ec9ffca5ba
Fix typos, 'Falsificaton' -> 'Falsification'
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Signed-off-by: Jon Cowie <jonlives@gmail.com>
2024-06-05 08:43:43 -07:00
fa1e7fcedb
Add RankBasedAnomalyScorer as an anomaly scorer
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This is very closely related to the RescaledMedianCDFQuantileScorer but a statistically more well-defined approach. However, it is also slightly more conservative for small sample sizes.
Furthermore, it changes the way equal samples are counted in MedianCDFQuantileScorer by also including the test sample itself. This prevents a p-value of 0.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2024-06-04 08:11:40 -07:00
e483c8bb67
docs: add rahulbshrestha as a contributor for code ( #1195 )
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* docs: update CONTRIBUTING.md [skip ci]
* docs: update .all-contributorsrc [skip ci]
---------
Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
2024-06-04 15:51:12 +05:30
72e3ba055e
Vectorize operations for propensity score matching ( #1179 )
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* Add vector operations
Added todo comment
Signed-off-by: Rahul Shrestha <rahulshrestha0101@gmail.com>
formatting fix
Signed-off-by: Rahul Shrestha <rahulshrestha0101@gmail.com>
bug fix with string name
Signed-off-by: rahulbshrestha <rahulshrestha0101@gmail.com>
* Vectorize remaining list
Signed-off-by: rahulbshrestha <rahulshrestha0101@gmail.com>
---------
Signed-off-by: rahulbshrestha <rahulshrestha0101@gmail.com>
2024-06-04 15:50:40 +05:30
5d8fdd0992
Add a modified version of the auto MPG dataset ( #1190 )
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Before, we were loading it directly from the UCI dataset repository. However, this cause connection issues and build fails. The dataset is now added directly with its respective license.
Further, removed the output of the causal discovery example notebook to ensure that it gets compiled while building.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2024-06-04 15:36:59 +05:30
62ea326372
Replacing numpy repmat with tile
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NumPy matlib has been deprecated. Replacing the usage accordingly.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2024-05-29 08:31:32 -07:00
38aee63904
Small correction of average p-value merger
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Before, a single p-value still got adjusted using the 2 * ... formula, which led to an unnecessary adjustment.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2024-05-29 08:31:18 -07:00
ff068cc497
Update dowhy_causal_discovery_example.ipynb ( #1186 )
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fix variable name for sachs data set
Signed-off-by: Christoph <krz@users.noreply.github.com>
2024-05-22 11:28:12 -07:00
1cef2ac070
docs: add victor5as as a contributor for code ( #1189 )
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* docs: update CONTRIBUTING.md [skip ci]
* docs: update .all-contributorsrc [skip ci]
---------
Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
2024-05-21 10:54:26 -07:00
63dea3356e
Code for Multiply-Robust Causal Change Attribution ( #1183 )
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Add distribution_change_robust method
Adding a new distribution change method that more robust and converges faster. However, it does not support all kind of set functions. Currently, it supports mean and variance attributions.
Based on the paper:
Quintas-Martinez, V., Bahadori, M. T., Santiago, E., Mu, J., Janzing, D., and Heckerman, D. Multiply-Robust Causal Change Attribution, Proceedings of the 41st International Conference on Machine Learning, Vienna, Austria. PMLR 235, 2024.
Signed-off-by: Víctor Quintas-Martínez <vquintas@mit.edu>
2024-05-21 10:35:35 -07:00
3660325a18
Bump requests from 2.31.0 to 2.32.0 ( #1187 )
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---
updated-dependencies:
- dependency-name: requests
dependency-type: indirect
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-21 07:31:24 -07:00
d2962dd186
Modify graphviz installation command ( #1178 )
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Modify graphviz installation command in README.rst, contributing-code.rst, and install.rst. Solves https://github.com/py-why/dowhy/issues/1172
Signed-off-by: Harsh Sinha <harsh.sinha@pitt.edu>
2024-05-15 08:28:11 -07:00
333c9a8afa
Bump werkzeug from 3.0.1 to 3.0.3 ( #1174 )
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Bumps [werkzeug](https://github.com/pallets/werkzeug ) from 3.0.1 to 3.0.3.
- [Release notes](https://github.com/pallets/werkzeug/releases )
- [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst )
- [Commits](https://github.com/pallets/werkzeug/compare/3.0.1...3.0.3 )
---
updated-dependencies:
- dependency-name: werkzeug
dependency-type: indirect
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-06 18:34:51 -07:00
c7a3681a9c
Bump jinja2 from 3.1.3 to 3.1.4 ( #1175 )
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Bumps [jinja2](https://github.com/pallets/jinja ) from 3.1.3 to 3.1.4.
- [Release notes](https://github.com/pallets/jinja/releases )
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst )
- [Commits](https://github.com/pallets/jinja/compare/3.1.3...3.1.4 )
---
updated-dependencies:
- dependency-name: jinja2
dependency-type: indirect
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-06 18:33:33 -07:00
35ae6aaabe
Bump tqdm from 4.66.1 to 4.66.3 ( #1173 )
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Bumps [tqdm](https://github.com/tqdm/tqdm ) from 4.66.1 to 4.66.3.
- [Release notes](https://github.com/tqdm/tqdm/releases )
- [Commits](https://github.com/tqdm/tqdm/compare/v4.66.1...v4.66.3 )
---
updated-dependencies:
- dependency-name: tqdm
dependency-type: direct:production
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Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-05-04 22:15:17 +05:30
517a9eb587
Use numpy tile instead of matrix ( #1170 )
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Signed-off-by: zethson <lukas.heumos@posteo.net>
2024-05-04 22:14:39 +05:30
a65d3d5c56
model name change
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Signed-off-by: Rahul Shrestha <rahulshrestha0101@gmail.com>
2024-05-03 12:35:01 -07:00
2cd8e8147b
docs: add dw-610 as a contributor for code ( #1166 )
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* docs: update CONTRIBUTING.md [skip ci]
* docs: update .all-contributorsrc [skip ci]
---------
Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
2024-04-22 21:37:14 +05:30
7aa5b2bdce
Bump aiohttp from 3.9.2 to 3.9.4 ( #1162 )
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Bumps [aiohttp](https://github.com/aio-libs/aiohttp ) from 3.9.2 to 3.9.4.
- [Release notes](https://github.com/aio-libs/aiohttp/releases )
- [Changelog](https://github.com/aio-libs/aiohttp/blob/master/CHANGES.rst )
- [Commits](https://github.com/aio-libs/aiohttp/compare/v3.9.2...v3.9.4 )
---
updated-dependencies:
- dependency-name: aiohttp
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-04-18 23:18:38 -07:00
2c4734867c
updated formatting
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Signed-off-by: Amit Sharma <amit_sharma@live.com>
2024-04-15 07:01:10 -07:00
100a65cf89
fixed argument calling bug
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Signed-off-by: Amit Sharma <amit_sharma@live.com>
2024-04-15 07:01:10 -07:00
f0ca30925e
Add new statistical method to merge p-values
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This uses an improved version of the "twice the average" rule following recent results from M. Gasparini, R. Wang, and A. Ramdas, *Combining exchangeable p-values*, arXiv 2404.03484, 2024.
This new method is now used by default when merging p-values. Accordingly, the quantile based method was renamed to be more consistent with the naming pattern.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2024-04-15 06:58:38 -07:00
c6c11933b6
Bump peaceiris/actions-gh-pages from 3 to 4
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Bumps [peaceiris/actions-gh-pages](https://github.com/peaceiris/actions-gh-pages ) from 3 to 4.
- [Release notes](https://github.com/peaceiris/actions-gh-pages/releases )
- [Changelog](https://github.com/peaceiris/actions-gh-pages/blob/main/CHANGELOG.md )
- [Commits](https://github.com/peaceiris/actions-gh-pages/compare/v3...v4 )
---
updated-dependencies:
- dependency-name: peaceiris/actions-gh-pages
dependency-type: direct:production
update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <support@github.com>
2024-04-15 06:57:44 -07:00
d33a22ff66
Bump idna from 3.6 to 3.7
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Bumps [idna](https://github.com/kjd/idna ) from 3.6 to 3.7.
- [Release notes](https://github.com/kjd/idna/releases )
- [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst )
- [Commits](https://github.com/kjd/idna/compare/v3.6...v3.7 )
---
updated-dependencies:
- dependency-name: idna
dependency-type: indirect
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Signed-off-by: dependabot[bot] <support@github.com>
2024-04-12 08:09:27 -07:00
bbf4c9b195
Adjust format based on new formatter version
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The new black formatter version (24.3.0) requires new changes, which are addressed in this commit.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2024-04-12 08:07:21 -07:00
74e51c37d8
[DOC] tiny improvements ( #1152 )
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Signed-off-by: yogabonito <yogabonito@users.noreply.github.com>
2024-04-07 01:31:21 -07:00
eb2396756e
Bump pillow from 10.2.0 to 10.3.0 ( #1154 )
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Bumps [pillow](https://github.com/python-pillow/Pillow ) from 10.2.0 to 10.3.0.
- [Release notes](https://github.com/python-pillow/Pillow/releases )
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst )
- [Commits](https://github.com/python-pillow/Pillow/compare/10.2.0...10.3.0 )
---
updated-dependencies:
- dependency-name: pillow
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-04-07 01:30:25 -07:00
65f3031bb1
Replace all occurrences of get Pandas' get_dummies() with skLearn OneHotEncoder ( #1135 )
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* For consistency and avoidance of future issues, replace all occurrences of Pandas' get_dummies with skLearn's OneHotEncoder. Encoder lifespan: Reuses encoders for new estimate_effect() calls, and replaces existing encoders on CausalEstimator.fit(). Additional uses of get_dummies without side-effects or consistent encoding issues in do-Sampler Propensity Scores utilities also replaced for consistency.
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
* Add categorical encoding consistency tests for CausalEstimators. Fix bug in arg order for RegressionEstimator._do().
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
---------
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
Co-authored-by: DAVID RAWLINSON <dave@causalwizard.app>
2024-03-26 22:03:17 +05:30
dfbbbca369
Fix small typo in user guide ( #1129 )
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Signed-off-by: Hongyu Lin <67950264+hon-gyu@users.noreply.github.com>
2024-02-09 01:43:21 -08:00
931b0280da
Bump aiohttp from 3.9.1 to 3.9.2
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Bumps [aiohttp](https://github.com/aio-libs/aiohttp ) from 3.9.1 to 3.9.2.
- [Release notes](https://github.com/aio-libs/aiohttp/releases )
- [Changelog](https://github.com/aio-libs/aiohttp/blob/master/CHANGES.rst )
- [Commits](https://github.com/aio-libs/aiohttp/compare/v3.9.1...v3.9.2 )
---
updated-dependencies:
- dependency-name: aiohttp
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
2024-01-30 07:48:40 -08:00
46f429eaed
Bump pillow from 10.1.0 to 10.2.0
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Bumps [pillow](https://github.com/python-pillow/Pillow ) from 10.1.0 to 10.2.0.
- [Release notes](https://github.com/python-pillow/Pillow/releases )
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst )
- [Commits](https://github.com/python-pillow/Pillow/compare/10.1.0...10.2.0 )
---
updated-dependencies:
- dependency-name: pillow
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
2024-01-30 07:48:24 -08:00
7b499b46f6
Bump jupyterlab from 4.0.9 to 4.0.11
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Bumps [jupyterlab](https://github.com/jupyterlab/jupyterlab ) from 4.0.9 to 4.0.11.
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases )
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/@jupyterlab/lsp@4.0.11/CHANGELOG.md )
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.0.9...@jupyterlab/lsp@4.0.11 )
---
updated-dependencies:
- dependency-name: jupyterlab
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
2024-01-30 07:48:14 -08:00
86d7dcbe29
Bump notebook from 7.0.6 to 7.0.7
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Bumps [notebook](https://github.com/jupyter/notebook ) from 7.0.6 to 7.0.7.
- [Release notes](https://github.com/jupyter/notebook/releases )
- [Changelog](https://github.com/jupyter/notebook/blob/@jupyter-notebook/tree@7.0.7/CHANGELOG.md )
- [Commits](https://github.com/jupyter/notebook/compare/@jupyter-notebook/tree@7.0.6...@jupyter-notebook/tree@7.0.7 )
---
updated-dependencies:
- dependency-name: notebook
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
2024-01-30 07:47:46 -08:00
01ad12aa35
Bump jupyter-lsp from 2.2.1 to 2.2.2 ( #1137 )
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Bumps [jupyter-lsp](https://github.com/jupyter-lsp/jupyterlab-lsp ) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/jupyter-lsp/jupyterlab-lsp/releases )
- [Changelog](https://github.com/jupyter-lsp/jupyterlab-lsp/blob/main/CHANGELOG.md )
- [Commits](https://github.com/jupyter-lsp/jupyterlab-lsp/commits )
---
updated-dependencies:
- dependency-name: jupyter-lsp
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-19 18:39:23 +05:30
df09897de5
Add nan check to kernel based independence test.
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Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2024-01-18 08:56:21 -08:00
499019c286
Bump jinja2 from 3.1.2 to 3.1.3
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Bumps [jinja2](https://github.com/pallets/jinja ) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/pallets/jinja/releases )
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst )
- [Commits](https://github.com/pallets/jinja/compare/3.1.2...3.1.3 )
---
updated-dependencies:
- dependency-name: jinja2
dependency-type: indirect
...
Signed-off-by: dependabot[bot] <support@github.com>
2024-01-16 09:05:24 -08:00
526d9280be
Bump abatilo/actions-poetry from 2.4.0 to 3.0.0
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Bumps [abatilo/actions-poetry](https://github.com/abatilo/actions-poetry ) from 2.4.0 to 3.0.0.
- [Release notes](https://github.com/abatilo/actions-poetry/releases )
- [Changelog](https://github.com/abatilo/actions-poetry/blob/master/.releaserc )
- [Commits](https://github.com/abatilo/actions-poetry/compare/v2.4.0...v3.0.0 )
---
updated-dependencies:
- dependency-name: abatilo/actions-poetry
dependency-type: direct:production
update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <support@github.com>
2024-01-16 09:05:04 -08:00
324c40fd8f
Update intro.rst ( #1133 )
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Update intro.rst
fix link
Signed-off-by: Jinyoung <40735154+diligejy@users.noreply.github.com>
2024-01-15 13:43:42 +05:30
b329e8cc79
Bump abatilo/actions-poetry from 2.3.0 to 2.4.0
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Bumps [abatilo/actions-poetry](https://github.com/abatilo/actions-poetry ) from 2.3.0 to 2.4.0.
- [Release notes](https://github.com/abatilo/actions-poetry/releases )
- [Changelog](https://github.com/abatilo/actions-poetry/blob/master/.releaserc )
- [Commits](https://github.com/abatilo/actions-poetry/compare/v2.3.0...v2.4.0 )
---
updated-dependencies:
- dependency-name: abatilo/actions-poetry
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
2024-01-08 07:23:14 -08:00
e0d0038039
Fix double counting in two sided bootstrap confidence intervals ( #1126 )
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* fixed double counting in bootstrap conf interval
Signed-off-by: Amit Sharma <amit_sharma@live.com>
* fixed double counting in bootstrap conf interval
Signed-off-by: Amit Sharma <amit_sharma@live.com>
* formatted correctly
Signed-off-by: Amit Sharma <amit_sharma@live.com>
---------
Signed-off-by: Amit Sharma <amit_sharma@live.com>
2023-12-22 08:16:00 -08:00
0c47c45eb3
Added documentation for creating causal model out of equations feature ( #1124 )
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* added documentation for creating causal model out of equations feature
Signed-off-by: priyadutt <bhattpriyadutt@gmail.com>
* Giving only positive values to the log function
Signed-off-by: priyadutt <bhattpriyadutt@gmail.com>
---------
Signed-off-by: priyadutt <bhattpriyadutt@gmail.com>
2023-12-21 21:57:48 -08:00
aa222575c1
Update some versions and poetry.lock
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Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2023-12-21 10:37:10 -07:00
63c66fe3a1
Fix bug with consistency of RegressionEstimator one-hot encoding ( #1112 )
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* Fix bug with consistency of RegressionEstimator one-hot encoding by switching from pandas get_dummies to sklearn OneHotEncoder.
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
* Add unit tests for one_hot_encode util function. Verify equivalence and consistency on new data.
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
---------
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
Co-authored-by: DAVID RAWLINSON <dave@causalwizard.app>
2023-12-21 21:11:14 +05:30
891105ac59
Add accessor and comments about CausalModel's CausalEstimator cache. ( #1113 )
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* Add an accessor and comments explaining the expected lifecycle and use of CausalEstimator objects stored in the CausalModel._estimator_cache dict. Accessor function gains test coverage and slightly simplifies logic via use in CausalModel.estimate_effect().
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
* Add unit test for CausalModel.get_estimator() and CausalEstimate.estimator, both CausalEstimator object references.
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
---------
Signed-off-by: DAVID RAWLINSON <dave@causalwizard.app>
Co-authored-by: DAVID RAWLINSON <dave@causalwizard.app>
2023-12-21 20:08:21 +05:30
36fd02c57a
Fix missing import for unit test
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Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2023-12-11 13:22:53 -08:00
72986a859d
Fix bug in networkx plot function with 0 error strenghts
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Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2023-12-11 10:56:00 -08:00
4f317345dc
Bump actions/setup-python from 4 to 5
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Bumps [actions/setup-python](https://github.com/actions/setup-python ) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases )
- [Commits](https://github.com/actions/setup-python/compare/v4...v5 )
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
2023-12-11 10:55:37 -08:00
1f9ee6be46
Rename classes in test folder
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The TestEstimator and TestRefuter were falsely interpreted as unit test classes due to their "Test" prefix.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2023-12-11 10:52:07 -08:00
711e6ba902
Fix issue with kernel_based independence tests with object types
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The KCI implementation does require the numpy type to be a numerical type explicitly. This commit converts the dtype to 'float' to ensure this.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2023-12-11 09:53:18 -08:00
20cfd23f4f
Potential fix for timeout errors in unit tests
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It seems there is a problem with one of the unit tests that explicitly rely on timeouts. Removing this test to avoid these issues in builds.
Signed-off-by: Patrick Bloebaum <bloebp@amazon.com>
2023-12-11 09:44:36 -08:00
Jon Cowie
Patrick Bloebaum
allcontributors[bot]
Rahul Shrestha
Patrick Blöbaum
Christoph
Víctor Quintas-Martínez
dependabot[bot]
Harsh Sinha
Lukas Heumos
Amit Sharma
yogabonito
drawlinson
Hongyu Lin
Jinyoung
Priyadutt