A python library for intelligently building networks and network embeddings, and for analyzing connected data.
Перейти к файлу
Dax Pryce 92f86e385d
Update README.md
2024-07-11 11:49:18 -07:00
.github Update validate_on_push.yml 2022-10-13 14:11:56 -07:00
docs 0.1.8 release notes 2020-12-18 14:23:00 -08:00
notebooks Distance module refactor (#25) 2020-02-19 18:05:21 -08:00
tests Add test to verify union LCC during omnibus embedding 2020-12-09 11:42:46 -08:00
topologic As it turns out, DeprecatedWarning is ignored by default. I don't know why either, may as well just have a comment that says 'shove off' for all the good *that* does anyone 2022-10-11 20:37:49 +00:00
.gitattributes Initial commit 2020-02-10 11:30:24 -08:00
.gitignore Moved ari scores and reworked it. The similarity module now provides the ari function for use, which will compare 2 dictionaries of partition/clustering/community maps and provide an ARI score. This similarity module is a logical place for any future similarity algorithms that we may want to employ. 2020-02-19 11:59:34 -08:00
CODE_OF_CONDUCT.md Initial CODE_OF_CONDUCT.md commit 2020-02-06 12:44:40 -08:00
LICENSE Initial LICENSE commit 2020-02-06 12:44:41 -08:00
MANIFEST.in New version process (#14) 2020-02-12 12:28:53 -08:00
Makefile Turns out mypy has been quietly not running for (seemingly) months. We have errors in our unit tests. 2020-02-10 12:02:27 -08:00
README.md Update README.md 2024-07-11 11:49:18 -07:00
SECURITY.md Initial SECURITY.md commit 2020-02-06 12:44:43 -08:00
mypy.ini Missing typeshed hints for testfixtures and pytest 2020-02-10 12:02:27 -08:00
requirements.txt Initial commit 2020-02-10 11:30:24 -08:00
setup.cfg Initial commit 2020-02-10 11:30:24 -08:00
setup.py Modularity partitions (#41) 2020-05-06 13:51:54 -07:00

README.md

Topologic

Topologic is now Archived and Deprecated

Please use Graspologic instead.

Documentation Status PyPI

Release Status

Version 0.1.1 is released!

Installation Instructions

pip install topologic

Plans

  • None - see deprecation message above

Bugs or Feature Requests

Please file a new issue if you find any bugs, either in the code or the documentation.

Development Setup Instructions

Topologic was developed for Python 3.6+ and makes extensive use of type hints throughout and f-strings throughout. Python 2.7 is not supported.

Topologic is known to work with Python x64 3.6, 3.7, and 3.8 on Windows and Ubuntu, and presumed to work on MacOS as well. Please submit a new issue with any issues found on any of these versions.

Windows

py -m venv venv
venv\Scripts\activate.bat
pip install -U setuptools wheel pip
pip install -r requirements.txt

It is possible that you will need to install Visual Studio Build Tools for some of the topologic dependencies. Some dependencies such as scipy and numpy have C code that must be compiled for your version of Python to work. Please follow the directions in your console if you have errors after installing the requirements and then try again after following these instructions.

MacOS

python3 -m venv venv
source venv/bin/activate
pip install -U setuptools wheel pip
pip install -r requirements.txt

Ubuntu

sudo apt-get update && sudo apt-get install python3-pip python3-dev
python3 -m venv venv
source venv/bin/activate
pip install -U setuptools wheel pip
pip install -r requirements.txt

Running Tests

mypy ./topologic
mypy ./tests
flake8 ./topologic ./tests
pytest tests topologic

Contributing

This project welcomes contributions and suggestions. Most contributions require you to agree to a Contributor License Agreement (CLA) declaring that you have the right to, and actually do, grant us the rights to use your contribution. For details, visit https://cla.microsoft.com.

When you submit a pull request, a CLA-bot will automatically determine whether you need to provide a CLA and decorate the PR appropriately (e.g., label, comment). Simply follow the instructions provided by the bot. You will only need to do this once across all repositories using our CLA.

This project has adopted the Microsoft Open Source Code of Conduct. For more information see the Code of Conduct FAQ or contact opencode@microsoft.com with any additional questions or comments.

Privacy

topologic does not collect, store, or transmit any information of any kind back to Microsoft.

For your convenience, here is the link to the general Microsoft Privacy Statement.