Граф коммитов

197 Коммитов

Автор SHA1 Сообщение Дата
Brian Hoang e43e3dca51
Fixed this batch api (#378) 2021-05-19 09:23:09 -07:00
Brian Hoang 0c2af42fde
Added warning on README.md (#376) 2021-05-10 09:32:10 -07:00
Brian Hoang 56661a4233
Fix: Resize Cluster (#371)
* Added resize cluster

* Added fix for autoscale file
2020-10-27 09:19:21 -07:00
Brian Hoang d206fd68c2
Added github authentication package in pool installation (#365) 2019-08-13 09:55:24 -07:00
Brian Hoang 9e9b4942f4
Release: v0.8.0 (#357) 2019-06-20 14:08:27 -07:00
Brian Hoang 96bfc22662
Fix: Upgrading to R Batch SDK to 2018-12-01.8.0 (#354)
* Added resource files

* Added resource files

* Removed comments

* Fixed resource files documentation

* Added check on job state

* Fixed jobState
2019-06-18 21:04:30 -07:00
Brian Hoang 93f3fbc6fd
v0.7.3 (#356) 2019-06-18 12:46:28 -07:00
Brian Hoang a2154d2115 Update pipeline.yml for Azure Pipelines 2019-04-16 13:57:01 -07:00
Brian Hoang 975858072e
Fix: Test Coverage on Azure Pipeline CI (#348)
* Added build.sh

* Fixed tests

* Added pipeline yml

* Fixed pipeline

* Removed

* Passing in args to script

* Added container image

* Fixed args

* Fixed args

* Fixed args

* Removed last script

* Added test management

* Added job dependency

* Moved package installation to build.sh

* fixed

* Added job dependency

* Added RProfile site

* Fixed REnvironment

* Added Rprofile

* Added ~/

* Fixing tests

* fixed method name

* Renaming samples & tests

* renamed more tests

* Fixed lint

* Removed other tests

* Fixed directory call for testthat

* Added typo and remove sample

* Fixed pipeline pointer
2019-02-13 21:36:40 -08:00
Brian Hoang 372e382048
Fix: Revert Cluster Setup File (#342)
* Reverted changes of cluster setup

* Reverted cluster setup file
2019-02-07 12:26:20 -08:00
Søren Vind ec1a4df838 Bugfix: Don't break when fetching batch-insights (#340)
Spell batch-insights correctly when fetching file. The bug causes pools orchestrated by doAzureParallel to fail with error TS_STATUS_TVM_STARTUP_TASK_FAILED (and all jobs running in these pools to fail).
2019-02-06 13:38:08 -08:00
Brian Hoang 31eec56655
Feature: Batch Insights support (#336)
* Added App-Insight Support

* Fixed cluster cluster setup

* mend

* Working App Insights support

* Added docs

* Fixed link to main BatchExplorer page
2019-02-04 18:45:03 -08:00
Brian Hoang 82c149a609
Added documentation for containerImage (#339) 2019-02-01 11:23:48 -08:00
Brian Hoang 40b74da14c
Added fix for cluster of autoscale node 0 (#337) 2019-01-17 13:31:49 -08:00
angusrtaylor 6d14d4522b Minor documentation fixes (#331)
* fix setHttpTraffic documentation

* corrected job error troubleshooting link

* updated getJobFile man page to reflect actual taskID naming

* fixed broken link to managing storage
2018-11-26 11:00:47 -08:00
Brian Hoang 975d68e47b
Fix: Remove unnecessary apt packages installation on job preparation task (#321)
* Added cluster setup command

* Fixed 404 content not found

* Fixed cluster setup message

* Removed apt-get install

* Removed apt zip packages

* Reversed hunk
2018-11-06 08:00:14 -08:00
Brian Hoang 7192e08f77
Feature: Added Queue/Running Autoscale Formula (#316)
* Added autoscale for queue and running

* Updated documentation from comments
2018-10-16 09:05:55 -07:00
Brian Hoang 844ebde125
Release: v0.7.2 (#317)
* Updated DESCRIPTION version

* Updated CHANGELOG.md to v0.7.2
2018-10-08 10:18:28 -07:00
Brian Hoang 96081cca9a
Fix: File share sample (#312)
* Fixed sample

* Removed unchanged file name

* removed account

* Removed custom script
2018-09-18 14:44:00 -07:00
Brian Hoang 81dcb72fbb
Fix dependency on enum being uppercase (#310) 2018-09-13 11:36:13 -07:00
Brian Hoang 4020a93aad
Added github branch installation (#302) 2018-09-12 13:04:08 -07:00
Brian Hoang 1d26dd8749
Fix: Documentation typos and fixes (#307)
* Fixed typos on getting started and cluster methods

* Fixed getCluster test - Remove failed case (Autoscale down to 0)

* Fixed indentation of azure-requirements.md
2018-09-12 11:41:52 -07:00
Brian Hoang b9ffe3e2e4
Added docs (#298) 2018-08-20 11:52:03 -07:00
Brian Hoang b97f447ca2
Feature: Add Batch Service Built-In Container support (#291)
* Replaced Virtual Configuration

* Added containerSettings in addTask helper function

* Using new Dockerfile with blobxfer and R

* Removed container settings

* Fixed containerConfiguration lintr

* Fixed description dependency

* Fixed cluster setting

* Fixed R packages installation on pool level
2018-08-14 15:34:50 -07:00
Brian Hoang ce263e78bd
Fix Azure foreach options documentation (#288) 2018-07-13 16:24:32 -07:00
Brian Hoang ad7acf1c33
Added 0.7.1 changelog version (#286) 2018-07-13 15:18:34 -07:00
Brian Hoang 737bf498e8
CHANGELOG for v0.7.1 (#285) 2018-07-13 15:13:03 -07:00
Brian Hoang 2b8f388dc4
Fix: Updating Persistent Storage Documentation (#283)
* Switched to R6 client

* Replaced createContainer function
2018-06-27 11:10:53 -07:00
Brian 8e39df1b6f
Fix: Updated MaxTasksPerNode documentation (#279)
* Added comment on maxTasksPerNode

* Added bolded note

* After comments
2018-06-06 23:04:30 -07:00
Brian f35e1e371f
Fixed package strip name (#278) 2018-05-31 16:21:21 -07:00
Brian b24f20c1f1
Switched to R6 sas client (#276)
* Switched to R6 sas client

* Added storage endpoint suffix
2018-05-18 11:03:43 -07:00
Brian 4983fb120e
Tests/r (#275)
* Added install R

* Added devtools build

* devtools build and test

* Clean up rscript

* Added line breaks

* Added devtools('.')

* Added testthat package

* Added roxygen

* Replaced rscript

* Test live

* Added environment variables to test

* Fixed test

* Removed

* Fixed tests

* makeClusters to makeCluster

* Error handling to stop exit

* Added params to setup function

* Removed pool names

* Get / Get Cluster List

* Added utility R source

* Fixed tests

* Fixed remove error handling with combine test

* Forgot \ lines
2018-05-17 11:49:38 -07:00
Gopi Kumar 008b0ad46d Clarifying comment on DSVM (#274) 2018-05-17 09:39:45 -07:00
Brian f418cd972e
Documentation rewrite (#273)
* Renamed operations

* Fixing docs

* Removed stuff from README.md

* Fixed links for TOC

* Added descriptions for TOC

* Major renaming of files

* Added TOC to main README.md

* Added low pri link

* Added link to vm priority

* Fix broken links

* Added Notable features
2018-05-15 16:22:11 -07:00
Brian 20c86f16ed
Feature/custom package (#272)
* Added custom package script

* Added feature custom download

* Fixed typo

* Fixed directory for installation

* Fixed full folder directory

* Add dependencies and fix pattern

* Fix pattern not found

* Added repo

* Switching to devtools

* Fixing devtools install with directory

* Fix in for merger.R

* Working cluster custom packages

* Removed printed statements

* Working on custom docs

* Custom packages sample docs

* Fixed typo in azure files typo

* Fixed typos based on PR
2018-05-14 13:47:00 -07:00
Brian d02599de37
Fixed output (#270) 2018-05-11 09:33:49 -07:00
Brian 23079f5b6f
Replaced deprecated function (#269) 2018-05-09 16:17:33 -07:00
Brian 84aa7c93f0
Fix/storage management (#267)
* Removed rAzureBatch from storage api calls

* Fixed quota documentation

* Added job and core quota limits
2018-05-07 09:38:03 -07:00
zfengms 6582af49e2
add sharedKey to credentials related code and doc (#266) 2018-05-03 10:49:13 -07:00
zfengms 81a7c16063
Fix/getstartdoc (#263)
* fix AAD credential config field names

* fix json format
2018-05-02 14:59:07 -07:00
Brian a28e74e8ba
Added change log details (#258) 2018-05-02 13:19:13 -07:00
Brian 1fbb1c366f
Fixed resource files docs (#262) 2018-05-02 11:54:25 -07:00
Chris Auld b6fbcda5a9 Fixing change of named parameter in makeCluster (#259)
Parameter name looks to have changed. Fixing. There are still some issues that I will open a separate ticket for.
2018-04-30 09:40:57 -07:00
Brian 9dfa59925d
Fixed get workers count function (#261) 2018-04-30 09:16:14 -07:00
Brian 958d84f6db
Enable AAD and VNet Support (#252)
* Added config property for service principal

* Fixed property names for service principal

* Added makeBatchClient and makeStorageClient functions

* Added ARM calls

* Fixed configuration

* Added more working features for AAD auth

* Switched sas token generator

* Added storage client generate sas tokens into doAzureParallel

* basic foreach loop works

* Long running jobs with AAD validated

* Removed credentials output

* Added docs for vnets

* Fixed network configurations for doazp

* Replaced rAzureBatch namespace with batchClient

* Fixed url auth for storage

* Changed cluster parameter naming

* Renamed helper file and fixed lintr

* Wrong file name

* Removed new line

* Removed lowerCamelCase for R6 classes

* Fixed sas token

* Fixed createBlobUrl

* Fixed configuration endpoint suffix

* Fixed endpoint suffix for download merge results

* Added environment parameter in setCredentials

* Added default for endpoint suffix for svp

* Changed default credentials file to shared key

* Updated docs for sharedkey/serviceprincipal

* Updated documentation

* Broken test for doc example

* Fixed lintr for docs

* Updated version to 0.7.0
2018-04-27 17:43:06 -07:00
Brian 80ddceadfb
Updated version v0.6.3 (#256) 2018-04-27 17:25:56 -07:00
zfengms e1a3c14cdf
Feature/getstarted (#255)
* get started script

* add account_setup.sh

* fix typo

* fix typo

* support shared key

* fix typos

* retrieve batch/storage account keys

* fix bug

* typo

* fix if logic

* fix typo

* bug

* retrieve batch primary key

* storage list_keys

* storage keys

* storage key exceptin

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key\

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key

* storage key\

* storage key

* storage key

* storage key

* delete resource group

* print

* print

* print

* exit from delete rg

* delete resource group

* aad auth

* resource group name

* add docs for get started script

* update python script location

* update doc

* update doc

* update doc

* fix credential setting names

* fix credential setting names

* address review feedback
2018-04-27 11:43:36 -07:00
zfengms 0fbfd4cb07
Feature/pkgmgmtdoc (#231)
* merge package management doc

* merge packagement docs

* address review feedback (#232)

* address review feedback

* add reference to github and bioconductor packages in worker

* update package management sample

* update package management doc (#233)

* address review feedback

* add reference to github and bioconductor packages in worker

* update package management sample

* update package management doc

* remove cluster.json

* remove package installation
2018-04-26 00:50:38 -07:00
Pablo Selem fa75afbbd2
fix sample link to sas resource files (#254) 2018-04-23 12:29:30 -07:00
Pablo Selem 3b0c08742b
Sample - Add a sample for using SAS resource files (#253)
* resubmit sas resource files example

* fixed typos and grammar

* remove unnecessary github reference
2018-04-23 11:08:08 -07:00