Matt McLoughlin
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4c0f08eb14
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Update links to use public containers with HTTPS links
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2024-11-05 14:27:45 -08:00 |
Blair L Murri
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80532f1719
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Retain access to datasettestinputs
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2024-11-05 13:41:24 -08:00 |
Venkat Malladi
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9ce4ad45bb
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Merge pull request #8 from BMurri/patch-1
Update trigger file to use more recent WDL
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2024-06-25 07:50:56 -05:00 |
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Blair L Murri
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8865753123
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Update trigger file to use more recent WDL
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2024-06-22 17:46:13 -07:00 |
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Venkat Malladi
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14e5eaf8b9
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Merge pull request #7 from microsoft/vsmalladi-patch-2
Update gat4k docker image. Closes #6
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2024-05-30 11:44:05 -05:00 |
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Venkat Malladi
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04d51ddf9d
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Update gatk4-rna-best-practices.wdl
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2024-05-29 15:02:03 -05:00 |
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Venkat Malladi
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bd428b2612
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Update gatk4-rna-best-practices.wdl remove PrintGCTimeStamps
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2024-05-24 09:18:32 -05:00 |
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Venkat Malladi
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507acf2523
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Fix wdl task
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2024-05-21 13:35:04 -05:00 |
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Venkat Malladi
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b8f39df602
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Update gat4k docker image
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2024-05-13 20:28:58 -05:00 |
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Venkat Malladi
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a7cea1b34e
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Merge pull request #5 from microsoft/vsmalladi-patch-1
Update docker image
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2024-05-13 20:25:01 -05:00 |
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Venkat Malladi
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1d3dcb9ed9
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update to gcr docker image
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2024-05-13 12:53:25 -05:00 |
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Venkat Malladi
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dacd156ff4
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Update gatk4-rna-best-practices.wdl
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2024-05-13 12:28:04 -05:00 |
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Venkat Malladi
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6b5212ca28
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Update gatk4-rna-best-practices.wdl
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2024-05-13 12:04:02 -05:00 |
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Venkat Malladi
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51e8fa5a66
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Update docker image that was deprecated
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2024-05-13 11:27:12 -05:00 |
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Matt McLoughlin
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c65cb2faa1
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Increase memory of gtfToCallingIntervals task
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2024-03-07 14:54:48 -08:00 |
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Matt McLoughlin
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6a64468369
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Update gatk4-rna-best-practices.wdl
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2024-03-07 14:48:13 -08:00 |
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Matt McLoughlin
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1d3d3c647a
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Increase memory for gtfToCallingIntervals
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2024-03-07 14:27:29 -08:00 |
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Matt McLoughlin
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5720878f14
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Update gatk4-rna-best-practices.wdl
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2024-03-07 13:57:37 -08:00 |
Olesya Melnichenko
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c455b86475
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Initial commit (#1)
* Azure specific changes in runtime attributes
* Replaced data links by Azure paths, removed non-existing input parameters
* Updated README.md
* Initial commit for CODE_OF_CONDUCT.md and SECURITY.md
* Initial commit for trigger file
* Formatting - changed tab to spaces
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2021-06-07 22:07:50 -07:00 |
bshifaw
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c5fc93ea04
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added dockstore yml, changed tab to spaces in gtgtfToCallingIntervals task (#9)
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2021-05-10 11:25:51 -04:00 |
meganshand
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4657407af0
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Removing unused interval list in SplitNCigarReads (#8)
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2021-03-03 09:21:21 -05:00 |
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bshifaw
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b05565706b
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add set e to gtfToCallingIntervals (#6)
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2021-02-04 17:12:27 -05:00 |
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meganshand
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42d7bc013d
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Merge pull request #5 from gatk-workflows/ms_scatter
Error when interval list is empty and remove PairedRun from MBA
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2021-02-04 13:48:21 -05:00 |
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Megan Shand
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b52f2b8ed2
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removing deprecated PairedRun argument to MergeBamAlignment
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2021-02-03 10:55:15 -05:00 |
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Megan Shand
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2b76e22d18
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ScatterIntervalList now throws and error if there are 0 scattered interval lists created
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2021-02-03 10:53:58 -05:00 |
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bshifaw
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2619525452
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updated resource bundle link in readme (#4)
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2020-11-18 10:23:09 -05:00 |
Xiaofei (Carl) Zang
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ce1c7124d7
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debug - remove "=" for arguments (#3)
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2020-10-29 10:01:53 -04:00 |
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bshifaw
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44aec1ad93
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Updated 'Contact Us' message and GATK links (#2)
Updated 'Contact Us' message and GATK links
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2020-03-10 10:31:34 -04:00 |
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bshifaw
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32e27cff22
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Merge pull request #1 from gatk-workflows/mmt_updateGoogleBucketRefs
update google bucket references [DFE-6]
Looks good
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2019-12-19 16:31:20 -05:00 |
Morgan Taylor
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e65894f801
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update google bucket references
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2019-12-19 13:14:28 -05:00 |
Bhanu Gandham
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08c2babd7f
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Update README.md
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2019-09-12 10:10:29 -04:00 |
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Bhanu Gandham
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7ab17b969a
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update json to point to a uBAM instead of a BAM
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2019-09-12 10:09:59 -04:00 |
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Bhanu Gandham
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86bf6e8b94
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Added readme
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2019-08-27 14:26:57 -04:00 |
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Bhanu Gandham
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b950ebd65d
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Added the wdl and input json files
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2019-08-27 14:25:21 -04:00 |
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Bhanu Gandham
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e465476f99
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Initial commit
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2019-08-27 14:23:33 -04:00 |