6c09cace3a
SSL4EO: Add script to delete excess files ( #1425 )
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* SSL4EO: Add script to delete excess files
* Placate black
2023-06-18 11:36:15 -05:00
b4758a732a
Improve CI concurrency robustness ( #1423 )
2023-06-16 20:50:42 -05:00
b168cae22a
Revert "Gather GitHub context"
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This reverts commit 38a9bb4579
2023-06-16 17:56:32 -05:00
38a9bb4579
Gather GitHub context
2023-06-16 17:54:53 -05:00
ae3a4cb3a2
NLCD: support future product versions ( #1397 )
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* NLCD: support future product versions
* Limit string replace
* Limit in one more place
2023-06-15 13:14:10 -05:00
1ad8caa754
SSL4EO-L: add reproducibility instructions ( #1416 )
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* Create landsat subdirectory
* Python scripts in superdirectory now
* Add README
2023-06-15 11:58:43 -05:00
2ba9207647
Bump lightly from 1.4.7 to 1.4.8 in /requirements ( #1414 )
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Bumps [lightly](https://github.com/lightly-ai/lightly ) from 1.4.7 to 1.4.8.
- [Release notes](https://github.com/lightly-ai/lightly/releases )
- [Commits](https://github.com/lightly-ai/lightly/compare/v1.4.7...v1.4.8 )
---
updated-dependencies:
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dependency-type: direct:production
update-type: version-update:semver-patch
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2023-06-13 21:04:30 -05:00
0eb86c7731
Bump pytest from 7.3.1 to 7.3.2 in /requirements ( #1411 )
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* Bump pytest from 7.3.1 to 7.3.2 in /requirements
Bumps [pytest](https://github.com/pytest-dev/pytest ) from 7.3.1 to 7.3.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases )
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst )
- [Commits](https://github.com/pytest-dev/pytest/compare/7.3.1...7.3.2 )
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* pytest fixed some type hints
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-13 03:22:21 +00:00
02b8aeb80b
Bump pyproj from 3.5.0 to 3.6.0 in /requirements ( #1410 )
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Bumps [pyproj](https://github.com/pyproj4/pyproj ) from 3.5.0 to 3.6.0.
- [Release notes](https://github.com/pyproj4/pyproj/releases )
- [Changelog](https://github.com/pyproj4/pyproj/blob/main/docs/history.rst )
- [Commits](https://github.com/pyproj4/pyproj/compare/3.5.0...3.6.0 )
---
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dependency-type: direct:production
update-type: version-update:semver-minor
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2023-06-13 03:16:24 +00:00
ed3f7a2d01
Bump pyupgrade from 3.4.0 to 3.6.0 in /requirements ( #1409 )
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Bumps [pyupgrade](https://github.com/asottile/pyupgrade ) from 3.4.0 to 3.6.0.
- [Commits](https://github.com/asottile/pyupgrade/compare/v3.4.0...v3.6.0 )
---
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dependency-type: direct:production
update-type: version-update:semver-minor
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2023-06-13 03:15:43 +00:00
7e894fd524
Bump actions/checkout from 3.5.2 to 3.5.3 ( #1408 )
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Bumps [actions/checkout](https://github.com/actions/checkout ) from 3.5.2 to 3.5.3.
- [Release notes](https://github.com/actions/checkout/releases )
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md )
- [Commits](https://github.com/actions/checkout/compare/v3.5.2...v3.5.3 )
---
updated-dependencies:
- dependency-name: actions/checkout
dependency-type: direct:production
update-type: version-update:semver-patch
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2023-06-13 03:13:45 +00:00
06f91f7fbb
Minor updates to Landsat band plots ( #1396 )
2023-06-09 13:00:27 -05:00
2f0458db44
Bump lightning from 2.0.2 to 2.0.3 in /requirements ( #1406 )
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* Bump lightning from 2.0.2 to 2.0.3 in /requirements
Bumps [lightning](https://github.com/Lightning-AI/lightning ) from 2.0.2 to 2.0.3.
- [Release notes](https://github.com/Lightning-AI/lightning/releases )
- [Commits](https://github.com/Lightning-AI/lightning/compare/2.0.2...2.0.3 )
---
updated-dependencies:
- dependency-name: lightning
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update datamodule base class
* Check attributes first
* Fix remaining type hints
* More fixes
* Try again
* Try casting
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-08 04:11:19 +00:00
072839410b
Bump lightly from 1.4.6 to 1.4.7 in /requirements ( #1405 )
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Bumps [lightly](https://github.com/lightly-ai/lightly ) from 1.4.6 to 1.4.7.
- [Release notes](https://github.com/lightly-ai/lightly/releases )
- [Commits](https://github.com/lightly-ai/lightly/compare/v1.4.6...v1.4.7 )
---
updated-dependencies:
- dependency-name: lightly
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2023-06-07 22:27:31 +00:00
e53e9b0ba2
SSL4EO-L Benchmark ETM+: copy nodata pixels from img to mask ( #1400 )
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* SSL4EO-L Benchmark ETM+: copy nodata pixels from img to mask
* black fix
* Simpler bounds
* Update checksums
2023-06-07 16:36:00 -05:00
40b21fe7f4
SSL4EO-L Benchmark configs: remove class weights ( #1401 )
2023-06-05 16:42:31 -05:00
9e57f27818
CDL/NLCD/SSL4EO: allow selection of classes ( #1392 )
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* CDL/NLCD/SSL4EO: allow selection of classes
* 0 is already 0
* Get NLCD tests to pass
* Search recursively for NLCD files
* Update CDL
* Update SSL4EO-L Benchmark
* Passing tests
* Test SSL4EO-L Benchmark
* Test CDL
* Test NLCD
* Mypy fix
* Remove debugging code
2023-06-04 08:21:05 -07:00
3d436d3057
Define data augmentations for benchmark tasks ( #1382 )
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* define data augmentations for benchmark tasks
* updated probs
* merge main and fix tests
* revert unnecessary squeeze
* final augmentations
* more fixes
* Fix tests
* Better workaround
* Fix type hints
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-04 10:03:18 -05:00
99413397b8
Compute class imbalance ( #1389 )
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* Compute class imbalance
* Add --ignore-index flag
* Higher range
* Fix mypy
* Add flags to select subset and compute weights
* Fix --keep calculation
2023-06-04 10:02:05 -05:00
55a622f85c
Add config files for SSL4EO-L downstream tasks ( #1394 )
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* Add config files for L7 Irish and L8 Biome
* Add configs for SSL4EO-L Benchmark
2023-06-04 10:01:26 -05:00
4bede4d00f
Bump scikit-image from 0.21.0rc1 to 0.21.0 in /requirements ( #1391 )
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Bumps [scikit-image](https://github.com/scikit-image/scikit-image ) from 0.21.0rc1 to 0.21.0.
- [Release notes](https://github.com/scikit-image/scikit-image/releases )
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt )
- [Commits](https://github.com/scikit-image/scikit-image/compare/v0.21.0rc1...v0.21.0 )
---
updated-dependencies:
- dependency-name: scikit-image
dependency-type: direct:production
update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <support@github.com>
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2023-06-02 22:00:56 +00:00
51cdf363b5
Add copyright to files we forgot ( #1390 )
2023-06-02 16:07:22 -05:00
7bc19aea9d
fix downloading success check bug ( #1388 )
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* fix downloading success check bug
* fix downloading success check bug
* simplify fix
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-02 16:43:46 +00:00
0a564dd4b2
Adapt CDL cmap to match ordinal label mapping ( #1368 )
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* outline downstream dataset
* revert commit
* outline downstream dataset
* revert commit
* ordinal cmap and missing fig return
* Fix cmap
* I hate 0-indexed programming languages
* L7 Irish/L8 Biome: don't interpolate cmap
* list -> dict
* None means the default, which is antialiasing
* Undo changes to other datasets
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-02 11:29:23 -05:00
9e4f7d12d4
Improve customizability of Landsat band plots ( #1378 )
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* Improve customizability of Landsat band plots
* Better xlabel
* Display default values
* More band customization
* More band customization
* Fix ylim
* Fix vertical centering
* Fewer sensors
* flake8 fix
* usetex
* Shorter, simpler
* Wider thermal bands padding
2023-06-01 15:12:04 -05:00
02f2a6cb81
Add script to plot Landsat mission timeline ( #1383 )
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* Add script to plot Landsat mission timeline
* No range, present, mission
* usetex
* Thinner lines
* Shorter, simpler
2023-06-01 15:11:47 -05:00
c359c68b1a
GitHub Actions: disable macOS Python 3.11 cache ( #1387 )
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* GitHub Actions: disable macOS Python 3.11 cache
* Try ! in curly braces
2023-06-01 15:11:27 -05:00
114b4d1666
sample_ssl4eo: faster top 10K ( #1385 )
2023-06-01 12:50:13 -05:00
437638dde6
L7 Irish/L8 Biome: avoid interpolation of masks ( #1373 )
2023-05-30 21:08:15 -05:00
e7a1370ecf
DFC2022: avoid interploation in colormap ( #1372 )
2023-05-30 21:07:50 -05:00
46ecb7fe7c
Bump actions/setup-python from 4.6.0 to 4.6.1 ( #1380 )
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Bumps [actions/setup-python](https://github.com/actions/setup-python ) from 4.6.0 to 4.6.1.
- [Release notes](https://github.com/actions/setup-python/releases )
- [Commits](https://github.com/actions/setup-python/compare/v4.6.0...v4.6.1 )
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <support@github.com>
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2023-05-29 16:50:45 +00:00
a4a873b945
Bump pandas from 2.0.1 to 2.0.2 in /requirements ( #1381 )
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Bumps [pandas](https://github.com/pandas-dev/pandas ) from 2.0.1 to 2.0.2.
- [Release notes](https://github.com/pandas-dev/pandas/releases )
- [Commits](https://github.com/pandas-dev/pandas/compare/v2.0.1...v2.0.2 )
---
updated-dependencies:
- dependency-name: pandas
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-05-29 16:43:47 +00:00
de79658086
SSL4EO benchmark: fix cmap ( #1375 )
2023-05-29 11:30:01 -05:00
53a92ed4cf
NLCD: avoid interpolation, set vmin/vmax ( #1374 )
2023-05-29 11:29:38 -05:00
d131c8bda7
Test Python 3.11 ( #1180 )
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* Add Python 3.11 support
* Bump deps to Python 3.11 supporting versions
* Update scipy for Python 3.11 support
* Declare support for newer timm
2023-05-29 11:29:03 -05:00
108c94bb9b
Test fewer models in trainers to avoid exceeding RAM ( #1377 )
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* Stop the madness
* isort
* flake8
* Repeat for other trainers
* Parentheses not needed
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-29 11:28:36 -05:00
38f59d1efe
L8 Biome: clarify dataset description ( #1371 )
2023-05-27 14:39:30 -05:00
e3d8bc7716
Fix ETM_SR benchmark dataset ( #1370 )
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* outline downstream dataset
* revert commit
* outline downstream dataset
* revert commit
* update md5sum
2023-05-25 16:33:47 -05:00
c4fdd63cb2
Ensure that all plot methods return figure ( #1369 )
2023-05-25 10:47:21 -05:00
22ee95226f
SSL4EO Landsat Downstream Dataset/module CDL, NLCD ( #1338 )
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* outline downstream dataset
* revert commit
* outline of downstream dataset
* some work
* add test data
* run black
* add plot method
* new naming scheme
* fix unit tests
* add datamodule
* requested changes
* remove comments
* EOF
* battle against red circle
* fix failing tests
* add train val test split
* huggingface support
* fix failing trainer test
* running version of datamodule with trainer
* requested changes
* rename datamodules
* add colormap
* outline downstream dataset
* revert commit
* requested changes
* pass tests
* requested changes
2023-05-25 10:12:48 +02:00
2d576d915f
Add year filter functionality CDL ( #1337 )
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* add year functionality CDL
* requested changes and test coverage
* removesuffix clearer than strip
* recursive file verify
* Fix versionadded syntax
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-25 08:25:46 +02:00
ded347e17b
Bump pytest-cov from 4.0.0 to 4.1.0 in /requirements ( #1366 )
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Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov ) from 4.0.0 to 4.1.0.
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst )
- [Commits](https://github.com/pytest-dev/pytest-cov/compare/v4.0.0...v4.1.0 )
---
updated-dependencies:
- dependency-name: pytest-cov
dependency-type: direct:production
update-type: version-update:semver-minor
...
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2023-05-24 21:25:07 -05:00
ddb4ab3de9
Bump fiona from 1.9.4 to 1.9.4.post1 in /requirements ( #1365 )
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Bumps [fiona](https://github.com/Toblerity/Fiona ) from 1.9.4 to 1.9.4.post1.
- [Release notes](https://github.com/Toblerity/Fiona/releases )
- [Changelog](https://github.com/Toblerity/Fiona/blob/master/CHANGES.txt )
- [Commits](https://github.com/Toblerity/Fiona/compare/1.9.4...1.9.4.post1 )
---
updated-dependencies:
- dependency-name: fiona
dependency-type: direct:production
update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <support@github.com>
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2023-05-24 21:24:28 -05:00
d37af7362d
L8 Biome: update for new dataset format ( #1356 )
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* L8 Biome: update for new dataset format
* Fix bug in fake data generation
2023-05-24 21:24:01 -05:00
f39416b15c
L7 Irish: update for new dataset format ( #1355 )
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* L7 Irish: update for new dataset format
* Fix bug in fake data generation
2023-05-24 21:23:10 -05:00
e4fb97233b
Bump nbsphinx from 0.9.1 to 0.9.2 in /requirements ( #1367 )
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Bumps [nbsphinx](https://github.com/spatialaudio/nbsphinx ) from 0.9.1 to 0.9.2.
- [Release notes](https://github.com/spatialaudio/nbsphinx/releases )
- [Changelog](https://github.com/spatialaudio/nbsphinx/blob/master/NEWS.rst )
- [Commits](https://github.com/spatialaudio/nbsphinx/compare/0.9.1...0.9.2 )
---
updated-dependencies:
- dependency-name: nbsphinx
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-05-24 21:40:46 +00:00
7a213d1932
CDL ordinal label map ( #1364 )
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* outline downstream dataset
* revert commit
* add ordinal label mapping to cdl
* change docstring
2023-05-24 18:59:31 +00:00
0f500cb69e
Adjust naming scheme for SSL4EO dataset ( #1362 )
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* outline downstream dataset
* revert commit
* fix naming scheme
2023-05-24 13:38:59 -05:00
bc333266ff
GASSL ResNet50 Weights ( #1325 )
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* add gassl weights
* add transforms and update docs
2023-05-24 08:42:20 -07:00
71ffe1ab83
MoCo/SimCLR: better default lr ( #1363 )
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* MoCo/SimCLR: better default lr
* New MoCo v3 lr
2023-05-24 10:04:25 -05:00
Adam J. Stewart
dependabot[bot]
Nils Lehmann
Yi Wang
Caleb Robinson
Isaac Corley