0f063916cc
QuakeSet dataset ( #1997 )
...
* add quakeset dataset
* add datamodule and tests
* update plot
* add plot title spacing
* fix tests
* fix tests finally
* fix mypy
* fix url
* fix mypy
* pin hf url to commit
* fix docs
* update dataset docs
* add missing h5py test
* fixes per suggestions
* updates per suggestions x3
* add setup method to define validation split
* undo split renaming
* update docstring
2024-04-19 22:27:43 +02:00
b71a948736
IntersectionDataset: ignore 0 area overlap ( #1985 )
...
* IntersectionDataset: ignore 0 area overlap
* Compute intersection a single time
2024-04-19 18:22:13 +02:00
04a85a593a
I/O Bench: add new dataset ( #1972 )
...
* I/O Bench: add new dataset
* Add tests
* IOBenchDataModule: add new data module
* Style fixes
* Style fixes
* RandomGeoSampler == RandomBatchGeoSampler when 1 scene
* IOBenchDataModule: add tests
* Add API docs
* Smaller class size
* Fix typo
* Add config file
* Add IOBenchTask
* Add tests
* pyupgrade
* Fix support for older PyTorch
* Add another config file
* Add usage documentation
2024-04-19 18:21:56 +02:00
8a0cc1ffc4
Bump ruff from 0.3.7 to 0.4.0 in /requirements ( #2011 )
2024-04-18 23:30:11 +02:00
1a2820e29a
Bump lightly from 1.5.2 to 1.5.3 in /requirements ( #2010 )
...
Bumps [lightly](https://github.com/lightly-ai/lightly ) from 1.5.2 to 1.5.3.
- [Release notes](https://github.com/lightly-ai/lightly/releases )
- [Commits](https://github.com/lightly-ai/lightly/compare/v1.5.2...v1.5.3 )
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2024-04-17 22:45:18 +02:00
041ad713ec
Bump shapely from 2.0.3 to 2.0.4 in /requirements ( #2009 )
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Bumps [shapely](https://github.com/shapely/shapely ) from 2.0.3 to 2.0.4.
- [Release notes](https://github.com/shapely/shapely/releases )
- [Changelog](https://github.com/shapely/shapely/blob/main/CHANGES.txt )
- [Commits](https://github.com/shapely/shapely/compare/2.0.3...2.0.4 )
---
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2024-04-17 22:44:57 +02:00
2f46c7321e
Fix plotting in datamodules when dataset is a Subset ( #2003 )
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* Fix plotting in datamodules when dataset is a Subset
* Guessing at how to fix isort
2024-04-17 11:21:05 +02:00
8b24ca189e
update fire risk url to hf ( #2000 )
2024-04-17 10:00:24 +02:00
925b93f3ec
RandomGeoSampler: improve performance ( #1968 )
2024-04-16 09:38:56 +02:00
ef0530b485
Bump setuptools from 69.2.0 to 69.5.1 in /requirements ( #1999 )
...
Bumps [setuptools](https://github.com/pypa/setuptools ) from 69.2.0 to 69.5.1.
- [Release notes](https://github.com/pypa/setuptools/releases )
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst )
- [Commits](https://github.com/pypa/setuptools/compare/v69.2.0...v69.5.1 )
---
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2024-04-15 23:46:27 +02:00
d9991ed154
Use ruff ( #1994 )
...
* Update config files
* Fix deviations
* Update requirements files
* Update CI
* Update devcontainer
* Update pre-commit
* Check Jupyter notebooks too
* Better safe than sorry
* Update docs
* Undo removal of mypy
* Test a bug
* Also format
* pre-commit: fix indentation
* Test a bug
* Fix the bug
* Run format too
* Fix typo
* mypy requires pytest
* Fix docs link
2024-04-15 23:46:00 +02:00
acad7d4760
Bump lightning[pytorch-extra] from 2.2.1 to 2.2.2 in /requirements ( #1993 )
...
Bumps [lightning[pytorch-extra]](https://github.com/Lightning-AI/lightning ) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/Lightning-AI/lightning/releases )
- [Commits](https://github.com/Lightning-AI/lightning/compare/2.2.1...2.2.2 )
---
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dependency-type: direct:production
update-type: version-update:semver-patch
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2024-04-13 21:48:36 +02:00
76a81228ca
Bump rasterio from 1.3.9 to 1.3.10 in /requirements ( #1992 )
...
Bumps [rasterio](https://github.com/rasterio/rasterio ) from 1.3.9 to 1.3.10.
- [Release notes](https://github.com/rasterio/rasterio/releases )
- [Changelog](https://github.com/rasterio/rasterio/blob/1.3.10/CHANGES.txt )
- [Commits](https://github.com/rasterio/rasterio/compare/1.3.9...1.3.10 )
---
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2024-04-13 21:48:12 +02:00
0f5eebd7d1
Bump h5py from 3.10.0 to 3.11.0 in /requirements ( #1990 )
...
Bumps [h5py](https://github.com/h5py/h5py ) from 3.10.0 to 3.11.0.
- [Release notes](https://github.com/h5py/h5py/releases )
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst )
- [Commits](https://github.com/h5py/h5py/compare/3.10.0...3.11.0 )
---
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2024-04-13 19:16:37 +02:00
2dfdc37429
Bump scikit-image from 0.22.0 to 0.23.1 in /requirements ( #1989 )
...
Bumps [scikit-image](https://github.com/scikit-image/scikit-image ) from 0.22.0 to 0.23.1.
- [Release notes](https://github.com/scikit-image/scikit-image/releases )
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt )
- [Commits](https://github.com/scikit-image/scikit-image/compare/v0.22.0...v0.23.1 )
---
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dependency-type: direct:production
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2024-04-13 19:16:10 +02:00
4f4709c3fb
Bump pandas from 2.2.1 to 2.2.2 in /requirements ( #1988 )
...
Bumps [pandas](https://github.com/pandas-dev/pandas ) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/pandas-dev/pandas/releases )
- [Commits](https://github.com/pandas-dev/pandas/compare/v2.2.1...v2.2.2 )
---
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2024-04-13 19:15:43 +02:00
4c22df7ea3
minor typo in custom_raster_dataset.ipynb ( #1987 )
2024-04-13 19:15:11 +02:00
83353b038f
Add eurocrops data module. ( #1869 )
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* Add eurocrops data module.
It is based on NAIPChesapeakeDataModule which splits bounding box of dataset
into 1/2 train, 1/4 val, and 1/4 test. This may not be the best way to train
an actual model.
* misc fixes
* various fixes per discussion
* update eurocrops test data
* fix
* fix version added placement
* fix failing test by forcing integrity test when checksum is requested
* Clarify SIZE setting in eurocrops test data
* fix currently remaining issues with eurocrops data module
* fix style
* more style fix
* Add documentation
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-04-12 15:16:31 +02:00
abceea09d0
models: Switch to kornia AugmentationSequential ( #1979 )
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* models: Switch to kornia AugmentationSequential
* Bump min version of kornia
* mypy-fix
* Remove kornia warnings from ignore list
* Wrap Lambda in ImageSequential
2024-04-05 16:07:02 +02:00
2425e29d38
Bump pyvista from 0.43.4 to 0.43.5 in /requirements ( #1983 )
2024-04-05 09:01:16 +02:00
a51a7203a4
Bump matplotlib from 3.8.3 to 3.8.4 in /requirements ( #1984 )
...
Bumps [matplotlib](https://github.com/matplotlib/matplotlib ) from 3.8.3 to 3.8.4.
- [Release notes](https://github.com/matplotlib/matplotlib/releases )
- [Commits](https://github.com/matplotlib/matplotlib/compare/v3.8.3...v3.8.4 )
---
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dependency-type: direct:production
update-type: version-update:semver-patch
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2024-04-04 20:29:46 +00:00
8d2e2b5e6f
Docs: allow horizontal scrolling of wide tables ( #1958 )
2024-04-04 09:16:27 +02:00
ea57469b0b
Drop Python 3.9 support ( #1966 )
2024-04-04 09:15:56 +02:00
26cab1060b
Bump rarfile from 4.1 to 4.2 in /requirements ( #1982 )
...
Bumps [rarfile](https://github.com/markokr/rarfile ) from 4.1 to 4.2.
- [Release notes](https://github.com/markokr/rarfile/releases )
- [Changelog](https://github.com/markokr/rarfile/blob/master/doc/news.rst )
- [Commits](https://github.com/markokr/rarfile/compare/v4.1...v4.2 )
---
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dependency-type: direct:production
update-type: version-update:semver-minor
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2024-04-03 21:16:45 +00:00
696c762f94
Bump scipy from 1.12.0 to 1.13.0 in /requirements ( #1981 )
...
Bumps [scipy](https://github.com/scipy/scipy ) from 1.12.0 to 1.13.0.
- [Release notes](https://github.com/scipy/scipy/releases )
- [Commits](https://github.com/scipy/scipy/compare/v1.12.0...v1.13.0 )
---
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dependency-type: direct:production
update-type: version-update:semver-minor
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2024-04-03 20:59:44 +00:00
de9509e7f3
Add pillow and update hooks ( #1977 )
2024-04-03 09:49:23 +02:00
f135e4573b
Bump pillow from 10.2.0 to 10.3.0 in /requirements ( #1974 )
...
* Bump pillow from 10.2.0 to 10.3.0 in /requirements
Bumps [pillow](https://github.com/python-pillow/Pillow ) from 10.2.0 to 10.3.0.
- [Release notes](https://github.com/python-pillow/Pillow/releases )
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst )
- [Commits](https://github.com/python-pillow/Pillow/compare/10.2.0...10.3.0 )
---
updated-dependencies:
- dependency-name: pillow
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Enum deprecation was reversed
* Ignore untyped call
---------
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-04-02 16:41:24 +00:00
07985aaeb1
Bump actions/setup-python from 5.0.0 to 5.1.0 ( #1973 )
2024-04-02 00:29:14 +02:00
3a8f974def
Bump torchvision from 0.17.1 to 0.17.2 in /requirements ( #1969 )
...
* Bump torchvision from 0.17.1 to 0.17.2 in /requirements
Bumps [torchvision](https://github.com/pytorch/vision ) from 0.17.1 to 0.17.2.
- [Release notes](https://github.com/pytorch/vision/releases )
- [Commits](https://github.com/pytorch/vision/compare/v0.17.1...v0.17.2 )
---
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- dependency-name: torchvision
dependency-type: direct:production
update-type: version-update:semver-patch
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* Bump torch too
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2024-03-28 21:51:01 +00:00
0171b1e390
RtD: use latest Ubuntu ( #1954 )
2024-03-27 12:43:38 +01:00
0e385dd800
README: add Hugging Face badge ( #1957 )
2024-03-27 08:47:36 +04:00
6ecbfae215
Bump lightly from 1.5.1 to 1.5.2 in /requirements ( #1964 )
...
Bumps [lightly](https://github.com/lightly-ai/lightly ) from 1.5.1 to 1.5.2.
- [Release notes](https://github.com/lightly-ai/lightly/releases )
- [Commits](https://github.com/lightly-ai/lightly/compare/v1.5.1...v1.5.2 )
---
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update-type: version-update:semver-patch
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2024-03-26 22:12:03 +01:00
4f3ab09941
Bump actions/cache from 4.0.1 to 4.0.2 ( #1960 )
2024-03-26 00:39:02 +01:00
4e4dabcee9
Bump pyupgrade from 3.15.1 to 3.15.2 in /requirements ( #1961 )
2024-03-26 00:38:44 +01:00
fabd96143f
Bump pytest-cov from 4.1.0 to 5.0.0 in /requirements ( #1962 )
2024-03-26 00:38:27 +01:00
5d253c55d8
Add South America Soybean DataModule ( #1959 )
...
* Add South America Soybean DataModule
* Add train_aug
* Regenerate data
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-03-25 17:34:13 +00:00
2849944a02
Add DOFA model ( #1903 )
...
* adding DOFA-Net model
* Convert git submodule to single file
* Get rid of __main__ code blocks
* Add WeightsEnum
* Add documentation
* Add CSV file
* Update link to transform implementation
* Add unit tests
* Test model forward function
* Complete test coverage
* Add type hints
* Solve most type issues
* Solve remaining type issues
* Undo sorting
* Simplifed docs
* Fix loading of real weights
* OFAViT -> DOFA
* Remove redundant helper function
* Add units for wavelengths
* wave_list -> wavelengths
* wvs -> wavelengths
* img_feat -> x
* Sorting
* inter_dim is not used
* Rename embedding layer
* Simpler name for position embedding
* wv_planes -> dynamic_embed_dim
* make weight init a hidden method
* Simpler model init
* Use permalink
* Document GEO-Bench performance
* Simpler test
* More columns
* Update correct column numbers
* Modified datasets
* Add large weights
* Update __all__
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-03-25 11:44:31 +00:00
d0300449c6
Add AgriFieldNet datamodule ( #1873 )
...
* add agrifieldnet datamodule
* fix codecov
* extra_args not needed
* Bigger default batch size
* Revert "extra_args not needed"
This reverts commit f690d8b1f8
2024-03-22 22:15:30 +00:00
bd48efe988
sentinel2nccm datamodule on new branch ( #1950 )
...
* sentinel2nccm datamodule
* Fixed style errors
* added 2019 to sentinel2, removed 2022 from nccm
* fixed error
* Use matching split size
---------
Co-authored-by: shreya28 <“shreya28@illinois.edu”>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-03-22 22:05:01 +00:00
5a7b9e58bc
Add Sentinel2_CDL Datamodule ( #1889 )
...
* cdlsentinel2
* update kwargs
* style
* arg type
* add cov
* kwargs
* update cdl data.py for intersection
* style
* create 2022 cdl for intersection
* test roi method
* style
* test_cdl year update
* intersection
* random_grid_cell_assignment
* add comments and line
* add description
* add doc
* Update SIZE variable in sentinel2/data.py and test stage in datamodules/cdlsentinel2.py
* merge val_aug and test_aug to aug
* rename cdlsentinel2 to sentinel2cdl
* fix isort
* No need to monkeypatch CDL
* Smaller backbone == faster tests
* Sort docs alphabetically
* Smaller Sentinel-2 test files
* Smaller CDL files, don't delete directory
* Sort imports alphabetically
* Fix doc names
* extra_args not needed
* center crop doesn't do anything
* blacken
* Revert "extra_args not needed"
This reverts commit 859f24ef15
2024-03-22 17:03:01 +01:00
fe9ee15469
Docs: fix link in Landsat weights table ( #1956 )
2024-03-20 19:41:44 +01:00
d82f421f99
LICENSE: Remove indentation ( #1955 )
2024-03-20 11:22:59 -07:00
642d2daf29
Resolve multiple SimCLR and MoCo lightly warnings ( #1931 )
...
* BaseTask: configure models before anything else
* Memory bank: specify feature dimension
* SimCLRTask: test one warning at a time
* blacken
* Supper older and newer lightly
2024-03-20 16:24:06 +01:00
5646d76bfb
Bump torchmetrics from 1.3.1 to 1.3.2 in /requirements ( #1953 )
2024-03-18 21:03:29 +00:00
050c0cf900
Bump actions/checkout from 4.1.1 to 4.1.2 ( #1952 )
2024-03-18 21:42:13 +01:00
b83cb50cb6
Bump black[jupyter] from 24.2.0 to 24.3.0 in /requirements ( #1951 )
...
Bumps [black[jupyter]](https://github.com/psf/black ) from 24.2.0 to 24.3.0.
- [Release notes](https://github.com/psf/black/releases )
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md )
- [Commits](https://github.com/psf/black/compare/24.2.0...24.3.0 )
---
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update-type: version-update:semver-minor
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2024-03-15 21:55:51 +01:00
1f6e974571
Add South Africa Crop Type Competition Dataset ( #1840 )
...
* initial commit
* add init description
* correct scanning of files in init
* added random data generation
* remove test directory
* Update metadata
* fix formatting
* add s1 data and update regex
* fix dataset and add tests
* formatting
* mypy
* add timeseries test and take images from july
* fix bug in merging files across dates
* mypy
* Bump lightly from 1.4.25 to 1.5.0 in /requirements (#1894 )
* Additional Satlas pretrained models (#1884 )
* Documentation, satellite-specific transform and weights for additional Satlas single-image rgb&multispectral Swin-v2 models. Tests pass.
* Address 3 of comments
* Address comments, fix readmydocs and isort, mypy still unhappy
* update
* Add bands to meta dicts
* Add comment about Satlas S2 RGB using TCI product
* linting
---------
Co-authored-by: Piper Wolters <piperw@allenai.org>
Co-authored-by: Piper Wolters <piperw@prior-cirrascale-79.reviz.ai2.in>
* Update tests/data/south_africa_crop_type/data.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update tests/data/south_africa_crop_type/data.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/south_africa_crop_type.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/south_africa_crop_type.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/south_africa_crop_type.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/south_africa_crop_type.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* refactor gettitem and bug fixes
* typo
* data.py style
* Update torchgeo/datasets/south_africa_crop_type.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/south_africa_crop_type.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* added comments for nonstandard functionality
* Update torchgeo/datasets/south_africa_crop_type.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* small change
* add verbose documentation
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Piper Wolters <46272042+piperwolters@users.noreply.github.com>
Co-authored-by: Piper Wolters <piperw@allenai.org>
Co-authored-by: Piper Wolters <piperw@prior-cirrascale-79.reviz.ai2.in>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-03-15 12:21:02 +01:00
f6cd092a4f
Bump kornia from 0.7.1 to 0.7.2 in /requirements ( #1948 )
...
Bumps [kornia](https://github.com/kornia/kornia ) from 0.7.1 to 0.7.2.
- [Release notes](https://github.com/kornia/kornia/releases )
- [Changelog](https://github.com/kornia/kornia/blob/main/CHANGELOG.md )
- [Commits](https://github.com/kornia/kornia/compare/v0.7.1...v0.7.2 )
---
updated-dependencies:
- dependency-name: kornia
dependency-type: direct:production
update-type: version-update:semver-patch
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2024-03-15 10:26:34 +01:00
23418ff2bf
Bump setuptools from 69.1.0 to 69.2.0 in /requirements ( #1947 )
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Bumps [setuptools](https://github.com/pypa/setuptools ) from 69.1.0 to 69.2.0.
- [Release notes](https://github.com/pypa/setuptools/releases )
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst )
- [Commits](https://github.com/pypa/setuptools/compare/v69.1.0...v69.2.0 )
---
updated-dependencies:
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dependency-type: direct:production
update-type: version-update:semver-minor
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2024-03-13 21:13:02 +00:00
f9a7d24007
Bump lightly from 1.5.0 to 1.5.1 in /requirements ( #1946 )
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Bumps [lightly](https://github.com/lightly-ai/lightly ) from 1.5.0 to 1.5.1.
- [Release notes](https://github.com/lightly-ai/lightly/releases )
- [Commits](https://github.com/lightly-ai/lightly/compare/v1.5.0...v1.5.1 )
---
updated-dependencies:
- dependency-name: lightly
dependency-type: direct:production
update-type: version-update:semver-patch
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2024-03-13 21:57:06 +01:00
Isaac Corley
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dependabot[bot]
Caleb Robinson
Burak
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Ashwin Nair
Jingtong
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Yi-Chia Chang
shreyakannan1205
George Huber