8af188c72e
Add AgriFieldNet India Challenge dataset ( #1459 )
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* add agrifieldnet dataset
* modified len check
* improve _download
* remove augmentation and wrong datamodule names
* update data.py and dataset
* update splits
* remove patch_size change
* fix style issues
* add yaml and modify/test for training
* fix data path and add trainer
* export prediction
* fix integrity check and len
* extract predction
* adding create submission file function
* adding create submission file function
* hyperparam tuning exp
* backup experiments
* remove redundant files
* reverse segmentation.py
* resolve minor issues
* modify yaml and add exp files
* update data.py
* remove outdated train.py
* update dataset, test, and new data
* fix style
* fix doc api
* remove datamodule
* fix geo_datasets.csv
* fix codecov
* fix read tif issue
* Update torchgeo/datasets/agrifieldnet.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fix init
* add ordinal_cmap to pred and remove comments
* remove suffix
* remove download entirely
* style
* Update agrifieldnet.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update agrifieldnet.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove url and if statement
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-12 12:41:51 -06:00
ff9555a37a
Bump ipywidgets from 8.1.1 to 8.1.2 in /requirements ( #1871 )
2024-02-09 00:56:13 +01:00
684c780d91
Bump lightning[pytorch-extra] from 2.1.4 to 2.2.0 in /requirements ( #1872 )
2024-02-09 00:55:47 +01:00
fa35b10e82
Debug coverage ( #1867 )
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* Debug coverage
* Don't use artifacts
2024-02-08 07:43:12 -06:00
67ef19e12b
Debug coverage ( #1866 )
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* Debug coverage
* Restore to MetRonnie's solution
2024-02-08 04:59:15 -06:00
ef31e932f1
Debug coverage ( #1865 )
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* Debug coverage
* Unzip files first
2024-02-07 13:25:35 -06:00
cf6a459cce
Debug coverage ( #1864 )
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* Debug coverage
* Extract all artifacts
2024-02-07 12:56:20 -06:00
78c97f97ad
Debug coverage ( #1863 )
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* Debug coverage
* Manually store PR information
* Remove empty line
2024-02-07 11:50:59 -06:00
216773a72c
Debug coverage ( #1862 )
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* Debug coverage
* Checkout PR commit
2024-02-07 07:58:33 -06:00
b6cbb17f0d
Debug coverage ( #1858 )
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* Debug coverage
* Add necessary info
2024-02-07 03:50:35 -06:00
f0885eeb08
Bump pyvista from 0.43.2 to 0.43.3 in /requirements ( #1860 )
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Bumps [pyvista](https://github.com/pyvista/pyvista ) from 0.43.2 to 0.43.3.
- [Release notes](https://github.com/pyvista/pyvista/releases )
- [Commits](https://github.com/pyvista/pyvista/compare/v0.43.2...v0.43.3 )
---
updated-dependencies:
- dependency-name: pyvista
dependency-type: direct:production
update-type: version-update:semver-patch
...
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2024-02-07 03:39:02 -06:00
9515d87f6c
Bump numpy from 1.26.3 to 1.26.4 in /requirements ( #1859 )
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Bumps [numpy](https://github.com/numpy/numpy ) from 1.26.3 to 1.26.4.
- [Release notes](https://github.com/numpy/numpy/releases )
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst )
- [Commits](https://github.com/numpy/numpy/compare/v1.26.3...v1.26.4 )
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
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2024-02-07 03:38:49 -06:00
1cf8601071
Debug coverage ( #1857 )
2024-02-06 10:34:34 -06:00
82e2559a1f
Test Python 3.12 ( #1837 )
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* Test Python 3.12
* Flake8 fix
* Caching bug
2024-02-06 09:04:40 -06:00
78d1854b73
Revert mypy changes ( #1836 )
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* Revert mypy changes
* Remove unused import
2024-02-06 09:04:22 -06:00
f5624ac2cc
Adding South America Soybean Dataset ( #1668 )
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* Created file for South America Soybean dataset and added it to __init__.py
* Updated south_america_soybean.py
* Added tests
* Updated data.py
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update tests/datasets/test_south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update tests/datasets/test_south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update tests/datasets/test_south_america_soybean.py
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* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update tests/datasets/test_south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update tests/datasets/test_south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Update tests/datasets/test_south_america_soybean.py
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Updated tests
* fixed an error in init
* fixed some path inconsistencies
* fixed all errors
* Fix comments
* added dataset to datasets.rst
* edit datasets.rst
* pushed again
* Delete tests/data/south_america_soybean/.DS_Store
* Update docs/api/datasets.rst
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
* Edited datasets.rst
* Edited datasets.rst
* Fixed styling
* Fix docstring formatting
* Fix whitespace
* Add blank line
* Fixed download urls
* Update geo_datasets.csv
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/south_america_soybean.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Updated geo_datasets.csv and added years parameter to class
* Delete tests/data/.DS_Store
* Delete tests/.DS_Store
* Update south_america_soybean.py
* Fix docstring formatting
---------
Co-authored-by: Yi-Chia Chang <61452667+yichiac@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-06 06:11:17 -06:00
55b3c50891
load_state_dict does not return the model ( #1503 )
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* Update pretrained_weights.ipynb
Fixed an error in the state dict loading of the turorial and added a comment on the num_classes parameter when creating timm models.
* Update docs/tutorials/pretrained_weights.ipynb
* Update utils.py
* Import Tuple from typing
* Change return of `load_state_dict` from `model` to `Tuple[List[str], List[str]]`, matching the return of the standard PyTorch builtin function.
* Update pretrained_weights.ipynb
Remove example of loading pretrained model without prediction head (`num_classes=0`).
* Update README.md
Adapt new `load_state_dict` function.
* Mimic return type of builtin load_state_dict
* Modern type hints
* Blacken
* Try being explicit
---------
Co-authored-by: Caleb Robinson <calebrob6@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-06 03:55:15 -06:00
91b5e01ef8
CI: stable notebook dependency versions ( #1838 )
2024-02-06 03:54:23 -06:00
a52f88f614
Debug coverage ( #1853 )
2024-02-05 07:44:13 -06:00
d4e68d5710
Debug coverage ( #1852 )
2024-02-05 06:41:07 -06:00
ef10eb14b6
Debug coverage ( #1851 )
2024-02-05 05:05:17 -06:00
9efd519ee4
Debug coverage ( #1850 )
2024-02-05 04:46:26 -06:00
7dd0d65dfd
Debug coverage ( #1849 )
...
* Debug coverage
* Specify workflow to download artifacts from
2024-02-05 04:07:30 -06:00
ab7aef1901
Debug coverage ( #1848 )
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* Debug coverage
* Still dependent on non-existing job
2024-02-04 15:36:40 -06:00
d9895688cf
Debug coverage ( #1847 )
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* Debug coverage
* Minimum is not a workflow name
2024-02-04 11:56:27 -06:00
8d60e857d2
Solution for codecov rate limits ( #1846 )
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* Solution for codecov rate limits
* Add upload workflow
2024-02-04 10:48:51 -06:00
e119b37949
add 2023 md5 ( #1844 )
2024-02-04 05:13:36 -06:00
80f27bd024
Bump lightning[pytorch-extra] from 2.1.3 to 2.1.4 in /requirements ( #1843 )
2024-02-02 21:40:44 +01:00
4a85c85246
lightly v1.4.26 is incompatible with smp ( #1825 )
2024-02-01 08:57:50 -06:00
f12f6255ed
Bump torchvision from 0.16.2 to 0.17.0 in /requirements ( #1835 )
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* Bump torchvision from 0.16.2 to 0.17.0 in /requirements
Bumps [torchvision](https://github.com/pytorch/vision ) from 0.16.2 to 0.17.0.
- [Release notes](https://github.com/pytorch/vision/releases )
- [Commits](https://github.com/pytorch/vision/compare/v0.16.2...v0.17.0 )
---
updated-dependencies:
- dependency-name: torchvision
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Bump torch too
* Remove unneeded type ignores
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-30 21:07:36 +00:00
542f2c794f
Bump pytest from 7.4.4 to 8.0.0 in /requirements ( #1833 )
2024-01-30 14:18:28 -06:00
2571e13552
Bump nbmake from 1.4.6 to 1.5.0 in /requirements ( #1832 )
2024-01-29 23:38:46 +00:00
96f1be6a74
Bump black[jupyter] from 24.1.0 to 24.1.1 in /requirements ( #1834 )
2024-01-29 23:36:54 +00:00
d3276473e3
Bump codecov/codecov-action from 3.1.4 to 3.1.5 ( #1831 )
2024-01-30 00:32:28 +01:00
643bc7a457
README: add color lexing to bibtex ( #1820 )
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* README: add color lexing to bibtex
* Try again
* Try bibtex
2024-01-29 13:29:20 +00:00
7b8692b3f4
Bump black[jupyter] from 23.12.1 to 24.1.0 in /requirements ( #1829 )
...
* Bump black[jupyter] from 23.12.1 to 24.1.0 in /requirements
Bumps [black[jupyter]](https://github.com/psf/black ) from 23.12.1 to 24.1.0.
- [Release notes](https://github.com/psf/black/releases )
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md )
- [Commits](https://github.com/psf/black/compare/23.12.1...24.1.0 )
---
updated-dependencies:
- dependency-name: black[jupyter]
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update TorchGeo
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-27 11:12:00 +00:00
a3f3e40541
Add EuroCrops dataset ( #1813 )
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* Add EuroCrops vector dataset.
* Fix flake8 errors.
* apply black check reformatting
* flake8/black checks
* more test fixes
* more test fixes
* remove itertools product import
* isort test
* Cast integer indexes to long to work with old pytorch version.
* Add EuroCrops to files in docs/api/
* Update resolution to correspond to 10 m/pixel in WGS-84.
But EuroCrops shapefiles are in many different CRS depending on the country,
some WGS-84 others EPSG:31287, EPSG:5514, etc.
* Add int_array_to_tensor function to convert numpy uint16/32 arrays to
pytorch int32/64 tensors.
* add number of polygons to eurocrops dataset description
* Updates per PR discussion
* Add filename_glob and implement filename_regex to work with automatic date extraction.
* Update torchgeo/datasets/eurocrops.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Fix int_array_to_tensor for non-int inputs.
* type annotation fix
* type annotation fix x2
* Add additional classes parameters to test to improve coverage of eurocrops dataset
* Update label_fn change to overloadable VectorDataset._get_label function.
* Use color gradient for visualizing EuroCrops masks
* Fix apply_cmap bugs.
* Fix get_cmap call for old matplotlib version
* public get_label and eurocrops regex update
* Match two-letter country code only
* versionadded notes and fiona.Feature type/doc fix
* test dataset integrity failure
* Use fiona.model.Feature consistently.
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-26 11:04:22 -06:00
d998cb7459
Airphen: add new dataset ( #1803 )
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* Airphen: add new dataset
* Add paper to cite
* Make it sound less like marketing material
2024-01-26 09:32:08 -06:00
0f8b0ac3ea
Add VHR10 datamodule ( #1082 )
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* Add VHR10 datamodule
* Add newline
* patch_size accepts int and tuple of ints
* Update conf
* VHR10 Datamodule v2
* Remove auto_lr_find
* Remove preprocess
* Update config
* Remove setting of matplotlib backend
* Remove import
* Typing update
* Key fix
* Coverage fix
* Update conf
* Update conf
* Dowload=True
* Use weights
* Empty commit
* Switch to ndim
* Remove conf, tight_layout and spacing
* Set constrained layout via rcParams
* Revert and bump min matplotlib version
* Switch back to dataset_split
* Separate out AugPipe
* Increase figsize & revert matplotlib
* Common collate_fn
* Class var std
* Undo std change in BaseDataModule
* Undo req changes
* Remove unused line
* Add version strings
* mypy fix
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-25 18:06:11 +00:00
b0f5184bf5
RtD: use stable dependency versions ( #1827 )
2024-01-25 21:38:38 +04:00
544590e724
Bump actions/cache from 3.3.3 to 4.0.0 ( #1819 )
...
Bumps [actions/cache](https://github.com/actions/cache ) from 3.3.3 to 4.0.0.
- [Release notes](https://github.com/actions/cache/releases )
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md )
- [Commits](https://github.com/actions/cache/compare/v3.3.3...v4.0.0 )
---
updated-dependencies:
- dependency-name: actions/cache
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
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2024-01-23 10:43:47 +00:00
77e7e7f42a
Bump pandas from 2.1.4 to 2.2.0 in /requirements ( #1817 )
...
Bumps [pandas](https://github.com/pandas-dev/pandas ) from 2.1.4 to 2.2.0.
- [Release notes](https://github.com/pandas-dev/pandas/releases )
- [Commits](https://github.com/pandas-dev/pandas/compare/v2.1.4...v2.2.0 )
---
updated-dependencies:
- dependency-name: pandas
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-23 04:25:26 -06:00
f678f49688
Bump scipy from 1.11.4 to 1.12.0 in /requirements ( #1818 )
2024-01-22 22:17:29 +01:00
0643b7de0d
Labeler: additional doc locations ( #1807 )
2024-01-21 11:22:16 -06:00
b20ee4f269
Updated ChesapeakeCVPR to use NLCD colormap ( #1690 )
...
* Updated ChesapeakeCVPR to use NLCD colormap
* Reused NLCD colormap in ChesapeakeCVPR dataset
* Updated ChesapeakeCVPR to use NLCD colormap
* Update chesapeake.py
* updated as suggested
* Fixed NLCD colors
* Updated as suggested
* removed nlcd_cmap attribute from ChesapeakeCVPR class
2024-01-20 05:53:33 -06:00
fb990ecb00
Bump rtree from 1.1.0 to 1.2.0 in /requirements ( #1815 )
2024-01-19 23:16:56 +01:00
79cba043da
VectorDataset: extract mint/maxt from filename ( #1814 )
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* filter by date
* added date format docstring
* added test
* moving match
* simpler date
* changed the name in data
* mypy
2024-01-19 13:21:46 -06:00
43d7133614
Add CropHarvest Dataset ( #1677 )
...
* initial commit
* Added functionality to cropharvest dataset
* Added test coverage
* test fixes
* mdpy typing
* flake8 revision
* added docs
* fixed h5py import
* fix .rst underline
* updated tests to mock h5py module
* fixed documentation
* fixed black formating
* turn labels to tensors
* fix data generationa and mdpy for tensor encoding
* update verify model
* doc style
* test coverage
* fix test coverage leaks
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* update test data path and monkeypatch
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove hard coded classes
* fixed plot and label one hot encoding
* refactor datasetnotfounderror
* resolve conflict with main
* refactored importerror
* mdpy
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update torchgeo/datasets/cropharvest.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Remove empty class and correct csv
* Update cropharvest.py
* formatting changes
---------
Co-authored-by: georgehuber <“georgehuber8@gmail.com”>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Caleb Robinson <calebrob6@gmail.com>
2024-01-19 06:39:24 -06:00
1c20678a10
Bump torchmetrics from 1.3.0 to 1.3.0.post0 in /requirements ( #1812 )
2024-01-17 20:50:16 +00:00
436baa9773
Fix the default folds and assertion for checking valid folds in PASTIS ( #1810 )
...
* Fix the default folds and assertion for checking valid folds in PASTIS
* Maybe fix PASTIS tests
* Update data
2024-01-16 06:26:12 -06:00
Yi-Chia Chang
dependabot[bot]
Adam J. Stewart
Jingtong
Konstantin Klemmer
Favyen Bastani
Ashwin Nair
Al-Ekram Elahee Hridoy
Odd Eirik Igland
George Huber
Caleb Robinson