microsoft
/
FluMapModel
зеркало из https://github.com/microsoft/FluMapModel.git
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Граф коммитов

  • f3a28db1ec
         Merge ac33702653 into 578a332fec dependabot[bot] 2023-11-02 21:06:52 +0000
  • ac33702653
         Bump pip from 18.1 to 23.3 in /api_service dependabot/pip/api_service/pip-23.3 dependabot[bot] 2023-11-02 21:06:51 +0000
  • 578a332fec
         Auto merge mandatory file pr master microsoft-github-policy-service[bot] 2023-06-27 13:00:12 +0000
  • f87cc895bf
         Microsoft mandatory file users/GitHubPolicyService/7b967fe5-6b84-4eaf-bc86-40bbfc07502b microsoft-github-policy-service[bot] 2023-06-12 19:27:55 +0000
  • 3da7a23857
         Microsoft mandatory file users/GitHubPolicyService/7ba1ef1d-11f4-4f47-b855-7583a5e090a0 microsoft-github-policy-service[bot] 2023-06-02 17:56:55 +0000
  • 2ead010d83
         Merge 6482e084bd into d93f8f1e6b dependabot[bot] 2022-12-26 20:47:09 +0000
  • 6482e084bd
         Bump wheel from 0.32.1 to 0.38.1 in /api_service dependabot/pip/api_service/wheel-0.38.1 dependabot[bot] 2022-12-26 20:47:07 +0000
  • df741c61ac
         Bump pip from 18.1 to 21.1 in /api_service dependabot[bot] 2021-11-15 17:48:23 +0000
  • cd685eae5b
         Bump pip from 18.1 to 19.2 in /api_service dependabot[bot] 2021-06-09 17:48:26 +0000
  • d93f8f1e6b
         Merge pull request #99 from seattleflu/famulare/clean-summer-chaos-toward-remaster Mike Famulare 2019-08-30 17:08:15 -0700
  • 223c1383c0 changed filename famulare 2019-08-31 00:06:07 +0000
  • f60db4fa16 closing #98 famulare 2019-08-31 00:03:29 +0000
  • 898d840c8e fixed bug in modelVisualizeR description that prevented loading the package. famulare 2019-08-30 22:42:39 +0000
  • c0c3024eeb Fixed performance issue in #71 famulare 2019-08-30 22:27:43 +0000
  • b42578ee99 gitnignore model_diagnostic_plots famulare 2019-08-30 20:15:23 +0000
  • 7f473db722 removing png famulare 2019-08-30 20:13:47 +0000
  • 126b6923bd organized scripts floating around repo famulare 2019-08-30 20:13:07 +0000
  • e1de76ecfe REFACTOR! modelVisualizeR replaces modelTestR. workflowTestR stub is set up to hold software testing on the incidence-mapper workflow. famulare 2019-08-30 19:41:00 +0000
  • 5e7ff167b5 removed obsolete files famulare 2019-08-30 19:22:57 +0000
  • a771b67578 delete outdated api examples famulare 2019-08-30 19:02:07 +0000
  • 4acce008a8
         Merge pull request #96 from seattleflu/master Mike Famulare 2019-08-30 11:54:36 -0700
  • 5eed51b9e1
         Merge pull request #95 from seattleflu/review_model_science Mike Famulare 2019-08-30 11:51:40 -0700
  • c5abd5f06f ignore cached data famulare 2019-08-30 18:45:03 +0000
  • 5ba62d50c3
         Update docker-compose.rstudio.yml Clinton Collins 2019-08-02 10:40:38 -0700
  • 48b00fa189 roy first commit for testing famulare 2019-08-02 17:20:12 +0000
  • 7288ed7b79 added missing packages to environment file famulare 2019-07-24 20:30:29 +0000
  • 6448fd5786 preparing branch for model science review famulare 2019-07-24 19:02:25 +0000
  • 28f6e4d8c3
         Merge pull request #93 from seattleflu/master Mike Famulare 2019-07-24 11:54:37 -0700
  • 1372b41a48
         Merge branch 'famulare/may-22-demo' into master Mike Famulare 2019-07-24 11:54:23 -0700
  • d8ee8a62f0 uploading scripts used for data reviews famulare 2019-07-24 18:43:14 +0000
  • 4a56af48e5 Fix swagger for query model Clinton Collins 2019-07-18 09:46:59 -0700
  • 41d3a95174 Add libxml2 as it is a dependency of roxygen Clinton Collins 2019-07-16 22:17:19 -0700
  • 905d81738c
         Merge pull request #89 from seattleflu/no-model-duplicates Clinton Collins 2019-07-16 21:17:58 -0700
  • b101f460a3 Integrate master Move to use models in alembic Clinton Collins 2019-07-16 17:39:09 -0700
  • f6fb724ed9 Merge branch 'master' of github.com:seattleflu/incidence-mapper into no-model-duplicates Clinton Collins 2019-07-16 15:30:15 -0700
  • 204a9faa88 Update gitignore Update documentation Clinton Collins 2019-07-14 23:02:46 -0700
  • e0e6a7bd5e Share run configurations Clinton Collins 2019-07-14 22:54:14 -0700
  • 06fd072cbb Update windows builder environment script to allow building of docker images as well Clinton Collins 2019-07-14 22:51:43 -0700
  • 7ce79c2d96 Create builder environment for windows Clinton Collins 2019-07-14 22:50:13 -0700
  • 361df44903 Updated design Clinton Collins 2019-07-14 22:49:16 -0700
  • 2d539fdba4 Updated Documentation Clinton Collins 2019-07-14 22:34:54 -0700
  • d367843b3a Add documentation around the configuration of the API service Clinton Collins 2019-07-14 21:48:44 -0700
  • 8072a1cd27 * Add CORS support * Simplify output of JWT tokens. This makes it easier to use in automated tasks * Ensure proper directories in Dockerfile * Use relative versions in setup.py Clinton Collins 2019-07-14 21:42:43 -0700
  • 08fd98f83e Improve layout of deploy_server Detail how to run use a local registry Update make to support local registry Clinton Collins 2019-07-14 19:44:45 -0700
  • 5f22ebdb30 Ensure we provide a value for NA and INF that can be parsed by most JSON engines Clinton Collins 2019-07-14 16:35:04 -0700
  • 71a20d8578 Merge remote-tracking branch 'origin/no-model-duplicates' into no-model-duplicates Clinton Collins 2019-07-08 23:56:09 -0700
  • f2a69b62a0 cleanup code Clinton Collins 2019-07-08 23:56:01 -0700
  • 8cd2773cb9 loadBingData moved to its own separate file, fixed effects plotted in its own function, add in diagnostic plots Grace Huynh 2019-06-10 15:02:10 -0700
  • 0a194527cb added ggplotDiagnosticPlots.R Olesya Melnichenko 2019-05-29 15:05:40 -0700
  • e9096c8e47 Fixed secuirty issues Clinton.Collins 2019-06-05 14:41:16 -0700
  • 34c6fd61ea added jwt tokens Clinton Collins 2019-06-05 07:25:39 -0700
  • c15e2114e6 Enable skipping errors Clinton Collins 2019-06-04 14:54:05 -0700
  • 15a766276c Add RDS to uploads Clinton Collins 2019-06-04 14:46:51 -0700
  • 99fe8a2def Remove dev server info for future deployments Clinton Collins 2019-06-04 14:46:15 -0700
  • 2136621c7c add help to top level makefile Clinton Collins 2019-06-04 14:45:34 -0700
  • 04bb7f097f Merge branches 'master' and 'no-model-duplicates' of github.com:seattleflu/incidence-mapper into no-model-duplicates Clinton Collins 2019-06-04 14:36:07 -0700
  • 634ad2e63d add fixed effects for simulated bing search queries Grace Huynh 2019-05-22 15:40:53 -0700
  • 5ff41586aa final scripts for review famulare 2019-05-22 05:37:18 +0000
  • fba5935dca updating for new data famulare 2019-05-22 02:05:40 +0000
  • 81b0cb8407 more progress on viz and models for presentation famulare 2019-05-21 23:57:07 +0000
  • 19d7120e22 changed all-negative test code to "undetected" famulare 2019-05-21 21:04:25 +0000
  • b5a75b2197 working build on real data with pathogen info famulare 2019-05-21 18:30:39 +0000
  • fe3f6f5821 Add flask_env Clinton Collins 2019-05-17 02:14:25 -0700
  • b233ffe29d added ability to do factor levels as replicates, and got vax efficacy development script close to build-ready famulare 2019-05-17 02:05:44 +0000
  • 849ce35b3d polishing vaccine efficacy models and deployment famulare 2019-05-17 00:29:32 +0000
  • fd303ec93a added flu vaccine efficacy model and script famulare 2019-05-16 23:55:29 +0000
  • ebb70a606c fixed `pathogen` bug in selectFromDb famulare 2019-05-16 23:54:45 +0000
  • 4ac4ea2b0b Add error for model executions Ensure model execution is more robust on first execution Clinton Collins 2019-05-16 16:46:34 -0700
  • 02a3edc983 Add model cleanup to migration Clinton Collins 2019-05-16 15:58:59 -0700
  • 81536f9997 Add option for workers and for repeat test to better perform as performance test as well as general model test Clinton Collins 2019-05-16 15:31:55 -0700
  • e413903f18 Depend on the index to detect duplicate models Clinton Collins 2019-05-16 15:21:42 -0700
  • ad24a414b7 Add db migration(will help with model migration) Update image to support db migration Add migration to add model_keys to help eliminate duplicates through indexing Clinton Collins 2019-05-16 15:21:06 -0700
  • 113e957912 fixed bug in age_row famulare 2019-05-16 19:39:51 +0000
  • af81f69d52
         Merge pull request #67 from seattleflu/master Mike Famulare 2019-05-16 11:39:59 -0700
  • 7a98661403 fixed storeRDS bug in saveModel. Long-term, this needs to be cleaned up #62 famulare 2019-05-16 18:08:21 +0000
  • f5f304edf7 fixed immediate bugs for `spatial_domain`. Long-term maintainability should be addressed #66. famulare 2019-05-16 17:11:27 +0000
  • d4529a42a5 Make test_all_models partially toward performance testing as well. Testing all models and calling the server alot are similar except how many times I want to call a model Add model duplicate detection Improve timing after model starts Clinton Collins 2019-05-16 10:02:19 -0700
  • 3a68886764 fixed bug introduced by fixing bug. famulare 2019-05-16 00:46:18 +0000
  • ac1f8c5821 fixed drop_na bug reported over slack by @olesya13 famulare 2019-05-16 00:18:41 +0000
  • 9df6ecdcd1 Ensure upload script has correct defult url Clinton.Collins 2019-05-15 14:41:13 -0700
  • 1a3df827e2 Don't add the local modelsdb to the container Clinton.Collins 2019-05-15 14:35:25 -0700
  • 82154f4125 Ensure on strings we do convert to dict before generating id Clinton.Collins 2019-05-15 14:33:49 -0700
  • 42404b0fc9 Add simple test for models. Need more comprehensive test later Clinton Collins 2019-05-13 17:52:20 -0700
  • 6ff21a9c9b Default example 404 on missing model Disable volume Clinton.Collins 2019-05-13 16:00:55 -0700
  • af357318b5 Change order lock file is created Change timing of server communitcation to be more fault tolerant Clinton.Collins 2019-05-13 15:26:26 -0700
  • 733523b28b Fix env config Clinton.Collins 2019-05-13 14:41:39 -0700
  • ced4eea2b3
         Merge pull request #64 from seattleflu/61_api_bugs Clinton Collins 2019-05-13 14:32:45 -0700
  • 4af1580b78 Add more details to description Add imports to description. Per R docs, we want to have these in both Description and the namespace file. Namespace is used when loading a package and will do imports. Description file is used during the install process and it is what is used to refer R to package dependencies Clinton.Collins 2019-05-13 14:27:39 -0700
  • 43f969c4ee Merge changes from master Clinton.Collins 2019-05-13 14:26:18 -0700
  • dfc367f1b5 Start of download script for models Clinton.Collins 2019-05-13 14:10:21 -0700
  • 8bedf1c63c #57 - Rename pathogen_models to generic_models #61 - Fix bugs with API queries through a) Lock System b) Shared Job/Server filesystem c) Query Caching d) realign model id functions(model type fields and spatial domain e) update swagger with corrected model types #63 - Add some stuff needed for future implementation of this through RDS filed is tsvs Clinton.Collins 2019-05-13 14:09:24 -0700
  • dbb532e146
         Merge pull request #62 from seattleflu/load-save-with-spatial_domain Clinton Collins 2019-05-13 14:08:46 -0700
  • 35adfdbacc Updates API Docs Clinton.Collins 2019-05-13 14:02:41 -0700
  • 74021be516 changed RDS file naming to match model definition. famulare 2019-05-11 02:19:59 +0000
  • 39beda26ac adding comment, and ready to close #56! famulare 2019-05-11 01:56:33 +0000
  • a7ab265281 Gotcha #56! famulare 2019-05-11 01:44:24 +0000
  • 0cc426d01b almost... famulare 2019-05-11 01:34:24 +0000
  • 7774a6744a still hunting #56 famulare 2019-05-11 01:28:58 +0000
  • 9f5a7c16be fixed human-readable name to have `spatial_domain` famulare 2019-05-11 01:17:49 +0000
  • 0fb515232f not sure how `simplifyDataFrame=` nothing ever worked... famulare 2019-05-11 01:09:10 +0000