remove bad dep

* remove nohup

* remove commented code

* add block to ssh, get retcode from node_exec

* fix typo

* fix some imports, add test stubs

* fixes

* start implementation of task table service

* add scheduling_target support for get_application_log

* todos

* remove useless statement

* move get_application_status to core, add scheduling_target support

* update deps in requirements.txt

* fix false positive pylint import error

* remove bad import

* bad local variable

* add batch task abstraction, add datetime field

* mediate table insertion with task abstraction

* fix issues with task abstraction usage

* fix pylint import error

* fix update task on run

* update job submission test

* make test package, update pylint

* update job submission with scheduling_target

* add job support for scheduling_target

* fix taskstate serialization to storage

* fix job submission job manager task, catch table storage errors

* fix import

* fix imports for batch sdk 5.0+

* fix test model module

* fix node election exception catch

* start fix job tests

* move get_task_status to base

* fix job tests

* fix get_application, add abstraction to batch task gets

* fix some bugs, remove some debug statements

* fix test

* use jobstate and application state

* add start_task retries

* make jobstate an enum

* fix import

* fixes

* fixes

* revert settings.json

* fixes for application state in cli

* conditionally create storage table

* remove commented code

* conditionally create storage table

* remove commented code

* fix test

* respond to comments

* fix debug statement, fix starttask issue

* remove debug test print

* formatting

* update doc string with correct return value

* revert settings.json

* more robust starget test, fix get_application for starget

* whitespace
2018-10-23 15:47:54 -07:00
Jacob Freck 93615d9a43
Fix: spark roll back scheduling disable (#653)
* disable offlining on node

* disable scheduling_target in config, cli, and sdk

* remove schedluing target function

* formatting

* remove alway none return value
2018-08-29 15:40:09 -07:00
Jacob Freck 828162ef10
Internal: fix pylint warnings (#651)
* inital, remove unused imports

* run yapf

* remove unused imports and variables, fix declaration outside init

* fix some pylint warnings, add ssh_into_master

* remove unused imports

* unused variables

* string and function normalization

* stop using list comprehension for side effects, make method function

* stop using protected member

* various pylint fixes

* formatting

* formatting

* add retry decorator with tests

* start adding retry decorator, retry docker compose download

* update pip and tests

* logic fix

* change no delete if

* factor out reused functions

* fix wait_for_all_nodes

* fix download return type bug

* test vsts ci update

* temporarily disable integration tests

* syntax fix

* update vsts build

* add back integration tests, remove debug branch

* remove parallel unit tests

* more verbose clis

* update pylint

* typo

* fix imports

* function returns nothing, don't return

* make iterator list

* change debug value
2018-08-24 17:21:22 -07:00
Jacob Freck 442228a30f
Deprecate: remove custom scripts (#650) 2018-08-17 20:36:11 -04:00
Jacob Freck 7c14648005
Fix: expose get cluster configuration API (#648)
* fix get and ssh cli calls, add get_configuration api

* update builds to lint aztk_cli in parallel

* remove unnecessary get_configuration calls
2018-08-17 16:12:08 -04:00
Jacob Freck b7bdd8c268
Feature: add brief flag to debug tool (#634)
* add brief flag

* add some docs

* fix requirements
2018-08-16 15:18:43 -04:00
Jacob Freck eef36dc062
Feature: 0.9.0 deprecated code removal (#645)
* remove deprecated code

* remove deprecated tests, yapf test directory

* add import

* remove unused test

* remove deprecated field name in tests

* update test parameter to non deprecated name
2018-08-16 15:11:59 -04:00
mmduyzend 9d554c3255 Feature: Add ability to specify docker run options in toolkit config (#613)
* Feature: Add ability to specify docker run options in cluster config

* update function calls to match new sdk refactor

* fix empty docker_run_options failure

* formatting

* fix formatting (#3)
2018-08-13 09:03:58 -07:00
Jacob Freck 7730c46ee4
Internal: verify code formatting in build (#633)
* format all files, enforce formatting in travis build

* add yapf to vsts build

* update vsts build

* fix

* fix

* fix

* change queue to ubuntu

* revert

* temporarily enable builds on pushes to this branch

* change to non preview

* revert

* update yapf version, rerun

* update pytest parallelism

* add retry to arm call to avoid failures

* remove non-master trigger

* update builds, formatting style
2018-08-06 15:29:06 -07:00
Jacob Freck b18eb695a1
Feature: SDK refactor (#622)
* start refactor

* continue refactor for cluster and job functions

* fix imports

* fixes

* fixes

* refactor integration test secrets management

* fix cluster create, add new test

* add tests for new sdk api and fix bugs

* fix naming and bugs

* update job operations naming, bug fixes

* fix cluster tests

* fix joboperations and tests

* update cli and fix some bugs

* start fixes

* fix pylint errors, bugs

* add deprecated warning checks, rename tests

* add docstrings for baseoperations

* add docstrings

* docstrings, add back compat for coreclient, fix init for spark client

* whitespace

* docstrings, whitespace

* docstrings, fixes

* docstrings, fixes

* fix the sdk documentation, bugs

* fix method call

* pool_id->id

* rename ids

* cluster_id->id

* cluster_id->id

* add todo

* fixes

* add some todos

* rename pool to cluster, add todo for nodes params

* add todos for nodes param removal

* update functions names

* remove deprecated fucntion calls

* update docs and docstrings

* update docstrings

* get rid of TODOs, fix docstrings

* remove unused setting

* inheritance -> composition

* fix models bugs

* fix create_user bug

* update sdk_example.py

* fix create user argument issue

* update sdk_example.py

* update doc

* use Software model instead of string

* add job wait flag, add cluster application wait functions

* add docs for wait, update tests

* fix bug

* add clientrequesterror catch to fix tests
2018-08-03 15:20:05 -07:00
Jacob Freck a8f8e92629
Fix: docs links version (#614)
* update changelog

* update versions
2018-06-20 14:55:13 -07:00
Jacob Freck 4e0b1ecd0f
Fix: spark debug tool filter out .venv, make debug tool testable (#612)
* filter out .venv

* add NodeOutput model

* add debug tool integration test

* add test for debug tool

* split condition

* revert style change

* remove debug print

* whitespace

* remove other model implementation

* fix cluster copy

* fix cluster run and cluster copy
2018-06-20 14:26:35 -07:00
Jacob Freck 34b25855d5
Fix: release v0.8.0 (#600)
* update changelog and version

* update changelog

* add deprecation version and tests

* fix tests

* update changelog with deprecations

* update changelog
2018-06-11 15:48:08 -07:00
mmduyzend 1cc71c7a59 Fix: allow cluster config to be printed when no username has been set (#597) 2018-06-11 10:42:24 -07:00
mmduyzend 98c601ceb8 Fix: Deprecation messages cause TypeError in non-verbose mode (#596)
* Stop deprecate() from throwing when not in verbose mode

* Improve deprecation warning messages
2018-06-08 10:59:13 -07:00
mmduyzend 7d7a814c50 Fix: fix typos (#595) 2018-06-07 09:57:43 -07:00
Jacob Freck 88d04195ec
Feature: add cluster list quiet flag, ability to compose with delete (#581)
* add quiet flag, ability to compose with delete

* log.print instead of print

* add some docs
2018-06-06 16:03:34 -07:00
Brian fbf1bab704
Conda, Apt-Get and Pip Install Plugins (#594)
* Added install plugins

* Moved packages to directory

* Removed channel from conda install

* changed default to none

* Added line

* fixed template

* Fixed naming of apt get
2018-06-06 15:16:27 -07:00
Timothee Guerin fa3ac0eb3b
Fix: --size-low-pri being ignored (#593) 2018-06-05 10:54:02 -07:00
Jacob Freck 3f0c8f9bfc
Fix: set logger to stdout (#588)
* set logger to stdout

* typo

* add log.print level
2018-06-04 17:39:24 -07:00
Jacob Freck f16aac091e
Feature: pure python ssh (#577)
* forward multiple ports

* plumb through cli

* continue cli implementation

* fixes

* pylint ignore

* spacing

* remove debug stuff, fix bug

* add --internal support

* add to init

* add comment

* remove nesting

* add logging

* add some docs
2018-06-04 17:16:51 -07:00
Jacob Freck af449dc194
Feature: add node run command (#572)
* add node run command

* whitespace

* add node-run doc

* add host flag

* refactor, print->log

* generated username

* more secure random

* better handling of find node, type conversion

* add generate_user_on_node

* docs update

* fix docs

* remove duplicate import, sort
2018-06-04 13:58:33 -07:00
Timothee Guerin b9a863b2f5
Warnings show stacktrace on verbose (#587) 2018-06-04 08:10:00 -07:00
Jacob Freck 8b8cd6260f
Fix: Remove old spark-defaults.conf jars (#567) 2018-05-30 13:05:55 -07:00
Timothee Guerin 8fea9ce092
Feature: Disable scheduling on group of nodes (#540) 2018-05-30 13:02:48 -07:00
Timothee Guerin 02f336b0a0
Feature: New Models design with auto validation, default and merging (#543) 2018-05-30 09:07:09 -07:00
lachiemurray f6735cc6dd Feature: Support passing of remote executables via aztk spark cluster submit (#549) 2018-05-24 10:29:23 -07:00
Jacob Freck 1527929e30
Feature: TensorflowOnSpark python plugin (#525)
* initial commit

* update

* update

* add gpu support

* remove comment

* change class to function

* fix merge issue

* add some docs
2018-05-21 13:22:55 -07:00
Jacob Freck 603a413d12
Feature: nvBLAS and OpenBLAS plugin (#539)
* add openblas plugin, update gpu docker images with netlib-lgpl

* update images and plugins

* add nvblas plugin

* revert gpu docker image change, add -Pnetlib-lgpl to base images

* change configuraitons to functions, add pugins to cluster.yaml
2018-05-15 17:47:41 -07:00
Timothee Guerin a99bbe19e6
Fix pass docker repo command back to the cluster config (#538) 2018-05-03 08:48:38 -07:00
Timothee Guerin 7a7e63c54f
Feature: New Toolkit configuration (#507) 2018-05-01 16:36:44 -07:00
Timothee Guerin 9bc76396bc
Docs: Added worker on master docs (#531) 2018-05-01 14:40:31 -07:00
Jacob Freck 779bffb2da
Feature: refactor docker images (#510)
* add spark2.3.0 hadoop2.8.3 dockerfile

* start update to docker image

* add SPARK_DIST_CLASSPATH to bashrc, source .bashrc in docker run

* add maven install for jars

* docker image update and code fix

* add libthrift (still broken)

* start image refactor, build from source,

* add refactor to r base image

* finish refactor r image

* add storage jars and deps

* exclude netty to get rid of dependency conflict

* add miniconda image

* update 2.2.0 base, anaconda image

* remove unused cuda-8.0 image

* start pipenv implementation

* miniconda version arg

* update anaconda and miniconda image

* style

* pivot to virtualenv

* remove virtualenv from path when submitting apps

* flatten layers

* explicit calls to aztk python instead of activating virtualenv

* update base, miniconda, anaconda

* add compatibility version for base aztk images

* typo fix

* update pom

* update environment variable name

* update environment variables

* add anaconda images base & gpu

* update gpu and miniconda base images

* create venv in cluster create

* update base docker files, remove virtualenv

* fix path

* add exclusion to base images

* update r images

* delete python images (in favor of anaconda and miniconda)

* add miniconda gpu images

* update comment

* update aztk_version_compatibility to dokcer image version

* add a build script

* virutalenv->pipenv, add pipfile & pipfile.lock remove secretstorage

* aztk/staging->aztk/spark

* remove jars, add .null to keep directory

* update pipfile, update jupyter and jupyterlab

* update default images

* update base images to fix hdfs

* update build script with correct path

* add spark1.6.3 anaconda, miniconda, r base and gpu images

* update build script to include spark1.6.3

* mkdir out

* exclude commons lang and slf4j dependencies

* mkdir out

* no fail if dir exists

* update node_scripts

* update env var name

* update env var name

* fix the docker_repo docs

* master->0.7.0
2018-04-30 17:19:01 -07:00
Jacob Freck 47000a5c7d
Bug: add timeout handling to cluster_run and copy (#524)
* update cluster_run and copy to handle timeouts

* fix

* move timeout default to connect function
2018-04-30 16:49:58 -07:00
Timothee Guerin c98df7d1df
Feature: Added custom scripts functionality for plugins with the cli(Deprecate custom scripts) (#517) 2018-04-27 10:31:24 -07:00
Jacob Freck 2e995b4899
Feature: spark ui proxy plugin (#467)
* initial commit

* add args

* add docs

* change default plugins

* update ssh cli ui, remove plugin name

* change conditional

* update docs to include jupyterlab

* remove spark_ui_proxy as default plugin
2018-04-23 12:12:31 -07:00
Jacob Freck 44a07654aa
Feature: spark debug tool (#455)
* start implementation of cluster debug utility

* update debug program

* update debug

* fix output directory structure

* cleanup output, add error checking

* sort imports

* start untar

* extract tar

* add debug.py to pylintc ignore, line too long

* crlf->lf

* add app logs

* call get_spark_app_logs, typos

* add docs

* remove debug.py from pylintrc ignore

* added debug.py back to pylint ignore

* change pylint ignore

* remove commented log

* update cluster_run

* refactor cluster_copy

* update debug, add spinner for run and copy

* make new sdk cluster_download endpoint
2018-04-09 15:02:43 -07:00
Jacob Freck 1eaa1b6e42
Feature: add internal flag to node commands (#482)
* add internal ssh flag

* add --internal flag to cluster get

* cluster run internal flag

* fix add command back

* cluster copy internal

* fix method params

* fix method params

* add debug statement

* fix params

* remove debug statement

* fixes

* add debug statement

* remove debug statement

* add hostname to /etc/hosts

* remove hostname from /etc/hosts

* add sdk docs for internal switch in cluster run and copy
2018-04-06 15:59:13 -07:00
Jacob Freck be8cd2a490
Bug: Remove unused ssh plugin flags (#488) 2018-04-06 14:55:47 -07:00
Jacob Freck a33bdbc5a9
Bug: fix broken spark init command (#486) 2018-04-06 14:10:40 -07:00
Jacob Freck 4ef3dd09df
Bug: add spark.history.fs.logDirectory to required keys (#456)
* add spark.history.fs.logDirectory to requried keys

* add spark_event_log_enabled_key to required_keys

* docs, add history server config to spark-defaults.conf

* fix bad logic

* crlf->lf
2018-04-05 14:11:35 -07:00
Jacob Freck 32de752d53
Feature: Spark add output logs flag (#468)
* add output flag to cluster submit

* add output flag to cluster app-logs

* add output flag to job get-app-logs

* sort imports

* make spinner context
2018-04-05 12:21:56 -07:00
Jacob Freck 8889059aad
Feature: match cluster submit exit code in cli (#478) 2018-04-05 11:54:25 -07:00
Jacob Freck ee1e61bb9d
Bug: fix spark job submit path (#474)
* fix job submit path, fix raise error, remove print

* source bashrc before executing
2018-04-03 11:19:35 -07:00
Jacob Freck 2dd7891499
Bug: add support for jars, pyfiles, files in Jobs (#408)
* add support for jars, pyfiles, files, refactor JobConfig

* set encoding explicitly

* fix typerror bug in mixed_mode()
2018-03-26 11:38:05 -07:00
Jacob Freck 5761a3663a
Bug: set explicit file open encoding (#448)
* explicit file encoding

* crlf->lf
2018-03-23 13:42:30 -07:00
Jacob Freck 8aa1843f23
Feature: managed storage for clusters and jobs (#443)
* add in storage management for clusters, jobs

* add warning logs on cli delete

* whitespace

* add keep-logs flag

* add docs on storage lifetime
2018-03-20 10:45:49 -07:00
Timothee Guerin 9253aac0ea
Fix: VNet required error now showing if using mixed mode without it (#440) 2018-03-14 10:27:48 -07:00